-
1
-
-
0035838382
-
Current topics in RNA-protein recognition: Control of specificity and biological function through induced fit and conformational capture
-
N. Leulliot, G. Varani, Current topics in RNA-protein recognition: control of specificity and biological function through induced fit and conformational capture, Biochemistry 40(2001), 7947-7956.
-
(2001)
Biochemistry
, vol.40
, pp. 7947-7956
-
-
Leulliot, N.1
Varani, G.2
-
2
-
-
0033784534
-
Induced-fit in RNA-protein recognition
-
J. R. Williamson, Induced-fit in RNA-protein recognition, Nature Struct. Biol. 7(2000), 834-837.
-
(2000)
Nature Struct. Biol.
, vol.7
, pp. 834-837
-
-
Williamson, J.R.1
-
3
-
-
0028010888
-
HhaI methyltransferase flips its target base out of the DNA helix
-
S. Klimasauskas, S. Kumar, R. J. Roberts, X. Cheng, HhaI methyltransferase flips its target base out of the DNA helix, Cell 76(1994), 357-369.
-
(1994)
Cell
, vol.76
, pp. 357-369
-
-
Klimasauskas, S.1
Kumar, S.2
Roberts, R.J.3
Cheng, X.4
-
4
-
-
24744434584
-
Dynamics-based amplification of RNA function and its characterization by using NMR spectroscopy
-
H. M. Al-Hashimi, Dynamics-Based Amplification of RNA Function and Its Characterization by Using NMR Spectroscopy, ChemBioChem 6(2005), 1506-1519.
-
(2005)
ChemBioChem
, vol.6
, pp. 1506-1519
-
-
Al-Hashimi, H.M.1
-
5
-
-
34547726270
-
NMR studies of dynamics in RNA and DNA by 13C relaxation
-
Z. Shajani, G. Varani, NMR Studies of Dynamics in RNA and DNA by 13C Relaxation, Biopolymers 86(2007), 348-359.
-
(2007)
Biopolymers
, vol.86
, pp. 348-359
-
-
Shajani, Z.1
Varani, G.2
-
6
-
-
41449114103
-
Solid-state deuterium NMR studies reveal micros-ns motions in the HIV-1 transactivation response RNA recognition site
-
G. L. Olsen, D. C. Echodu, Z. Shajani, M. FJ. Bardaro, G Varani, G. P. Drobny, Solid-state deuterium NMR studies reveal micros-ns motions in the HIV-1 transactivation response RNA recognition site, J. Am. Chem. Soc. 10(2008), 2896-2897.
-
(2008)
J. Am. Chem. Soc.
, vol.10
, pp. 2896-2897
-
-
Olsen, G.L.1
Echodu, D.C.2
Shajani, Z.3
Bardaro, M.F.J.4
Varani, G.5
Drobny, G.P.6
-
7
-
-
0000096326
-
Solid-state NMR studies of DNA structure and dynamics
-
T. M. Alam, G. P. Drobny, Solid-state NMR studies of DNA structure and dynamics, Chem. Rev. 91(1991), 1545-1590.
-
(1991)
Chem. Rev.
, vol.91
, pp. 1545-1590
-
-
Alam, T.M.1
Drobny, G.P.2
-
8
-
-
74849109067
-
Intermediate rate atomic trajectories of RNA by solid-state NMR spectroscopy
-
G. L. Olsen, M. F. Bardaro, D. C. Echodu, G. P. Drobny, G Varani, Intermediate Rate Atomic Trajectories of RNA by Solid-State NMR Spectroscopy, J. Am. Chem. Soc. 132(2009), 303-308.
-
(2009)
J. Am. Chem. Soc.
, vol.132
, pp. 303-308
-
-
Olsen, G.L.1
Bardaro, M.F.2
Echodu, D.C.3
Drobny, G.P.4
Varani, G.5
-
9
-
-
69249231036
-
Hydration dependent dynamics in RNA
-
G. L. Olsen, M. F. Bardaro, D. C. Echodu, G. P. Drobny, G Varani, Hydration dependent dynamics in RNA, J. Biomol. NMR 45(2009), 133-142.
-
(2009)
J. Biomol. NMR
, vol.45
, pp. 133-142
-
-
Olsen, G.L.1
Bardaro, M.F.2
Echodu, D.C.3
Drobny, G.P.4
Varani, G.5
-
10
-
-
56349171411
-
Furanose dynamics in the HhaI methyltransferase target DNA studied by solution and solid-state NMR relaxation
-
D. Echodu, G Goobes, Z. Shajani, K. Pederson, G Meints, G Varani, G Drobny, Furanose Dynamics in the HhaI Methyltransferase Target DNA Studied by Solution and Solid-State NMR Relaxation, J. Phys. Chem. B 112(2008), 13934-13944.
-
(2008)
J. Phys. Chem. B
, vol.112
, pp. 13934-13944
-
-
Echodu, D.1
Goobes, G.2
Shajani, Z.3
Pederson, K.4
Meints, G.5
Varani, G.6
Drobny, G.7
-
11
-
-
63249089973
-
How binding of small molecule and peptide ligands to HIV-1 TAR alters the RNA motional landscape
-
M. F. Bardaro, Jr, Z. Shajani, K. Patora-Komisarska, J. A. Robinson, G Varani, How binding of small molecule and peptide ligands to HIV-1 TAR alters the RNA motional landscape, Nucl. Acids. Res. 37(2009), 1529-1540.
