-
1
-
-
0034049454
-
Evolutionary rate and genetic drift of hepatitis C virus are not correlated with the host immune response, studies of infected donor-recipient clusters
-
Allain JP, Dong Y, Vandamme AM, Moulton V, Salemi M. 2000. Evolutionary rate and genetic drift of hepatitis C virus are not correlated with the host immune response: studies of infected donor-recipient clusters. J. Virol. 74:2541-2549.
-
(2000)
J. Virol.
, vol.74
, pp. 2541-2549
-
-
Allain, J.P.1
Dong, Y.2
Vandamme, A.M.3
Moulton, V.4
Salemi, M.5
-
2
-
-
2542478765
-
Hepatitis C virus quasi-species dynamics predict progression of fibrosis after liver transplantation
-
Arenas JI, et al. 2004. Hepatitis C virus quasi-species dynamics predict progression of fibrosis after liver transplantation. J. Infect. Dis. 189:2037-2046.
-
(2004)
J. Infect. Dis.
, vol.189
, pp. 2037-2046
-
-
Arenas, J.I.1
-
3
-
-
84865090452
-
-
Centers for Disease Control and Prevention. Centers for Disease Control and Prevention, Atlanta, GA
-
Centers for Disease Control and Prevention. 2010. Hepatitis C FAQs for the public. Centers for Disease Control and Prevention, Atlanta, GA. http://www.cdc.gov/hepatitis/C/cFAQ.htm.
-
(2010)
Hepatitis C FAQs for the public
-
-
-
4
-
-
38649110663
-
BEAST Bayesian evolutionary analysis by sampling trees
-
doi, 10.1186/1471-2148-7-214
-
Drummond AJ, Rambaut A. 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 7:214. doi:10.1186/1471-2148-7-214.
-
(2007)
BMC Evol. Biol.
, vol.7
, pp. 214
-
-
Drummond, A.J.1
Rambaut, A.2
-
5
-
-
17744381574
-
Bayesian coalescent inference of past population dynamics from molecular sequences
-
Drummond AJ, Rambaut A, Shapiro B, Pybus OG. 2005. Bayesian coalescent inference of past population dynamics from molecular sequences. Mol. Biol. Evol. 22:1185-1192.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1185-1192
-
-
Drummond, A.J.1
Rambaut, A.2
Shapiro, B.3
Pybus, O.G.4
-
6
-
-
1542410277
-
Frequent compartmentalization of hepatitis C virus variants in circulating B cells and monocytes
-
Ducoulombier D, et al. 2004. Frequent compartmentalization of hepatitis C virus variants in circulating B cells and monocytes. Hepatology 39: 817-825.
-
(2004)
Hepatology
, vol.39
, pp. 817-825
-
-
Ducoulombier, D.1
-
7
-
-
33646251107
-
Population genetic estimation of the loss of genetic diversity during horizontal transmission of HIV-1
-
doi, 10.1186/1471-2148-6-28
-
Edwards CT, et al. 2006. Population genetic estimation of the loss of genetic diversity during horizontal transmission of HIV-1. BMC Evol. Biol. 6:28. doi:10.1186/1471-2148-6-28.
-
(2006)
BMC Evol. Biol.
, vol.6
, pp. 28
-
-
Edwards, C.T.1
-
8
-
-
77956147218
-
Viral entry and escape from antibodymediated neutralization influence hepatitis C virus reinfection in liver transplantation
-
Fafi-Kremer S, et al. 2010. Viral entry and escape from antibodymediated neutralization influence hepatitis C virus reinfection in liver transplantation. J. Exp. Med. 207:2019-2031.
-
(2010)
J. Exp. Med.
, vol.207
, pp. 2019-2031
-
-
Fafi-Kremer, S.1
-
9
-
-
4544379897
-
Evolution of hepatitis C virus quasispecies immediately following liver transplantation
-
Feliu A, Gay E, Garcia-Retortillo M, Saiz JC, Forns X. 2004. Evolution of hepatitis C virus quasispecies immediately following liver transplantation. Liver Transpl. 10:1131-1139.
-
(2004)
Liver Transpl
, vol.10
, pp. 1131-1139
-
-
Feliu, A.1
Gay, E.2
Garcia-Retortillo, M.3
Saiz, J.C.4
Forns, X.5
-
10
-
-
84863115545
-
Hepatitis C virus infects the endothelial cells of the blood-brain barrier
-
e636
-
Fletcher NF, et al. 2012. Hepatitis C virus infects the endothelial cells of the blood-brain barrier. Gastroenterology 142:634-643.e636.
