Imaging cells and sub-cellular structures with ultrahigh resolution full-field X-ray microscopy

Biotechnology Advances

Volumn 31, Issue 3, 2013, Pages 375-386

  Chien, C C ^a,b   Tseng, P Y ^a   Chen, H H ^a   Hua, T E ^a   Chen, S T ^a   Chen, Y Y ^a   Leng, W H ^a   Wang, C H ^a   Hwu, Y ^a,b,c,d   Yin, G C ^e   Liang, K S ^f   Chen, F R ^b   Chu, Y S ^g   Yeh, H I ^h   Yang, Y C ^h   Yang, C S ⁱ   Zhang, G L ^j   Je, J H ^k   Margaritondo, G ^l  

^a INSTITUTE OF PHYSICS   (Taiwan)

^b NATIONAL TSING HUA UNIVERSITY   (Taiwan)

^c NATIONAL TAIWAN OCEAN UNIVERSITY   (Taiwan)

^d NATIONAL CHENG KUNG UNIVERSITY   (Taiwan)

^e NATIONAL SYNCHROTRON RADIATION RESEARCH CENTER   (Taiwan)

^f NATIONAL CHIAO TUNG UNIVERSITY   (Taiwan)

^g BROOKHAVEN NATIONAL LABORATORY   (United States)

^h MACKAY MEMORIAL HOSPITAL   (Taiwan)

ⁱ NATIONAL HEALTH RESEARCH INSTITUTES   (Taiwan)

^j SHANGHAI INSTITUTE OF APPLIED PHYSICS   (China)

^k Pohang University of Science and Technology (POSTECH)   (South Korea)

^l EPFL   (Switzerland)

more..

Author keywords

Fresnel phase zone plate; Phase contrast radiology; Subcellular organelle; X ray microscopy

Indexed keywords

BIOMEDICAL RESEARCH; FRESNEL PHASE ZONE PLATES; PHASE CONTRASTS; SUBCELLULAR ORGANELLES; TOMOGRAPHIC RECONSTRUCTION; ULTRAHIGH RESOLUTION; WAVE PROPAGATION ALGORITHM; X RAY MICROSCOPY;

DENSITY MEASUREMENT (OPTICAL); RADIOLOGY; REFRACTIVE INDEX; TISSUE; WAVE PROPAGATION; X RAY MICROSCOPES;

X RAYS;

GOLD; METAL NANOPARTICLE;

ALGORITHM; ANATOMY; BIOTECHNOLOGY; EXPERIMENTAL STUDY; HOMINID; IMAGING METHOD; RADIOGRAPHY; RODENT; WAVE PROPAGATION;

ALGORITHM; ANIMAL; AORTA; ARTICLE; BAGG ALBINO MOUSE; C57BL MOUSE; CELL STRUCTURE; COMPUTER ASSISTED TOMOGRAPHY; CYTOLOGY; EQUIPMENT; EQUIPMENT DESIGN; EXPERIMENTAL NEOPLASM; HELA CELL; HUMAN; IMAGE PROCESSING; METHODOLOGY; MICRORADIOGRAPHY; MICROSCOPY; MOUSE; PATHOLOGY; SYNCHROTRON; X RAY; ZEBRA FISH;

ALGORITHMS; ANIMALS; AORTA; CELLULAR STRUCTURES; EQUIPMENT DESIGN; GOLD; HELA CELLS; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; METAL NANOPARTICLES; MICE; MICE, INBRED BALB C; MICE, INBRED C57BL; MICRORADIOGRAPHY; MICROSCOPY; NEOPLASMS, EXPERIMENTAL; SYNCHROTRONS; TOMOGRAPHY, X-RAY COMPUTED; X-RAYS; ZEBRAFISH;

EID: 84865489036     PISSN: 07349750     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.biotechadv.2012.04.005     Document Type: Article

References (50)