-
(2009)
Nucl. Acids. Res.
, vol.37
, pp. 1529-1540
-
-
Bardaro Jr., M.F.1
Shajani, Z.2
Patora-Komisarska, K.3
Robinson, J.A.4
Varani, G.5
-
12
-
-
37549002149
-
Dynamics of large elongated RNA by NMR carbon relaxation
-
A. L. Hansen, H. M. Al-Hashimi, Dynamics of Large Elongated RNA by NMR Carbon Relaxation, J Am Chem Soc 129(2007), 16072-16082.
-
(2007)
J Am Chem Soc
, vol.129
, pp. 16072-16082
-
-
Hansen, A.L.1
Al-Hashimi, H.M.2
-
13
-
-
0036293438
-
Base flexibility in HIV-2 TAR RNA mapped by solution 15N, 13C NMR relaxation
-
K. T. Dayie, A. S. Brodsky, J. R. Williamson, Base Flexibility in HIV-2 TAR RNA Mapped by Solution 15N, 13C NMR Relaxation, J. Mol. Biol. 317(2002), 263-278.
-
(2002)
J. Mol. Biol.
, vol.317
, pp. 263-278
-
-
Dayie, K.T.1
Brodsky, A.S.2
Williamson, J.R.3
-
14
-
-
34249078827
-
Binding of U1A protein changes RNA dynamics as observed by 13C NMR relaxation studies
-
Z. Shajani, G Varani, Binding of U1A Protein Changes RNA Dynamics As Observed by 13C NMR Relaxation Studies., Biochemistry 46(2007), 5875-5883.
-
(2007)
Biochemistry
, vol.46
, pp. 5875-5883
-
-
Shajani, Z.1
Varani, G.2
-
15
-
-
0032580790
-
13C relaxation and dynamics of the purine bases in the iron responsive element RNA hairpin
-
K. B. Hall, C. Tang, 13C Relaxation and Dynamics of the Purine Bases in the Iron Responsive Element RNA Hairpin, Biochemistry 37(1998), 9323-9332.
-
(1998)
Biochemistry
, vol.37
, pp. 9323-9332
-
-
Hall, K.B.1
Tang, C.2
-
16
-
-
0042888606
-
Rotational diffusion tensor of nucleic acids from C-13 NMR relaxation
-
J. Boisbouvier, Z. Wu, A. Ono, M. Kainosho, A. Bax, Rotational diffusion tensor of nucleic acids from C-13 NMR relaxation, J. Biomol. NMR 27(2003), 133-142.
-
(2003)
J. Biomol. NMR
, vol.27
, pp. 133-142
-
-
Boisbouvier, J.1
Wu, Z.2
Ono, A.3
Kainosho, M.4
Bax, A.5
-
17
-
-
47649130629
-
13C relaxation studies of the DNA target sequence for HhaI methyltransferaase reveal unique motional properties
-
Z. Shajani, G Varani, 13C Relaxation Studies of the DNA Target Sequence for HhaI Methyltransferaase Reveal Unique Motional Properties, Biochemistry 47(2008), 7617-7625.
-
(2008)
Biochemistry
, vol.47
, pp. 7617-7625
-
-
Shajani, Z.1
Varani, G.2
-
18
-
-
0010042341
-
-
John Wiley and Sons; West Sussex, England
-
M. H. Levitt, Spin Dynamics, John Wiley and Sons; West Sussex, England, (2001).
-
(2001)
Spin Dynamics
-
-
Levitt, M.H.1
-
19
-
-
19444373245
-
13C NMR relaxation studies of RNA base and ribose nuclei reveal a complex pattern of motions in the RNA binding site for human U1A protein
-
Z. Shajani, G Varani, 13C NMR relaxation studies of RNA base and ribose nuclei reveal a complex pattern of motions in the RNA binding site for human U1A protein, J. Mol. Biol. 349(2005), 699-715.
-
(2005)
J. Mol. Biol.
, vol.349
, pp. 699-715
-
-
Shajani, Z.1
Varani, G.2
-
20
-
-
0000733545
-
NMR experiments for the measurement of carbon relaxation properties in highly enriched, uniformly 13C, 15N-labeled proteins: Applications to 13C carbons
-
T. Yamazaki, R. Muhandiram, L. Kay, E., NMR Experiments for the Measurement of Carbon Relaxation Properties in Highly Enriched, Uniformly 13C, 15N-Labeled Proteins: Applications to 13C Carbons, J. Am. Chem. Soc. 116(1994), 8266-8267.
-
(1994)
J. Am. Chem. Soc.
, vol.116
, pp. 8266-8267
-
-
Yamazaki, T.1
Muhandiram, R.2
Kay, L.E.3
-
21
-
-
0024449503
-
Backbone dynamics of proteins as studied by 15N inverse detected heteronuclear NMR spectroscopy: Application to staphylococcal nuclease
-
L. Kay, E., D. Torchia, A., A. Bax, Backbone Dynamics of Proteins As Studied by 15N Inverse Detected Heteronuclear NMR Spectroscopy: Application to Staphylococcal Nuclease, Biochemistry 28(1989), 8972-8979.