-
(2012)
Gastroenterology
, vol.142
, pp. 634-643
-
-
Fletcher, N.F.1
-
11
-
-
0036207348
-
The association between hepatitis C infection and survival after orthotopic liver transplantation
-
Forman LM, Lewis JD, Berlin JA, Feldman HI, Lucey MR. 2002. The association between hepatitis C infection and survival after orthotopic liver transplantation. Gastroenterology 122:889-896.
-
(2002)
Gastroenterology
, vol.122
, pp. 889-896
-
-
Forman, L.M.1
Lewis, J.D.2
Berlin, J.A.3
Feldman, H.I.4
Lucey, M.R.5
-
12
-
-
0030045971
-
A longitudinal analysis of hepatitis C virus replication following liver transplantation
-
Gane EJ, et al. 1996. A longitudinal analysis of hepatitis C virus replication following liver transplantation. Gastroenterology 110:167-177.
-
(1996)
Gastroenterology
, vol.110
, pp. 167-177
-
-
Gane, E.J.1
-
13
-
-
79955998952
-
The mode and tempo of hepatitis C virus evolution within and among hosts
-
doi, 10.1186/1471-2148-11-131
-
Gray RR, et al. 2011. The mode and tempo of hepatitis C virus evolution within and among hosts.BMCEvol. Biol. 11:131. doi:10.1186/1471-2148-11-131.
-
(2011)
BMCEvol. Biol.
, vol.11
, pp. 131
-
-
Gray, R.R.1
-
14
-
-
0029842879
-
Tracking hepatitis C virus quasispecies major and minor variants in symptomatic and asymptomatic liver transplant recipients
-
Gretch DR, et al. 1996. Tracking hepatitis C virus quasispecies major and minor variants in symptomatic and asymptomatic liver transplant recipients. J. Virol. 70:7622-7631.
-
(1996)
J. Virol.
, vol.70
, pp. 7622-7631
-
-
Gretch, D.R.1
-
16
-
-
1242307251
-
E2 quasispecies specificity of hepatitis C virus association with allografts immediately after liver transplantation
-
Hughes MG, Jr, et al. 2004. E2 quasispecies specificity of hepatitis C virus association with allografts immediately after liver transplantation. Liver Transpl. 10:208-216.
-
(2004)
Liver Transpl
, vol.10
, pp. 208-216
-
-
Hughes Jr., M.G.1
-
17
-
-
0027955678
-
Reduction of synonymous substitutions in the core protein gene of hepatitis C virus
-
Ina Y, Mizokami M, Ohba K, Gojobori T. 1994. Reduction of synonymous substitutions in the core protein gene of hepatitis C virus. J. Mol. Evol. 38:50-56.
-
(1994)
J. Mol. Evol.
, vol.38
, pp. 50-56
-
-
Ina, Y.1
Mizokami, M.2
Ohba, K.3
Gojobori, T.4
-
18
-
-
44949231397
-
Definition of a conserved immunodominant domain on hepatitis C virus E2 glycoprotein by neutralizing human monoclonal antibodies
-
Keck ZY, et al. 2008. Definition of a conserved immunodominant domain on hepatitis C virus E2 glycoprotein by neutralizing human monoclonal antibodies. J. Virol. 82:6061-6066.
-
(2008)
J. Virol.
, vol.82
, pp. 6061-6066
-
-
Keck, Z.Y.1
-
19
-
-
80054977124
-
Mapping a region of hepatitis C virus E2 that is responsible for escape from neutralizing antibodies and a core CD81-binding region that does not tolerate neutralization escape mutations
-
Keck ZY, et al. 2011. Mapping a region of hepatitis C virus E2 that is responsible for escape from neutralizing antibodies and a core CD81-binding region that does not tolerate neutralization escape mutations. J. Virol. 85:10451-10463.
