Unifying Solution and Solid-State NMR Studies of Nucleic Acid Dynamics

eMagRes

Volumn 2010, Issue , 2010, Pages

  Pederson, Kari ^a   Echodu, Dorothy C ^a   Emani, Prashant ^a   Olsen, Greg L ^a   Bardaro, Michael F ^a   Shajani, Zahra ^a   Meints, Gary A ^a   Miller, Paul A ^a   Varani, Gabriele ^a   Drobny, Gary P ^a  

^a UNIVERSITY OF WASHINGTON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOMOLECULES; CONFORMATIONS; DYNAMICS; PROTEINS; RISK ASSESSMENT; RNA; SOLID SOLUTIONS;

CONFORMATIONAL CHANGE; DNA FUNCTION; MOTION TRANSITION; NMR STUDIES; PROTEIN MOLECULES; PROTEIN MOTION; SMALL MOLECULES; SOLID STATE NMR; SOLUTION STATE NMR; TIME-SCALES;

NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY;

EID: 84865472991     PISSN: None     EISSN: 20556101     Source Type: Book Series    
DOI: 10.1002/9780470034590.emrstm1173     Document Type: Article

References (61)

1. V. A. Feher and J. Cavanagh, Nature, 1999, 400, 289–293.
2. A. L. Lee and A. J. Wand, Nature, 2001, 411, 501–504.
3. A. L. Lee, S. A. Kinnear, and A. J. Wand, Nat. Struct. Biol., 2000, 7, 72–77.
4. E. Z. Eisenmesser, D. A. Bosco, M. Akke, and D. Kern, Science, 2002, 295, 1520–1523.
5. P. J. Finerty Jr, R. Muhandiram, and J. D. Forman-Kay, J. Mol. Biol., 2002, 322, 605–620.
6. L. E. Kay, D. R. Muhandiram, G. Wolf, S. E. Shoelson, and J. D. Forman-Kay, Nat. Struct. Biol., 1998, 5, 156–163.
7. K. Sugase, H. J. Dyson, and P. E. Wright, Nature, 2007, 447, 1021–1027.
8. K. K. Frederick, M. S. Marlow, K. G. Valentine, and A. J. Wand, Nature, 2007, 448, 325–330.
9. E. Z. Eisenmesser, O. Millet, W. Labeikovsky, D. M. Korzhnev, M. Wolf-Watz, D. A. Bosco, J. J. Skalicky, L. E. Kay, and D. Kern, Nature, 2005, 438, 117–121.
10. N. Leulliot and G. Varani, Biochemistry, 2001, 40, 7947–7979, 7956.
11. J. R. Williamson, Nat. Struct. Biol., 2000, 7, 834–837.
12. H. M. Al-Hashimi, Biopolymers, 2007, 86, 345–347.
13. A. G. Palmer III, J. Williams, and A. McDermott, J. Phys. Chem., 1996, 100, 13293–13310.
14. G. L. Olsen, M. F. Bardaro Jr, D. C. Echodu, and G. P. Drobny, J. Biomol. NMR, 2009, 45, 133–142.
15. V. Agarwal, Y. Xue, B. Reif, and N. R. Skrynnikov, J. Am. Chem. Soc., 2008, 130, 16611–16621.
16. P. A. Miller, Z. Shajani, G. A. Meints, D. Caplow, G. Goobes, G. Varani, and G. P. Drobny, J. Am. Chem. Soc., 2006, 128, 15970–15971.
17. G. L. Olsen, D. C. Echodu, Z. Shajani, B. J. M. F. G. Varani, and G. P. Drobny, J. Am. Chem. Soc., 2008, 130, 2896–2897.
18. R. R. Vold and R. L. Vold, Adv. Magn. Opt. Reson., 1991, 16, 85–171.
19. S. Torchia and A. Szabo, J. Magn. Reson., 1982, 49, 107–121.
20. A. Steigel, H. W. Spiess, Dynamic NMR Spectroscopy, Springer-Verlag: Berlin, 1978, p 55–214.
21. J. Boisbouvier, Z. Wu, A. Ono, M. Kainosho, and A. Bax, J. Biomol. NMR, 2003, 27, 133–142.
22. M. M. Tirado and J. Garcia de la Torre, J. Chem. Phys., 1980, 73, 1986–1993.
23. L. G. Werbelow and D. M. Grant, J. Chem. Phys., 1975, 63, 4742–4749.
24. R. E. London and J. Avitabile, J. Chem. Phys., 1976, 65, 2443–2450.
25. G. A. Meints, P. A. Miller, K. Pederson, Z. Shajani, and G. P. Drobny, J. Am. Chem. Soc., 2008, 130, 7305–7314.