-
(1989)
Biochemistry
, vol.28
, pp. 8972-8979
-
-
Kay, L.1
Torchia, E.D.2
Bax, A.A.3
-
22
-
-
0030217514
-
Nuclear magnetic resonance studies of biopolymer dynamics
-
A. G. Palmer III, J. Williams, A. McDermott, Nuclear Magnetic Resonance Studies of Biopolymer Dynamics, J. Phys. Chem. 100(1996), 13293-13310.
-
(1996)
J. Phys. Chem.
, vol.100
, pp. 13293-13310
-
-
Palmer III, A.G.1
Williams, J.2
McDermott, A.3
-
23
-
-
0000660936
-
Mapping of spectral density functions using heteronuclear NMR relaxation experiments
-
J. W. Peng, G. Wagner, Mapping of Spectral Density Functions Using Heteronuclear NMR Relaxation Experiments, J. Magn. Reson. 98(1992), 308-332.
-
(1992)
J. Magn. Reson.
, vol.98
, pp. 308-332
-
-
Peng, J.W.1
Wagner, G.2
-
24
-
-
27244434786
-
Residue specific ribose and nucleobase dynamics of the cUUCGg RNA tetraloop motif by NMR 13C relaxation
-
E. Duchardt, H. Schwalbe, Residue specific ribose and nucleobase dynamics of the cUUCGg RNA tetraloop motif by NMR 13C relaxation, J. Biomol. NMR 32(2005), 295-308.
-
(2005)
J. Biomol. NMR
, vol.32
, pp. 295-308
-
-
Duchardt, E.1
Schwalbe, H.2
-
25
-
-
4243155782
-
NMR characterization of the dynamics of biomacromolecules
-
A. G. Palmer III, NMR Characterization of the Dynamics of Biomacromolecules, Chem. Rev. 104(2004), 3623-3640.
-
(2004)
Chem. Rev.
, vol.104
, pp. 3623-3640
-
-
Palmer III, A.G.1
-
26
-
-
0028282555
-
Backbone dynamics of a free and a phosphopeptide-complexed src homology 2 domain studied by 15N NMR relaxation
-
N. A. Farrow, D. R. Muhandiram, A. U. Singer, S. M. Pascal, C. M. Kay, G Gish, S. E. Shoelson, T. Pawson, J. D. Forman-Kay, L. E. Kay, Backbone dynamics of a Free and a Phosphopeptide-Complexed Src Homology 2 Domain Studied by 15N NMR Relaxation, Biochemistry 33(1994), 5984-6003.
-
(1994)
Biochemistry
, vol.33
, pp. 5984-6003
-
-
Farrow, N.A.1
Muhandiram, D.R.2
Singer, A.U.3
Pascal, S.M.4
Kay, C.M.5
Gish, G.6
Shoelson, S.E.7
Pawson, T.8
Forman-Kay, J.D.9
Kay, L.E.10
-
27
-
-
0029367044
-
Spectral density function mapping using 15N relaxation data exclusively
-
A. N. Farrow, O. Zhang, A. Szabo, D. A. Torchia, L. E. Kay, Spectral density function mapping using 15N relaxation data exclusively., J. Biomol. NMR 6(1995), 153-162.
-
(1995)
J. Biomol. NMR
, vol.6
, pp. 153-162
-
-
Farrow, A.N.1
Zhang, O.2
Szabo, A.3
Torchia, D.A.4
Kay, L.E.5
-
28
-
-
33845553743
-
Model-free approach to the interpretation on nuclear magnetic relaxation in macromolecules. 2. Analysis of experimental results
-
G Lipari, A. Szabo, Model-free approach to the interpretation on Nuclear Magnetic Relaxation in Macromolecules. 2. Analysis of experimental Results., J. Am. Chem. Soc. 104(1982), 4559-4570.
-
(1982)
J. Am. Chem. Soc.
, vol.104
, pp. 4559-4570
-
-
Lipari, G.1
Szabo, A.2
-
29
-
-
33646719091
-
Model-free approach to the interpretation on nuclear magnetic relaxation in macromolecules. 1. Theory and range of validity
-
G Lipari, A. Szabo, Model-free approach to the interpretation on Nuclear Magnetic Relaxation in Macromolecules. 1. Theory and range of validity., J. Am. Chem. Soc. 104(1982), 4546-4559.
-
(1982)
J. Am. Chem. Soc.
, vol.104
, pp. 4546-4559
-
-
Lipari, G.1
Szabo, A.2
-
30
-
-
46949093335
-
Using relaxation dispersion NMR spectroscopy to determine structures of excited, invisible protein states
-
A. L. Hansen, P. Vallurupalli, L. E. Kay, Using relaxation dispersion NMR spectroscopy to determine structures of excited, invisible protein states, J. Biomol. NMR 41(2008), 113-120.
-
(2008)
J. Biomol. NMR
, vol.41
, pp. 113-120
-
-
Hansen, A.L.1
Vallurupalli, P.2
Kay, L.E.3
-
31
-
-
12944278747
-
Off-resonance R1p NMR studies of exchange dynamics in proteins with low-spin-lock fields: An application to a Fyn SH3 domain
-
D. M. Korzhnev, V. Y. Orekhov, L. E. Kay, Off-Resonance R1p NMR studies of Exchange Dynamics in Proteins with Low-Spin-Lock Fields: An Application to a Fyn SH3 Domain, J. Am. Chem. Soc. 127(2005), 713-721.