-
(2011)
J. Virol.
, vol.85
, pp. 10451-10463
-
-
Keck, Z.Y.1
-
20
-
-
17744396121
-
Not so different after all, a comparison of methods for detecting amino acid sites under selection
-
Kosakovsky-Pond SL, Frost SD. 2005. Not so different after all: a comparison of methods for detecting amino acid sites under selection. Mol. Biol. Evol. 22:1208-1222.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1208-1222
-
-
Kosakovsky-Pond, S.L.1
Frost, S.D.2
-
21
-
-
58149388300
-
Naturally occurring dominant resistance mutations to hepatitis C virus protease and polymerase inhibitors in treatmentnaive patients
-
Kuntzen T, et al. 2008. Naturally occurring dominant resistance mutations to hepatitis C virus protease and polymerase inhibitors in treatmentnaive patients. Hepatology 48:1769-1778.
-
(2008)
Hepatology
, vol.48
, pp. 1769-1778
-
-
Kuntzen, T.1
-
22
-
-
0036776341
-
Detection and analysis of hepatitis C virus sequences in cerebrospinal fluid
-
Laskus T, et al. 2002. Detection and analysis of hepatitis C virus sequences in cerebrospinal fluid. J. Virol. 76:10064-10068.
-
(2002)
J. Virol.
, vol.76
, pp. 10064-10068
-
-
Laskus, T.1
-
23
-
-
2342488705
-
Human immunodeficiency virus facilitates infection/ replication of hepatitis C virus in native human macrophages
-
Laskus T, et al. 2004. Human immunodeficiency virus facilitates infection/ replication of hepatitis C virus in native human macrophages. Blood 103:3854-3859.
-
(2004)
Blood
, vol.103
, pp. 3854-3859
-
-
Laskus, T.1
-
24
-
-
0034089003
-
Hepatitis C virus in lymphoid cells of patients coinfected with human immunodeficiency virus type 1, evidence of active replication in monocytes/macrophages and lymphocytes
-
Laskus T, et al. 2000. Hepatitis C virus in lymphoid cells of patients coinfected with human immunodeficiency virus type 1: evidence of active replication in monocytes/macrophages and lymphocytes. J. Infect. Dis. 181:442-448.
-
(2000)
J. Infect. Dis.
, vol.181
, pp. 442-448
-
-
Laskus, T.1
-
25
-
-
0037083253
-
The origin of hepatitis C virus reinfecting transplanted livers, serum-derived versus peripheral blood mononuclear cell-derived virus
-
Laskus T, Radkowski M, Wilkinson J, Vargas H, Rakela J. 2002. The origin of hepatitis C virus reinfecting transplanted livers: serum-derived versus peripheral blood mononuclear cell-derived virus. J. Infect. Dis. 185:417-421.
-
(2002)
J. Infect. Dis.
, vol.185
, pp. 417-421
-
-
Laskus, T.1
Radkowski, M.2
Wilkinson, J.3
Vargas, H.4
Rakela, J.5
-
26
-
-
33745527481
-
Viral hepatitis and liver cancer, the case of hepatitis C
-
Levrero M. 2006. Viral hepatitis and liver cancer: the case of hepatitis C. Oncogene 25:3834-3847.
-
(2006)
Oncogene
, vol.25
, pp. 3834-3847
-
-
Levrero, M.1
-
27
-
-
77953028000
-
Genetic diversity of hepatitis C virus predicts recurrent disease after liver transplantation
-
Li H, et al. 2010. Genetic diversity of hepatitis C virus predicts recurrent disease after liver transplantation. Virology 402:248-255.
-
(2010)
Virology
, vol.402
, pp. 248-255
-
-
Li, H.1
-
28
-
-
34547842735
-
Evolution of the NS3 and NS5B regions of the hepatitis C virus during disease recurrence after liver transplantation
-
Massaguer A, et al. 2007. Evolution of the NS3 and NS5B regions of the hepatitis C virus during disease recurrence after liver transplantation. Am. J. Transplant. 7:2172-2179.
-
(2007)
Am. J. Transplant.
, vol.7
, pp. 2172-2179
-
-
Massaguer, A.1
-
29
-
-
65449152185
-
Telaprevir with peginterferon and ribavirin for chronic HCV genotype 1 infection
-
McHutchison JG, et al. 2009. Telaprevir with peginterferon and ribavirin for chronic HCV genotype 1 infection. N. Engl. J. Med. 360:1827-1838.
-
(2009)
N. Engl. J. Med.
, vol.360
, pp. 1827-1838
-
-
McHutchison, J.G.1
-
30
-
-
79953314182
-
HCV animal models, a journey of more than 30 years
-
Meuleman P, Leroux-Roels G. 2009. HCV animal models: a journey of more than 30 years. Viruses 1:222-240.