1. Allen L.J., McBride W., O'Leary N.L., Oxley M.P. Exit wave reconstruction at atomic resolution. Ultramicroscopy 2004, 100:91-104.
2. Allen L.J., McBride W., Oxley M.P. Exit wave reconstruction using soft X-rays. Opt Commun 2004, 233:77-82.
3. Anastasio M.A., Carlo F.D., Pan X. Phase-contrast tomography and the local tomography problem. Proc SPIE 2003, 5030:120-126.
4. Bachim B.L., Gaylord T.K. Polarization-dependent loss and birefringence in long-period fiber gratings. Appl Opt 2003, 42:6816-6823.
5. Baik S., Kim H.S., Jeong M.H., Lee C.S., Je J.H., Hwu Y., et al. International consortium on phase contrast imaging and radiology beamline at the Pohang Light Source. Rev Sci Instrum 2004, 75:4355-4358.
6. Barty A., Nugent K.A., Paganin D., Roberts A. Quantitative optical phase microscopy. Opt Lett 1998, 23:817-819.
7. Barty A., Nugent K.A., Roberts A., Paganin D. Quantitative phase tomography. Opt Commun 2000, 175:329-336.
8. Bech M., Bunk O., David C., Kraft P., Brönnimann C., Eikenberry E.F., et al. X-ray imaging with the PILATUS 100k detector. Appl Radiat Isot 2008, 66:474-478.
9. Blackburn J.P., Peters N.S., Yeh H.I., Rothery S., Green C.R., Severs N.J. Upregulation of connexin43 gap junctions during early stages of human coronary atherosclerosis. Arterioscler Thromb Vasc Biol 1995, 15:1219-1228.
10. Chen Y.T., Lo T.N., Chiu C.W., Wang J.Y., Wang C.L., Liu C.J., et al. Fabrication of high-aspect-ratio Fresnel zone plates by e-beam lithography and electroplating. J Synchrotron Radiat 2008, 15:170-175.
11. Chen Y.T., Lo T.N., Chu Y.S., Yi J., Liu C.J., Wang J.Y., et al. Full-field hard X-ray microscopy below 30 nm: a challenging nanofabrication achievement. Nanotechnology 2008, 19.
12. Chen T.Y., Chen Y.T., Wang C.L., Kempson I.M., Lee W.K., Chu Y.S., et al. Full-field microimaging with 8keV X-rays achieves a spatial resolutions better than 20nm. Opt Express 2011, 19:19919-19924.
13. Chen Y.T., Chen T.Y., Yi J.M., Chu Y.S., Lee W.K., Wang C.L., et al. Hard X-ray Zernike microscopy reaches 30nm resolution. Opt Lett 2011, 3:1269-1271.
14. Chen Y.T., Chen T.Y., Yi J.M., Chu Y.S., Lee W.K., Wang C.L., et al. Hard X-ray Zernike microscopy reaches 30nm resolution. Opt Lett 2011, 36:1269-1271.
15. Chien C.C., Wang C.H., Wang C.L., Li E.R., Lee K.H., Hwu Y., et al. Synchrotron microangiography studies of angiogenesis in mice with microemulsions and gold nanoparticles. Anal Bioanal Chem 2010, 397:2109-2116.
16. Chu Y.S., Yi J.M., De Carlo F., Shen Q., Lee W.K., Wu H.J., et al. Hard-X-ray microscopy with Fresnel zone plates reaches 40nm Rayleigh resolution. Appl Phys Lett 2008, 92.
17. Cloetens P., Ludwig W., Boller E., Helfen L., Salvo L., Mache R., et al. Quantitative phase contrast tomography using coherent synchrotron radiation. Proc SPIE 2002, 4503:82-91.
18. Faridani A., Finch D.V., Ritman E.L., Smith K.T. Local tomography II. SIAM J Appl Math 1997, 57:1095-1127.
19. Fischer R.S., Wu Y., Kanchanawong P., Shroff H., Waterman C.M. Microscopy in 3D: a biologist's toolbox. Trends Cell Biol 2011, 21:682-691.
20. Hsieh W.-K., Chen F.-R., Kai J.-J., Kirkland A.I. Resolution extension and exit wave reconstruction in complex HREM. Ultramicroscopy 2004, 98:99-114.
21. Hwu Y., Tsai W.L., Groso A., Margaritondo G., Je J.H. Coherence-enhanced synchrotron radiology: simple theory and practical applications. J Phys D: Appl Phys 2002, 35:R105-R120.
22. Hwu Y., Tsai W.L., Chang H.M., Yeh H.I., Hsu P.C., Yang Y.C., et al. Imaging cells and tissues with refractive index radiology. Biophys J 2004, 87:4180-4187.
23. Jacobsen C., Beetz T., Feser M., Osanna A., Stein A., Wirick S. Spectromicroscopy of biological and environmental systems at Stony Brook. Surf Rev Lett 2002, 9:185-191.
24. Jiang H., Song C., Chen C.C., Xu R., Raines K.S., Fahimian B.P., et al. Quantitative 3D imaging of whole, unstained cells by using X-ray diffraction microscopy. Proc Natl Acad Sci U S A 2010, 107:11234-11239.
25. Kirz J., Ade H., Anderson E., Buckley C., Chapman H., Howells M., et al. New results in soft X-ray microscopy. Nucl Instrum Methods B 1994, 87:92-97.
26. Lai S.F., Chen W.C., Wang C.L., Chen H.H., Chen S.T., Chien C.C., et al. One-pot tuning of au nucleation and growth: from nanoclusters to nanoparticles. Langmuir 2011, 27:8424-8429.
27. Larabell C.A., Nugent K.A. Imaging cellular architecture with X-rays. Curr Opin Struct Biol 2010, 20:623-631.