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 713-721
-
-
Korzhnev, D.M.1
Orekhov, V.Y.2
Kay, L.E.3
-
32
-
-
66149129565
-
Relaxation dispersion NMR spectroscopy as a tool for detailed studies of protein folding
-
P. Neudecker, P. Lundstrom, L. E. Kay, Relaxation Dispersion NMR Spectroscopy as a Tool for Detailed Studies of Protein Folding, Biophys. J. 96(2009), 2045-2054.
-
(2009)
Biophys. J.
, vol.96
, pp. 2045-2054
-
-
Neudecker, P.1
Lundstrom, P.2
Kay, L.E.3
-
33
-
-
0034919305
-
NMR methods for quantifying microsecond-millisecond motions in biological macromolecules
-
A. G. Palmer III, C. D. Kroenke, J. P. Loria, NMR methods for quantifying microsecond-millisecond motions in biological macromolecules, Methods Enzymol. 339(2001), 204-238.
-
(2001)
Methods Enzymol.
, vol.339
, pp. 204-238
-
-
Palmer III, A.G.1
Kroenke, C.D.2
Loria, J.P.3
-
34
-
-
0034664076
-
Active site dynamics in the lead-dependent ribozyme
-
C. G. Hoogstraten, J. R. Wank, A. Pardi, Active Site Dynamics in the Lead-Dependent Ribozyme, Biochemistry 39(2000), 9951-9958.
-
(2000)
Biochemistry
, vol.39
, pp. 9951-9958
-
-
Hoogstraten, C.G.1
Wank, J.R.2
Pardi, A.3
-
35
-
-
26244435237
-
Dynamics and metal ion binding in the U6 RNA intramolecular stem-loop as analyzed by NMR
-
H. Blad, N. J. Reiter, F. Abildgaard, J. L. Markley, S. E. Butcher, Dynamics and metal ion binding in the U6 RNA intramolecular stem-loop as analyzed by NMR, J. Mol. Biol. 353(2005), 540-555.
-
(2005)
J. Mol. Biol.
, vol.353
, pp. 540-555
-
-
Blad, H.1
Reiter, N.J.2
Abildgaard, F.3
Markley, J.L.4
Butcher, S.E.5
-
36
-
-
33645469988
-
A thorough dynamic interpretation of residual dipolar couplings in uniquitin
-
N. A. Lakomek, T. Carlomagno, S. Becker, C. Griesinger, J. Meiler, A thorough dynamic interpretation of residual dipolar couplings in uniquitin, J. Biomol. NMR 34(2006), 101-115.
-
(2006)
J. Biomol. NMR
, vol.34
, pp. 101-115
-
-
Lakomek, N.A.1
Carlomagno, T.2
Becker, S.3
Griesinger, C.4
Meiler, J.5
-
37
-
-
40549108626
-
Characterization of protein dynamics from residual dipolar couplings using the three dimensional Gaussian axial fluctuation model
-
G Bouvignies, P. R. L. Markwick, M. Blackledge, Characterization of protein dynamics from residual dipolar couplings using the three dimensional Gaussian axial fluctuation model, Proteins 71(2008), 353-363.
-
(2008)
Proteins
, vol.71
, pp. 353-363
-
-
Bouvignies, G.1
Markwick, P.R.L.2
Blackledge, M.3
-
38
-
-
25444532318
-
Identification of slow correlated motions in proteins using residual dipolar and hydrogen-bond scalar couplings
-
G Bouvignies, P. Bernado, S. Meier, K Cho, S. Grzesiek, R. Bruschweiler, M. Blackledge, Identification of slow correlated motions in proteins using residual dipolar and hydrogen-bond scalar couplings, Proc. Natl. Acad. Sci. U. S. A. 102(2005), 13885-13890.
-
(2005)
Proc. Natl. Acad. Sci. U. S. A.
, vol.102
, pp. 13885-13890
-
-
Bouvignies, G.1
Bernado, P.2
Meier, S.3
Cho, K.4
Grzesiek, S.5
Bruschweiler, R.6
Blackledge, M.7
-
39
-
-
14844353335
-
Recent progress in the study of biomolecular structure and dynamics in solution from residual dipolar couplings
-
M. Blackledge, Recent Progress in the Study of Biomolecular Structure and Dynamics in Solution from Residual Dipolar Couplings., Prog. Nucl. Mag. Res. Sp. 46(2005), 23-61.
-
(2005)
Prog. Nucl. Mag. Res. Sp.
, vol.46
, pp. 23-61
-
-
Blackledge, M.1
-
40
-
-
34547820982
-
NMR studies of RNA dynamics and structual plasticity using NMR residual dipolar couplings
-
M. Getz, X. Sun, A. Casiano-Negroni, Q. Zhang, H. M. Al-Hashimi, NMR Studies of RNA Dynamics and Structual Plasticity Using NMR Residual Dipolar Couplings, Biopolymers 86(2007), 384-402.