26. Z. Shajani and G. Varani, Biochemistry, 2008, 47, 7617–7625.
27. M. F. Bardaro Jr, Z. Shajani, K. Patora-Komisarska, J. A. Robinson, and G. Varani, Nucleic Acids Res., 2009, 37, 1529–1540.
28. S. Klimasauskas, S. Kumar, R. J. Roberts, and X. Cheng, Cell, 1994, 76, 357–369.
29. R. E. London and J. Avitabile, J. Am. Chem. Soc., 1977, 99, 7765–7776.
30. T. M. Alam, J. Orban, and G. P. Drobny, Biochemistry, 1991, 30, 9229–9237.
31. G. A. Meints and G. P. Drobny, Biochemistry, 2001, 40, 12436–12443.
32. D. Echodu, G. Goobes, Z. Shajani, K. Pederson, G. Meints, G. Varani, and G. Drobny, J. Phys. Chem. B, 2008, 112, 13934–13944.
33. G. A. Meints, T. Karlsson, and G. P. Drobny, J. Am. Chem. Soc., 2001, 123, 10030–10038.
34. C. Altona and M. Sundaralingam, J. Am. Chem. Soc., 1972, 94, 8205–8212.
35. M. Levitt and A. Warshel, J. Am. Chem. Soc., 1978, 100, 2607–2613.
36. W. K. Olson, J. Am. Chem. Soc., 1982, 104, 278–286.
37. P. Herzyk, A. Rabczenko, J. Chem. Soc., Faraday Trans. 2 1985, 1925–1930.
38. R. R. Vold and R. L. Vold, J. Chem. Phys., 1988, 88, 1443–1457.
39. G. Agostini, P. L. Nordio, G. Rigatti, and U. Segre, Atti Accad. Naz. Lincei., Ser. 8, 1975, 13, 1.
40. J. H. Freed, J. Chem. Phys., 1977, 66, 4183–4199.
41. S. Chandrasekhar, Rev. Mod. Phys., 1943, 15, 1–89.
42. J. D. Puglisi, R. Tan, B. J. Calnan, A. D. Frankel, and J. R. Williamson, Science, 1992, 257, 76–80.
43. F. Aboul-ela, J. Karn, and G. Varani, J. Mol. Biol., 1995, 253, 313–332.
44. J. A. Jaeger and I. Tinoco Jr., Biochemistry, 1993, 32, 12522–12530.
45. J. D. Puglisi, L. Chen, A. D. Frankel, and J. R. Williamson, Proc. Natl. Acad. Sci. U.S.A., 1993, 90, 3680–3684.
46. F. Aboul-ela, J. Karn, and G. Varani, Nucleic Acids Res., 1996, 24, 3974–3981.
47. K. S. Long and D. M. Crothers, Biochemistry, 1999, 38, 10059–10069.
48. F. Aboul-ela and G. Varani, J. Mol. Struct. THEOCHEM, 1998, 423, 29–39.
49. G. L. Olsen, M. F. Bardaro Jr, D. C. Echodu, G. P. Drobny, G. Varani, J. Am. Chem. Soc. 2010, 132, 303–308.
50. Q. Zhang, A. C. Stelzer, C. K. Fisher, and H. M. Al-Hashimi, Nature, 2007, 450, 1263–1267.
51. L. S. Batchelder, C. E. Sullivan, L. W. Jelinksi, and D. A. Torchia, Proc. Natl. Acad. Sci. U.S.A., 1982, 79, 386–389.
52. N. F. Breen, T. Weidner, K. Li, D. G. Castner, and G. P. Drobny, J. Am. Chem. Soc., 2009, 131, 14148–14149.
53. D. M. Korzhnev, V. Y. Orekhov, and L. E. Kay, J. Am. Chem. Soc., 2005, 127, 713–721.
54. D. F. Hansen, P. Vallurupalli, and L. E. Kay, J. Biomol. NMR, 2008, 41, 113–120.
55. P. Neudecker, P. Lundström, and L. E. Kay, Biophys. J., 2009, 96, 2045–2054.
56. T. A. Alam and G. P. Drobny, Chem. Rev., 1991, 91, 1545–1590.
57. J. Gdl. Torre, M. L. Huertas, and B. Carrasco, J. Magn. Reson., 2000, 147, 138–146.
58. D. Echodu, P. Emani, G.L. Olsen, and M.F.J. Bardaro, G. Varani, G.P. Drobny, J. Am. Chem. Soc., 2010, Submitted.
59. V. Wong, D. A. Case, and A. Szabob, Proc. Natl. Acad. Sci. U.S.A., 2009, 106, 11016–11021.
60. G. Lipari and A. Szabo, J. Am. Chem. Soc., 1982, 104, 4559–4570.
61. G. Lipari and A. Szabo, J. Am. Chem. Soc., 1982, 104, 4546–4559.