Anisotropic Small Amplitude Peptide Plane Dynamics in Proteins from Residual Dipolar Couplings

Journal of the American Chemical Society

Volumn 126, Issue 15, 2004, Pages 4907-4920

  Bernadó, Pau ^a   Blackledge, Martin ^a  

^a INSTITUT DE BIOLOGIE STRUCTURALE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

DATA REDUCTION; MAGNETIC ANISOTROPY; MATHEMATICAL MODELS; NUCLEAR MAGNETIC RESONANCE; PARAMETER ESTIMATION; PROTEINS; ROBUSTNESS (CONTROL SYSTEMS); TENSORS;

GAUSSIAN AXIAL FLUCTUATION (GAF); RESIDUAL DIPOLAR COUPLINGS (RDC); SMALL AMPLITUDE ANISOTROPIC PEPTIDE PLANE MOTIONS;

POLYPEPTIDES;

LYSOZYME;

ACCURACY; ANISOTROPY; ARTICLE; CALCULATION; CONFORMATION; CRYSTAL; MOLECULAR DYNAMICS; MOLECULAR MODEL; NUCLEAR MAGNETIC RESONANCE; PARAMETER; PROTEIN STRUCTURE; STATISTICAL SIGNIFICANCE; X RAY DIFFRACTION;

ANISOTROPY; COMPUTER SIMULATION; MODELS, CHEMICAL; MONTE CARLO METHOD; MURAMIDASE; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; OXIDOREDUCTASES; OXIDOREDUCTASES ACTING ON SULFUR GROUP DONORS; PROTEIN CONFORMATION; PROTEINS; SULFITE REDUCTASE (NADPH); TETRAHYDROFOLATE DEHYDROGENASE; UBIQUITIN;

EID: 1842862935     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja036977w     Document Type: Article

References (54)