-
(2007)
Biopolymers
, vol.86
, pp. 384-402
-
-
Getz, M.1
Sun, X.2
Casiano-Negroni, A.3
Zhang, Q.4
Al-Hashimi, H.M.5
-
41
-
-
0030612335
-
Use of dipolar H-1-N-15 and H-1-C-13 couplings in the structure determination of magnetically oriented macromolecules in solution
-
N. Tjandra, Use of dipolar H-1-N-15 and H-1-C-13 couplings in the structure determination of magnetically oriented macromolecules in solution, Nat. Struct. Biol. 4(1997), 732-738.
-
(1997)
Nat. Struct. Biol.
, vol.4
, pp. 732-738
-
-
Tjandra, N.1
-
42
-
-
0030722243
-
Direct measurement of distances and angles in biomolecules by NMR in a dilute liquid crystalline medium
-
N. Tjandra, Direct measurement of distances and angles in biomolecules by NMR in a dilute liquid crystalline medium, Science 278(1997), 1111-1114.
-
(1997)
Science
, vol.278
, pp. 1111-1114
-
-
Tjandra, N.1
-
43
-
-
0032999204
-
Refinement of the structure of protein-RNA complexes by residual dipolar coupling analysis
-
P. Bayer, L. Varani, G Varani, Refinement of the structure of protein-RNA complexes by residual dipolar coupling analysis, J. Biomol. NMR 14(1999), 149-155.
-
(1999)
J. Biomol. NMR
, vol.14
, pp. 149-155
-
-
Bayer, P.1
Varani, L.2
Varani, G.3
-
44
-
-
1842862935
-
Anisotropic small amplitude peptide plane dynamics in proteins from residual dipolar couplings
-
P. Bernado, M. Blackledge, Anisotropic Small Amplitude Peptide Plane Dynamics in Proteins from Residual Dipolar Couplings, J. Am. Chem. Soc. 126(2004), 4907-4920.
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 4907-4920
-
-
Bernado, P.1
Blackledge, M.2
-
45
-
-
0034820148
-
Model-free approach to the dynamics interpretation of residual dipolar couplings in globular proteins
-
J. Meiler, J. J. Prompers, W. Peti, C. Griesinger, R. Bruschweiler, Model-Free Approach to the Dynamics Interpretation of Residual Dipolar Couplings in Globular Proteins., J. Am. Chem. Soc. 123(2001), 6098-6107.
-
(2001)
J. Am. Chem. Soc.
, vol.123
, pp. 6098-6107
-
-
Meiler, J.1
Prompers, J.J.2
Peti, W.3
Griesinger, C.4
Bruschweiler, R.5
-
46
-
-
14844363428
-
Protein backbone dynamcs from N-H dipolar couplings in partially aligned systems: A comparison of motional models in the presences of structural noise
-
G. Bouvignies, P. Bernadó, M. Blackledge, Protein backbone dynamcs from N-H dipolar couplings in partially aligned systems: a comparison of motional models in the presences of structural noise, J. Magn. Reson. 173(2005), 328-338.
-
(2005)
J. Magn. Reson.
, vol.173
, pp. 328-338
-
-
Bouvignies, G.1
Bernadó, P.2
Blackledge, M.3
-
47
-
-
45849131354
-
Recognition dynamics up to microseconds revealed from an RDC-derived ubiquitin ensemble in solution
-
O. F. Lange, N.-A. Lakomek, C. Fares, G. F. Schroder, K. F. A. Walter, S. Becker, J. Meiler, H. Grubmuller, C. Griesinger, B. L. de Groot, Recognition Dynamics Up to Microseconds Revealed from an RDC-Derived Ubiquitin Ensemble in Solution, Science 320(2008), 1471-1475.
-
(2008)
Science
, vol.320
, pp. 1471-1475
-
-
Lange, O.F.1
Lakomek, N.-A.2
Fares, C.3
Schroder, G.F.4
Walter, K.F.A.5
Becker, S.6
Meiler, J.7
Grubmuller, H.8
Griesinger, C.9
De Groot, B.L.10
-
48
-
-
0000411902
-
NMR order parameters of biomolecules: A new analytical representation and application to the gaussian axial fluctuation model
-
R. Bruschweiler, P. E. Wright, NMR Order Parameters of Biomolecules: A New Analytical Representation and Application to the Gaussian Axial Fluctuation Model, J. Am. Chem. Soc. 116(1994), 8426-8427.
-
(1994)
J. Am. Chem. Soc.
, vol.116
, pp. 8426-8427
-
-
Bruschweiler, R.1
Wright, P.E.2
-
49
-
-
0032581920
-
Anisotropic intramolecular backbone dynamics of ubiquitin characterized by NMR relaxation and MD computer simulation
-
S. F. Lienin, T. Bremi, B. Brutscher, R. Bruschweiler, R. R. Ernst, Anisotropic Intramolecular Backbone Dynamics of Ubiquitin Characterized by NMR Relaxation and MD Computer Simulation, J. Am. Chem. Soc. 120(1998), 9870-9879.
-
(1998)
J. Am. Chem. Soc.
, vol.120
, pp. 9870-9879
-
-
Lienin, S.F.1
Bremi, T.2
Brutscher, B.3
Bruschweiler, R.4
Ernst, R.R.5
-
50
-
-
38349001213
-
Comparison of alignment tensors generated for native tRNAVal using magnetic fields and liquid crystalline media
-
M. P. Latham, P. Hanson, D. J. Brown, A. Pardi, Comparison of alignment tensors generated for native tRNAVal using magnetic fields and liquid crystalline media, J. Biomol. NMR 40(2008), 83-94.