-
(2009)
Viruses
, vol.1
, pp. 222-240
-
-
Meuleman, P.1
Leroux-Roels, G.2
-
31
-
-
35349001696
-
Which evolutionary processes influence natural genetic variation for phenotypic traits?
-
Mitchell-Olds T, Willis JH, Goldstein DB. 2007. Which evolutionary processes influence natural genetic variation for phenotypic traits? Nat. Rev. Genet. 8:845-856.
-
(2007)
Nat. Rev. Genet.
, vol.8
, pp. 845-856
-
-
Mitchell-Olds, T.1
Willis, J.H.2
Goldstein, D.B.3
-
32
-
-
0042332252
-
Analysis of hepatitis C viral quasispecies in liver transplantation
-
Moreno-Garcia J, et al. 2003. Analysis of hepatitis C viral quasispecies in liver transplantation. Transplant Proc. 35:1838-1840.
-
(2003)
Transplant Proc
, vol.35
, pp. 1838-1840
-
-
Moreno-Garcia, J.1
-
33
-
-
17744395033
-
Datamonkey, rapid detection of selective pressure on individual sites of codon alignments
-
Pond S, Frost S. 2005. Datamonkey: rapid detection of selective pressure on individual sites of codon alignments. Bioinformatics 21:2531-2533.
-
(2005)
Bioinformatics
, vol.21
, pp. 2531-2533
-
-
Pond, S.1
Frost, S.2
-
34
-
-
33244464505
-
Kinetics of hepatitis C virus reinfection after liver transplantation
-
Powers KA, et al. 2006. Kinetics of hepatitis C virus reinfection after liver transplantation. Liver Transpl. 12:207-216.
-
(2006)
Liver Transpl
, vol.12
, pp. 207-216
-
-
Powers, K.A.1
-
35
-
-
0033911330
-
An integrated framework for the inference of viral population history from reconstructed genealogies
-
Pybus OG, Rambaut A, Harvey PH. 2000. An integrated framework for the inference of viral population history from reconstructed genealogies. Genetics 155:1429-1437.
-
(2000)
Genetics
, vol.155
, pp. 1429-1437
-
-
Pybus, O.G.1
Rambaut, A.2
Harvey, P.H.3
-
36
-
-
1642544601
-
Infection of primary human macrophages with hepatitis C virus in vitro, induction of tumour necrosis factor-alpha and interleukin 8
-
Radkowski M, et al. 2004. Infection of primary human macrophages with hepatitis C virus in vitro: induction of tumour necrosis factor-alpha and interleukin 8. J. Gen. Virol. 85:47-59.
-
(2004)
J. Gen. Virol.
, vol.85
, pp. 47-59
-
-
Radkowski, M.1
-
37
-
-
67649671594
-
Hepatitis C virus compartmentalization and infection recurrence after liver transplantation
-
Ramirez S, et al. 2009. Hepatitis C virus compartmentalization and infection recurrence after liver transplantation. Am. J. Transplant. 9:1591-1601.
-
(2009)
Am. J. Transplant.
, vol.9
, pp. 1591-1601
-
-
Ramirez, S.1
-
38
-
-
0032824180
-
Linkage disequilibrium test implies a large effective population number for HIV in vivo
-
Rouzine IM, Coffin JM. 1999. Linkage disequilibrium test implies a large effective population number for HIV in vivo. Proc. Natl. Acad. Sci. U. S. A. 96:10758-10763.
-
(1999)
Proc. Natl. Acad. Sci. U. S. A.
, vol.96
, pp. 10758-10763
-
-
Rouzine, I.M.1
Coffin, J.M.2
-
39
-
-
84862119350
-
A new evolutionary model for hepatitis C virus chronic infection
-
doi, 10.1371/journal.ppat.1002656
-
Gray RR, Salemi M, Klenerman P, Pybus OG. 2012. A new evolutionary model for hepatitis C virus chronic infection. PLoS Pathog. 8:e1002656. doi:10.1371/journal.ppat.1002656.
-
(2012)
PLoS Pathog
, vol.8
-
-
Gray, R.R.1
Salemi, M.2
Klenerman, P.3
Pybus, O.G.4
-
40
-
-
0036133193
-
Hepatitis C virus evolutionary patterns studied through analysis of full-genome sequences
-
Salemi M, Vandamme A. 2002. Hepatitis C virus evolutionary patterns studied through analysis of full-genome sequences. J. Mol. Evol. 54:62-70.