1. Tjandra, N.; Bax, A. Science 1997, 278, 1111-1114.
2. Tolman, J. R.; Flanagan, J. M.; Kennedy, M. A.; Prestegard, J. H. Proc. Natl. Acad. Sci. 1995, 92, 9279-9283.
3. Prestegard, J. H.; Al-Hashimi, H. M.; Tolman, J. R. Q. Rev. Biophys. 2000, 33, 371-424.
4. Bax, A.; Kontaxis, G.; Tjandra, N. Methods Enzymol. 2001, 339, 127-174.
5. de Alba, E.; Tjandra, N. Prog. Nucl. Magn. Reson. Spectrosc. 2002, 40, 175-197.
6. Tolman, J. R. Curr. Opin. Struct. Biol. 2001, 11, 532-539.
7. Tolman, J. R.; Flanagan, J. M.; Kennedy, M. A.; Prestegard, J. H. Nat. Struct. Biol. 1997, 4, 292-297.
8. Bax, A.; Tjandra, N. Nat. Struct. Biol. 1997, 4, 254-256.
9. Fischer, M. W. F.; Losonczi, J. A.; Weaver, J. L.; Prestegard, J. H. Biochemistry 1999, 38, 9013-9022.
10. Tian, F. F.; Al-Hashimi, H. M.; Craighead, J. L.; Prestegard, J. H. J. Am. Chem. Soc. 2001, 123, 485-492.
11. Tolman, J. R.; Al-Hashimi, H. M.; Kay L. E.; Prestegard, J. H. J. Am. Chem. Soc. 2001, 123, 1416-1424.
12. Lipari, G.; Szabo, A. J. Am. Chem. Soc. 1982, 104, 4546-4559.
13. Lipari, G.; Szabo, A. J. Am. Chem. Soc. 1982, 104, 4559-4570.
14. Meiler, J.; Prompers, J. J.; Peti, W.; Griesinger, C.; Brüschweiler, R. J. Am. Chem. Soc. 2001, 123, 6098-6107.
15. Peti, W.; Meiler, J.; Brüschweiler, R.; Griesinger, C. J. Am. Chem. Soc. 2002, 124, 5822-5833.
16. Tolman, J. R. J. Am. Chem. Soc. 2002, 124, 12020-12030.
17. Briggman, K. B.; Tolman, J. R. J. Am. Chem. Soc. 2003, 125, 10164-10165.
18. Ulmer, T. S.; Ramirez, B. E.; Delaglio, F.; Bax, A. J. Am. Chem. Soc. 2003, 125, 9179-9191.
19. Bremi, T.; Brüschweiler, R. J. Am. Chem. Soc. 1997, 119, 6672-6673.
20. Lienin, S. F.; Bremi, T.; Brutscher, B.; Brüschweiler, R.; Ernst, R. R. J. Am. Chem. Soc. 1998, 120, 9870-9879.
21. Brüschweiler, R.; Wright, P. E. J. Am. Chem. Soc. 1994, 116, 8426-8427.
22. Fischer, M. W. F.; Zeng, L.; Pang, Y.; Hu, W.; Majumdar, A.; Zuiderweg, E. R. P. J. Am. Chem. Soc. 1997, 119, 12629-12642.
23. Pang, Y.; Zuiderweg, E. R. P. J. Am. Chem. Soc. 2000, 122, 4841-4842.
24. Champier, L.; Sibille, N.; Bersch, B.; Brutscher, B.; Blackledge, M.; Covès, J. Biochemistry 2002, 41, 3770-3780.
25. Tete-Favier, F.; Cobessi, D.; Boschi-Muller, S.; Azza, S.; Branlant, G.; Aubry, A. Structure 2000, 8, 1167-1178.
26. Hansen, M.; Mueller, L.; Pardi, A. Nat. Struct. Biol. 1998, 5, 1065-1071.
27. Béraud, S.; Bersch, B.; Brutscher, B.; Gans, P.; Barras, F.; Blackledge, M. J. Am. Chem. Soc. 2002, 124, 13709-13715.
28. Ottiger, M.; Bax, A. J. Am. Chem. Soc. 1998, 120, 12334-12341.
29. Cornilescu, G.; Marquardt, J. L.; Ottiger, M.; Bax, A. J. Am. Chem. Soc. 1998, 120, 6836-6837.
30. Hus, J.-C.; Peti, W.; Griesinger, C.; Brüschweiler, R. J. Am. Chem. Soc. 2003, 125, 5596-5597.
31. Polshakov, V. I.; Smirnov, E. G.; Birdsall, B.; Kelly, G.; Feeney, J. J. Biomol. NMR 2002, 24, 67-70.
32. Ruckert, M.; Otting, G. J. Am. Chem. Soc. 2000, 122, 7793-7794.
33. Schwalbe, H.; Grimshaw, S. B.; Spencer, A.; Buck, M.; Boyd, J.; Dobson, C. M.; Redfield, C.; Smith, L. J. Protein Sci. 2001, 10, 677-688.
34. Ramirez, B. A.; Bax, A. J. Am. Chem. Soc. 1998, 120, 9106-9107.
35. Vijay-Kumar, S.; Bugg, C. E.; Cook, W. J. J. Mol. Biol. 1987, 194, 531-544.
36. Derrick, J. P.; Wigley, D. B. J. Mol. Biol. 1994, 243, 906-918.
37. Bolin, J. T.; Filman, D. J.; Matthews, D. A.; Hamlin, R. C.; Kraut, J. J. Biol. Chem. 1982, 257, 13650-13652.
38. Walsh, M. A.; Schneider, T. R.; Sieker, L. C.; Dauter, Z.; Lamzin, V. S. ; Wilson, K. S. Acta Crystallogr. D. 1998, 54, 522-546.
39. Steinrauf, M. A. Acta Crystallogr. D. 1998, 54, 767-780.
40. Vaney, M. C.; Maignan, S.; Riès-Kautt, M.; Ducruix, A. Acta Crystallogr. D: Biol. Crystallogr. 1996, 52, 505-517.
41. Vaney, M. C.; Broutin, I.; Retailleau, P.; Douangamath, A.; Lafont, S.; Hamiaux, C.; Prange, T.; Ducruix, A.; Riès-Kautt, M. Acta Crystallogr. D 2001, 57, 929-940.
42. Artymiuk, P. J.; Blake, C. C. F.; Rice, D. W.; Wilson, K. W. Acta Crystallogr. B 1982, 38, 778-788.
43. Bon, C.; Lehmann, M. S.; Wilkinson, C. Acta Crystallogr. D 1999, 55, 978-987.
44. Kurinov, I. V.; Harrison, R. W. Acta Crystallogr. D 1995, 51, 98-110.
45. Sundaralingam, M.; Rao, S. RCSB Protein Data Bank, Deposition Date July 1995.
46. Biswal, B. K.; Sukumar, N.; Vijayan, M. Acta Crystallogr. D: Biot. Crystallogr. 2000, 56, 1110-1119.
47. Diamond, R. J. Mol. Biol. 1974, 82, 371-392.
48. Sukumar, N.; Biswal, B. K.; Vijayan, M.: Acta Crystallogr. D: Biol. Crystallogr. 1999, 55, 934-937.
49. Bradbrook, S.; Deacon, A.; Habash, J.; Helliwell, J. R.; Helliwell, M.; Nieh, Y. P.; Snell, E. H.; Trapani, G.; Thompson, A. W.; Campbell, J. W.; Allinson, N. M.; Moon, K.; Ursby, T.; Wulff, M. Proc. SPIE-Int. Soc. Opt. Eng. 1995, 2521, 160.
50. Dosset, P.; Hus, J.-C.; Marion, D.; Blackledge, M. J. Biomol. NMR 2001, 20, 223-231.
51. Zweckstetter, M.; Bax, A. J. Biomol. NMR 2002, 23, 127-137.
52. Case, D. J. Biomol. NMR. 1999, 15, 95-102.
53. Kvick, A.; Al-Karaghonli, A. R.; Koetzle, T. F. Acta Crystallogr. 1977, B33, 3796-3802.
54. Gallagher, T.; Alexander, P.; Bryan, P.; Gilliland, G. L. Biochemistry 1994, 33 4721.