-
(2008)
J. Biomol. NMR
, vol.40
, pp. 83-94
-
-
Latham, M.P.1
Hanson, P.2
Brown, D.J.3
Pardi, A.4
-
51
-
-
37549017736
-
Visualizing spatially correlated dynamics that directs RNA conformational transitions
-
Q. Zhang, A. C. Stelzer, C. K. Fisher, H. M. Al-Hashimi, Visualizing spatially correlated dynamics that directs RNA conformational transitions, Nature 450(2007), 1263-1268.
-
(2007)
Nature
, vol.450
, pp. 1263-1268
-
-
Zhang, Q.1
Stelzer, A.C.2
Fisher, C.K.3
Al-Hashimi, H.M.4
-
52
-
-
0036290269
-
Concerted motions in HIV-1 TAR RNA may allow access to bound state conformations: RNA dynamics from NMR residual dipolar couplings
-
H. M. Al-Hashimi, Y. Gosser, A. Gorin, W. Hu, A. Majumdar, D. J. Patel., Concerted Motions in HIV-1 TAR RNA May Allow Access to Bound State Conformations: RNA Dynamics from NMR Residual Dipolar Couplings, J. Mol. Biol. 315(2002), 95-102.
-
(2002)
J. Mol. Biol.
, vol.315
, pp. 95-102
-
-
Al-Hashimi, H.M.1
Gosser, Y.2
Gorin, A.3
Hu, W.4
Majumdar, A.5
Patel, D.J.6
-
53
-
-
31944446215
-
Resolving the motional modes that code for RNA adaption
-
Q. Zhang, X. Sun, E. D. Watt, H. M. Al-Hashimi, Resolving the Motional Modes That Code for RNA Adaption, Science 311(2006), 653-656.
-
(2006)
Science
, vol.311
, pp. 653-656
-
-
Zhang, Q.1
Sun, X.2
Watt, E.D.3
Al-Hashimi, H.M.4
-
54
-
-
1842578995
-
Argininamide binding arrests global motions in HIV-1 TAR RNA: Comparison with Mg+2-induced conformational stabilization
-
S. W. Pitt, A. Majumdar, A. Serganov, D. J. Patel., H. M. Al-Hashimi, Argininamide Binding Arrests Global Motions in HIV-1 TAR RNA: Comparison with Mg+2-induced Conformational Stabilization, J. Mol. Biol. 338(2004), 7-16.
-
(2004)
J. Mol. Biol.
, vol.338
, pp. 7-16
-
-
Pitt, S.W.1
Majumdar, A.2
Serganov, A.3
Patel, D.J.4
Al-Hashimi, H.M.5
-
55
-
-
0032042263
-
Measurement of J and Dipolar couplings from simplified two-dimensional NMR spectra
-
M. Ottiger, D. F., A. Bax, Measurement of J and Dipolar Couplings from Simplified Two-Dimensional NMR Spectra, J. Magn. Reson. 131(1998), 373-378.
-
(1998)
J. Magn. Reson.
, vol.131
, pp. 373-378
-
-
Ottiger, M.1
Bax, D.F.A.2
-
56
-
-
34548525797
-
13C-detected NMR experiments for measuring chemical shifts and coupling constants in nucleic acid bases
-
13C-detected NMR experiments for measuring chemical shifts and coupling constants in nucleic acid bases, J. Biomol. NMR 39(2007), 153-163.
-
(2007)
J. Biomol. NMR
, vol.39
, pp. 153-163
-
-
Fiala, R.1
Sklenar, V.2
-
57
-
-
19744374551
-
Accurate measurement of 15N-13C residual dipolar couplings in nucleic acids
-
C. P. Jaroniec, J. Boisbouvier, I. Tworowska, E. P. Nikonowicz, A. Bax, Accurate measurement of 15N-13C residual dipolar couplings in nucleic acids, J. Biomol. NMR 31(2005), 231-241.
-
(2005)
J. Biomol. NMR
, vol.31
, pp. 231-241
-
-
Jaroniec, C.P.1
Boisbouvier, J.2
Tworowska, I.3
Nikonowicz, E.P.4
Bax, A.5
-
58
-
-
20444447191
-
Monitoring tat peptide binding to TAR RNA by solid-state 31P-19F REDOR NMR
-
G. L. Olsen, T. E. Edwards, P. Deka, G Varani, S. T. Sigurdsson, G. P. Drobny, Monitoring tat peptide binding to TAR RNA by solid-state 31P-19F REDOR NMR, Nucleic Acids Res. 33(2005), 3447-3454.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 3447-3454
-
-
Olsen, G.L.1
Edwards, T.E.2
Deka, P.3
Varani, G.4
Sigurdsson, S.T.5
Drobny, G.P.6
-
61
-
-
36749105209
-
Deuteron spin alignment: A probe for studying slow motions in solids and solid polymers
-
H. W. Spiess, Deuteron Spin Alignment: A probe for studying slow motions in solids and solid polymers, J. Chem. Phys. 72(1980), 6755-6762.