28. Liu C.J., Wang C.H., Chien C.C., Yang T.Y., Chen S.T., Leng W.H., et al. Enhanced X-ray irradiation-induced cancer cell damage by gold nanoparticles treated by a new synthesis method of polyethylene glycol modification. Nanotechnology 2008, 19.
29. Liu C.J., Wang C.H., Chen S.T., Chen H.H., Leng W.H., Chien C.C., et al. Enhancement of cell radiation sensitivity by pegylated gold nanoparticles. Phys Med Biol 2010, 55:931-945.
30. Lo T.N., Chen Y.T., Chiu C.W., Liu C.J., Wu S.R., Lin I.K., et al. E-beam lithography and electrodeposition fabrication of thick nanostructured devices. J Phys D: Appl Phys 2007, 40:3172-3176.
31. Lo T.N., Chen Y.T., Liu C.J., Chang W.D., Lai T.Y., Wu H.J., et al. Using e-beam and X-ray lithography techniques to fabricate zone plates for hard X-ray. Synchrotron Radiation Instrumentation 2007, 1466-1469. Pts 1 and 2. J.Y. Choi, S. Rah (Eds.).
32. Margaritondo G. Elements of synchrotron light: for biology, chemistry, and medical research 2002, Oxford University Press.
33. Marsh M.N., Peters T.J., Brown A.C. Observations of isolated enterocytes and of their subcellular components using transmission and scanning electron microscopy. Gut 1971, 12:499-508.
34. Marton L. The electron microscope: a new tool for bacteriological research. J Bacteriol 1941, 41:397-413.
35. McDermott G., Le Gros M.A., Knoechel C.G., Uchida M., Larabell C.A. Soft X-ray tomography and cryogenic light microscopy: the cool combination in cellular imaging. Trends Cell Biol 2009, 19:587-595.
36. Meyer-Ilse W., Hamamoto D., Nair A., Lelievre S.A., Denbeaux G., Johnson L., et al. High resolution protein localization using soft X-ray microscopy. J Microsc 2001, 201:395-403.
37. Paganin D., Nugent K.A. Noninterferometric phase imaging with partially coherent light. Phys Rev Lett 1998, 80:2586-2589.
38. Porter K.R., Claude A., Fullam E.F. A study of tissue culture cells by electron microscopy methods and preliminary observations. J Exp Med 1945, 81:233-246.
39. Rittweger E., Han K.Y., Irvine S.E., Eggeling C., Hell S.W. STED microscopy reveals crystal colour centres with nanometric resolution. Nat Photonics 2009, 3:144-147.
40. Shen Q., Lee W.K., Fezzaa K., Chu Y.S., De Carlo F., Jemian P., et al. Dedicated full-field X-ray imaging beamline at advanced photon source. Nucl Instrum Methods A 2007, 582:77-80.
41. Song Y.F., Chang C.H., Liu C.Y., Chang S.H., Jeng U., Lai Y.H., et al. Performance of X-ray beamlines at superconducting wavelength shifter. Synchrotron radiation instrumentation 2007, 808-811. Pts 1 and 2. J.Y. Choi, S. Rah (Eds.).
42. Tanaka K., Fukudome H. Three-dimensional organization of the Golgi complex observed by scanning electron microscopy. J Electron Microsc Tech 1991, 17:15-23.
43. Wang C.H., Chien C.C., Yu Y.L., Liu C.J., Lee C.F., Chen C.H., et al. Structural properties of 'naked' gold nanoparticles formed by synchrotron X-ray irradiation. J Synchrotron Radiat 2007, 14:477-482.
44. Wang C.H., Liu C.J., Wang C.L., Hua T.E., Obliosca J.M., Le K.H., et al. Optimizing the size and surface properties of polyethylene glycol (PEG)-gold nanoparticles by intense X-ray irradiation. J Phys D: Appl Phys 2008, 41.
45. Wang W., Li G., Chen C., Xie S., Zhuang X. Chromosome organization by a nucleoid-associated protein in live bacteria. Science 2011, 333:1445-1449.
46. Wang C.H., Liu C.J., Chien C.C., Chen H.T., Hua T.E., Leng W.H., et al. X-ray synthesized PEGylated (polyethylene glycol coated) gold nanoparticles in mice strongly accumulate in tumors. Mater Chem Phys 2011, 126:352-356.
47. Yeh H.I., Lu C.S., Wu Y.J., Chen C.C., Hong R.C., Ko Y.S., et al. Reduced expression of endothelial connexin37 and connexin40 in hyperlipidemic mice: recovery of connexin37 after 7-day simvastatin treatment. Arterioscler Thromb Vasc Biol 2003, 23:1391-1397.
48. Yi J., Chu Y.S., Chen Y.T., Chen T.Y., Hwu Y., Margaritondo G. High-resolution hard-X-ray microscopy using second-order zone-plate diffraction. J Phys D: Appl Phys 2011, 44.
49. Yin G.-C., Chen F.-R., Hwu Y., Shieh H.-P.D., Liang K.S. Quantitative phase retrieval in transmission hard X-ray microscope. Appl Phys Lett 2007, 90. 181118-181113.
50. Yun W., Lai B., Krasnoperova A.A., Di Fabrizio E., Cai Z., Cerrina F., et al. Development of zone plates with a blazed profile for hard X-ray applications. Rev Sci Instrum 1999, 70:3537-3541.