-
(2002)
J. Mol. Evol.
, vol.54
, pp. 62-70
-
-
Salemi, M.1
Vandamme, A.2
-
41
-
-
56649108118
-
Frequent compartmentalization of hepatitis C virus with leukocyte-related amino acids in the setting of liver transplantation
-
Schramm F, et al. 2008. Frequent compartmentalization of hepatitis C virus with leukocyte-related amino acids in the setting of liver transplantation. J. Infect. Dis. 198:1656-1666.
-
(2008)
J. Infect. Dis.
, vol.198
, pp. 1656-1666
-
-
Schramm, F.1
-
42
-
-
34547616165
-
Early evolution of hepatitis C virus (HCV) quasispecies after liver transplant for HCV-related disease
-
Schvoerer E, et al. 2007. Early evolution of hepatitis C virus (HCV) quasispecies after liver transplant for HCV-related disease. J. Infect. Dis. 196:528-536.
-
(2007)
J. Infect. Dis.
, vol.196
, pp. 528-536
-
-
Schvoerer, E.1
-
43
-
-
0032955193
-
T cell recognition of hypervariable region-1 from hepatitisCvirus envelope protein with multiple class IIMHCmolecules in mice and humans, preferential help for induction of antibodies to the hypervariable region
-
Shirai M, et al. 1999. T cell recognition of hypervariable region-1 from hepatitisCvirus envelope protein with multiple class IIMHCmolecules in mice and humans: preferential help for induction of antibodies to the hypervariable region. J. Immunol. 162:568-576.
-
(1999)
J. Immunol.
, vol.162
, pp. 568-576
-
-
Shirai, M.1
-
44
-
-
0024283666
-
Loss of information in genetic distances
-
Steel MA, Hendy MD, Penny D. 1988. Loss of information in genetic distances. Nature 336:118.
-
(1988)
Nature
, vol.336
, pp. 118
-
-
Steel, M.A.1
Hendy, M.D.2
Penny, D.3
-
45
-
-
0034983646
-
Bayesian selection of continuous-time Markov chain evolutionary models
-
Suchard MA, Weiss RE, Sincheimer JS. 2001. Bayesian selection of continuous-time Markov chain evolutionary models. Mol. Biol. Evol. 18: 1001-1013.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 1001-1013
-
-
Suchard, M.A.1
Weiss, R.E.2
Sincheimer, J.S.3
-
46
-
-
34547781750
-
MEGA4, molecular evolutionary genetics analysis (MEGA) software version 4.0
-
Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:1596-1599.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
47
-
-
51549111262
-
Hepatitis C, current options for nonresponders to peginterferon and ribavirin
-
Thomas E, Fried MW. 2008. Hepatitis C: current options for nonresponders to peginterferon and ribavirin. Curr. Gastroenterol. Rep. 10: 53-59.
-
(2008)
Curr. Gastroenterol. Rep.
, vol.10
, pp. 53-59
-
-
Thomas, E.1
Fried, M.W.2
-
48
-
-
0034992878
-
Identification of immunodominant hepatitis C virus (HCV)-specific cytotoxic T-cell epitopes by stimulation with endogenously synthesized HCV antigens
-
Urbani S, et al. 2001. Identification of immunodominant hepatitis C virus (HCV)-specific cytotoxic T-cell epitopes by stimulation with endogenously synthesized HCV antigens. Hepatology 33:1533-1543.
-
(2001)
Hepatology
, vol.33
, pp. 1533-1543
-
-
Urbani, S.1
-
49
-
-
34249946266
-
Progression of fibrosis during chronic hepatitis C is associated with rapid virus evolution
-
Wang X, et al. 2007. Progression of fibrosis during chronic hepatitis C is associated with rapid virus evolution. J. Virol. 81:6513-6522.
-
(2007)
J. Virol.
, vol.81
, pp. 6513-6522
-
-
Wang, X.1
-
50
-
-
84865081768
-
-
HCV, World Health Organization. World Health Organization, Geneva, Switzerland
-
World Health Organization. 2010. HCV: surveillance and control. World Health Organization, Geneva, Switzerland. http://www.who.int/csr /disease/hepatitis/whocdscsrlyo2003/en/index4.html.
-
(2010)
surveillance and control
-
-
|