-
(1980)
J. Chem. Phys.
, vol.72
, pp. 6755-6762
-
-
Spiess, H.W.1
-
62
-
-
0001959273
-
Orientational distributions in partially ordered solids as determined from NMR and ESR line shapes
-
R. Hentschel, J. Schlitter, H. Sillescu, H. W. Spiess, Orientational distributions in partially ordered solids as determined from NMR and ESR line shapes, J. Chem. Phys. 68(1978), 56-66.
-
(1978)
J. Chem. Phys.
, vol.68
, pp. 56-66
-
-
Hentschel, R.1
Schlitter, J.2
Sillescu, H.3
Spiess, H.W.4
-
63
-
-
0000696047
-
Molecular motion in solid polyethylene as studied by wide line NMR spectroscopy
-
D. Hentschel, H. Sillescu, H. W. Spiess, Molecular motion in solid polyethylene as studied by wide line NMR spectroscopy, Die Makromolekulare Chemie 180(1979), 241-249.
-
(1979)
Die Makromolekulare Chemie
, vol.180
, pp. 241-249
-
-
Hentschel, D.1
Sillescu, H.2
Spiess, H.W.3
-
64
-
-
0035899997
-
Dynamic impact of methylation at the M. HhaI Target Site: A solid-state deuterium NMR study
-
G. A. Meints, G. P. Drobny, Dynamic Impact of Methylation at the M. HhaI Target Site: A Solid-State Deuterium NMR Study, Biochemistry 40(2001), 12436-12443.
-
(2001)
Biochemistry
, vol.40
, pp. 12436-12443
-
-
Meints, G.A.1
Drobny, G.P.2
-
65
-
-
0035850527
-
Local dynamics of the CpG step in a DNA crystal
-
M. E. Hatcher, I. LeTrong, R. Stenkamp, G. P. Drobny, Local Dynamics of the CpG Step in a DNA Crystal, J. Am. Chem. Soc. 123(2001), 8874-8875.
-
(2001)
J. Am. Chem. Soc.
, vol.123
, pp. 8874-8875
-
-
Hatcher, M.E.1
LeTrong, I.2
Stenkamp, R.3
Drobny, G.P.4
-
66
-
-
0034712712
-
The dynamic impact of CpG methylation in DNA
-
K. B. Geahigan, G. A. Meints, M. E. Hatcher, J. Orban, G. P. Drobny, The Dynamic Impact of CpG Methylation in DNA, Biochemistry 39(2000), 4939-4946.
-
(2000)
Biochemistry
, vol.39
, pp. 4939-4946
-
-
Geahigan, K.B.1
Meints, G.A.2
Hatcher, M.E.3
Orban, J.4
Drobny, G.P.5
-
68
-
-
44949090606
-
Solid-state nuclear magnetic resonance spectroscopy studies of furanose ring dynamics in the DNA HhaI binding site
-
G. A. Meints, P. A. Miller, K. Pederson, Z. Shajani, G. P. Drobny, Solid-State Nuclear Magnetic Resonance Spectroscopy Studies of Furanose Ring Dynamics in the DNA HhaI Binding Site, J. Am. Chem. Soc. 130(2008), 7305-7314.
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 7305-7314
-
-
Meints, G.A.1
Miller, P.A.2
Pederson, K.3
Shajani, Z.4
Drobny, G.P.5
-
69
-
-
47349132621
-
Backbone dynamics in the DNA HhaI protein binding site
-
K. Pederson, G. A. Meints, Z. Shajani, P. Miller, G. P. Drobny, Backbone Dynamics in the DNA HhaI Protein Binding Site, J. Am. Chem. Soc. 130(2008), 9072-9079.
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 9072-9079
-
-
Pederson, K.1
Meints, G.A.2
Shajani, Z.3
Miller, P.4
Drobny, G.P.5
-
71
-
-
84939988155
-
Deuterium relaxation in molecular solids
-
R. R. Vold, R. L. Vold, Deuterium Relaxation in Molecular Solids, Adv. Magn. Opt. Reson. 16(1991), 85-171.
-
(1991)
Adv. Magn. Opt. Reson.
, vol.16
, pp. 85-171
-
-
Vold, R.R.1
Vold, R.L.2
-
72
-
-
0002646990
-
Broadband and narrowband composite excitation sequences
-
S. Wimperis, Broadband and Narrowband Composite Excitation Sequences, J. Magn. Reson. 86(1990), 46-59.
-
(1990)
J. Magn. Reson.
, vol.86
, pp. 46-59
-
-
Wimperis, S.1
-
73
-
-
0011661344
-
Broadband composite excitation sequences for creating quadrupolar order in 2H NMR
-
G. L. Hoatson, Broadband Composite Excitation Sequences for Creating Quadrupolar Order in 2H NMR, J. Magn. Reson. 94(1991), 152-159.
-
(1991)
J. Magn. Reson.
, vol.94
, pp. 152-159
-
-
Hoatson, G.L.1
-
74
-
-
0002769818
-
Deuterium NMR studies of dynamics in solids and liquid crystals
-
Tycko, R. ed., Kluwer Academic Publishers, Dordrecht; Boston
-
R. L. Vold. (1994) Deuterium NMR studies of dynamics in solids and liquid crystals. In Tycko, R. (ed.), Nuclear magnetic resonance probes of molecular dynamics. Kluwer Academic Publishers, Dordrecht; Boston, Vol. 8, pp. 27-112.
-
(1994)
Nuclear Magnetic Resonance Probes of Molecular Dynamics
, vol.8
, pp. 27-112
-
-
Vold, R.L.1
-
75
-
-
0028864394
-
The structure of the human immunodeficiency virus type-1 TAR RNA reveals principles of RNA recognition by Tat protein
-
F. Aboul-ela, J. Karn, G. Varani, The structure of the human immunodeficiency virus type-1 TAR RNA reveals principles of RNA recognition by Tat protein, J. Mol. Biol. 253(1995), 313-332.
-
(1995)
J. Mol. Biol.
, vol.253
, pp. 313-332
-
-
Aboul-ela, F.1
Karn, J.2
Varani, G.3
-
76
-
-
0029852357
-
Structure of HIV-1 TAR RNA in the absence of ligands reveals a novel conformation of the trinucleotide bulge
-
F. Aboul-ela, J. Karn, G. Varani, Structure of HIV-1 TAR RNA in the absence of ligands reveals a novel conformation of the trinucleotide bulge, Nucleic Acids Res. 24(1996), 3974-3981.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 3974-3981
-
-
Aboul-ela, F.1
Karn, J.2
Varani, G.3
-
77
-
-
2942560499
-
A precise boundary element method for macromolecular transport properties
-
S. R. Aragon, A Precise Boundary Element Method for Macromolecular Transport Properties, J. Comput. Chem. 25(2004), 1191-1205.
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1191-1205
-
-
Aragon, S.R.1
-
78
-
-
33846082746
-
Preaveraged hydrodynamic interaction revisited via boundary element computations
-
S. R. Aragon, D. J. Hahn, Preaveraged Hydrodynamic Interaction Revisited via Boundary Element Computations, J. Chem. Theory. Comput. 2(2006), 12-17.
-
(2006)
J. Chem. Theory. Comput.
, vol.2
, pp. 12-17
-
-
Aragon, S.R.1
Hahn, D.J.2
-
79
-
-
0346436003
-
Theory of relaxation of quadrupolar nuclei in deformable molecules in isotropic solutions. Applications to DNA
-
J. M. Schurr, B. S. Fujimoto, S. Nuutero, Theory of Relaxation of Quadrupolar Nuclei in Deformable Molecules in Isotropic Solutions. Applications to DNA, J. Magn. Reson. 106(1994), 1-22.
-
(1994)
J. Magn. Reson.
, vol.106
, pp. 1-22
-
-
Schurr, J.M.1
Fujimoto, B.S.2
Nuutero, S.3
-
80
-
-
0034328380
-
HYDRONMR: Prediction of NMR relaxation of globular proteins from atomic-level structures and hydrodynamic calculations
-
J. G Torre, M. L. Huertas, B. Carrasco, HYDRONMR: Prediction of NMR Relaxation of Globular Proteins from Atomic-Level Structures and Hydrodynamic Calculations, J. Magn. Reson 147(2000), 138-146.
-
(2000)
J. Magn. Reson
, vol.147
, pp. 138-146
-
-
Torre, J.G.1
Huertas, M.L.2
Carrasco, B.3
-
81
-
-
84865472991
-
Unifying solution and solid-state NMR studies of nucleic acid dynamics
-
K. Pederson, D. Echodu, P. Emani, G Olsen, M. FJ. Bardaro, Z. Shajani, G Meints, P. Miller, G Varani, G. P. Drobny. (2010) Unifying Solution and Solid-State NMR Studies of Nucleic Acid Dynamics. Encyclopedia of Magnetic Resonance.
-
(2010)
Encyclopedia of Magnetic Resonance
-
-
Pederson, K.1
Echodu, D.2
Emani, P.3
Olsen, G.4
Bardaro, M.F.J.5
Shajani, Z.6
Meints, G.7
Miller, P.8
Varani, G.9
Drobny, G.P.10
-
82
-
-
18744411499
-
The acquisition of multidimensional NMR spectra within a single scan
-
L. Frydman, T. Scherf, A. Lupulescu, The acquisition of multidimensional NMR spectra within a single scan, Proc. Natl. Acad. Sci. U. S. A. 99(2002), 15858-15962.
-
(2002)
Proc. Natl. Acad. Sci. U. S. A.
, vol.99
, pp. 15858-15962
-
-
Frydman, L.1
Scherf, T.2
Lupulescu, A.3
-
83
-
-
0042868578
-
Principles and features of single-scan two-dimensional NMR spectroscopy
-
L. Frydman, A. Lupulescu, T. Scherf, Principles and Features of Single-Scan Two-Dimensional NMR Spectroscopy, J. Am. Chem. Soc. 125(2003), 9204-9217.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 9204-9217
-
-
Frydman, L.1
Lupulescu, A.2
Scherf, T.3
-
84
-
-
31444443367
-
Real-time monitoring of chemical transformations by ultrafast 2D NMR spectroscopy
-
M. Gal, M. Mishkovsky, L. Frydman, Real-Time Monitoring of Chemical Transformations by Ultrafast 2D NMR Spectroscopy, J. Am. Chem. Soc. 128(2006), 951-956.
-
(2006)
J. Am. Chem. Soc.
, vol.128
, pp. 951-956
-
-
Gal, M.1
Mishkovsky, M.2
Frydman, L.3
|