메뉴 건너뛰기




Volumn 74, Issue 6, 2000, Pages 2541-2549

Evolutionary rate and genetic drift of hepatitis C virus are not correlated with the host immune response: Studies of infected donor-recipient clusters

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BLOOD DONOR; CLINICAL ARTICLE; CONTROLLED STUDY; GENETIC DRIFT; HEPATITIS C; HEPATITIS C VIRUS; HOST RESISTANCE; HUMAN; MOLECULAR EVOLUTION; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; STRAIN DIFFERENCE;

EID: 0034049454     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.74.6.2541-2549.2000     Document Type: Article
Times cited : (49)

References (49)
  • 1
    • 0026630482 scopus 로고
    • Genomic characterisation and mutation rate of hepatitis C virus isolated from a patient who contracted hepatitis during an epidemic on non-A, non-B hepatitis in Japan
    • Abe, K., G. Inchauspé, and K. Fujisawu. 1992. Genomic characterisation and mutation rate of hepatitis C virus isolated from a patient who contracted hepatitis during an epidemic on non-A, non-B hepatitis in Japan. J. Gen. Virol. 72:2725-2729.
    • (1992) J. Gen. Virol. , vol.72 , pp. 2725-2729
    • Abe, K.1    Inchauspé, G.2    Fujisawu, K.3
  • 2
    • 0029829717 scopus 로고    scopus 로고
    • Sequence analysis of hypervariable region of hepatitis C virus (HCV) associated with immune complex in patients with chronic HCV infection
    • Aiyama, T., K. Yoshioka, A. Okumura, M. Takayanagi, K. Iwata, T. Ishikawa, and S. Kakuma. 1996. Sequence analysis of hypervariable region of hepatitis C virus (HCV) associated with immune complex in patients with chronic HCV infection. J. Infect. Dis. 174:1316-1320.
    • (1996) J. Infect. Dis. , vol.174 , pp. 1316-1320
    • Aiyama, T.1    Yoshioka, K.2    Okumura, A.3    Takayanagi, M.4    Iwata, K.5    Ishikawa, T.6    Kakuma, S.7
  • 3
    • 0032781708 scopus 로고    scopus 로고
    • Hypervariable region diversity of hepatitis C virus and humoral response: Comparison between patients with and without cirrhosis
    • Allain, J.-P., W. Zhai, D. Shang, E. Timmers, and G. J. M. Alexander. 1999. Hypervariable region diversity of hepatitis C virus and humoral response: comparison between patients with and without cirrhosis. J. Med. Virol. 59:25-31.
    • (1999) J. Med. Virol. , vol.59 , pp. 25-31
    • Allain, J.-P.1    Zhai, W.2    Shang, D.3    Timmers, E.4    Alexander, G.J.M.5
  • 4
    • 0033033612 scopus 로고    scopus 로고
    • Variation of hepatitis C virus following serial transmission: Multiple mechanisms of diversification of the hypervariable region and evidence for convergent genome evolution
    • Casino, C., J. McAllister, F. Davidson, J. Power, E. Lawlord, P. L. Yap, P. Simmonds, and D. B. Smith. 1999. Variation of hepatitis C virus following serial transmission: multiple mechanisms of diversification of the hypervariable region and evidence for convergent genome evolution. J. Gen. Virol. 80:717-725.
    • (1999) J. Gen. Virol. , vol.80 , pp. 717-725
    • Casino, C.1    McAllister, J.2    Davidson, F.3    Power, J.4    Lawlord, E.5    Yap, P.L.6    Simmonds, P.7    Smith, D.B.8
  • 6
    • 0027453558 scopus 로고
    • Split decomposition: A technique to analyse viral evolution
    • Dopazo, J., A. Dress, and A. von Haeseler. 1993. Split decomposition: a technique to analyse viral evolution. Proc. Natl. Acad. Sci. USA 90:10320-10324.
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 10320-10324
    • Dopazo, J.1    Dress, A.2    Von Haeseler, A.3
  • 9
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 10
    • 0000122573 scopus 로고
    • Phylogeny inference package (version 3.2)
    • Felsenstein, J. P. 1989. Phylogeny inference package (version 3.2). Cladistics 5:164-166.
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.P.1
  • 11
    • 0022376704 scopus 로고
    • Dating the human-ape splitting by a molecular clock of mitochondrial DNA
    • Hasegawa, M., H. Kishino, and T. Yano. 1985. Dating the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22:160-174.
    • (1985) J. Mol. Evol. , vol.22 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 12
    • 0026605537 scopus 로고
    • CLUSTAL V: Improved software for multiple sequence alignment
    • Higgins, D. G., A. J. Bleasby, and R. Fuchs. 1992. CLUSTAL V: improved software for multiple sequence alignment. CABIOS 8:189-191.
    • (1992) CABIOS , vol.8 , pp. 189-191
    • Higgins, D.G.1    Bleasby, A.J.2    Fuchs, R.3
  • 13
    • 0024234855 scopus 로고
    • Clustal: A package for performing multiple sequence alignments on a microcomputer
    • Higgins, D. G., and P. M. Sharp. 1988. Clustal: a package for performing multiple sequence alignments on a microcomputer. Gene 73:237-244.
    • (1988) Gene , vol.73 , pp. 237-244
    • Higgins, D.G.1    Sharp, P.M.2
  • 14
    • 0030902563 scopus 로고    scopus 로고
    • Phylogenetic methods come of age: Testing hypotheses in an evolutionary context
    • Huelsenbeck, J., and B. Rannala. 1997. Phylogenetic methods come of age: testing hypotheses in an evolutionary context. Science 276:227-232.
    • (1997) Science , vol.276 , pp. 227-232
    • Huelsenbeck, J.1    Rannala, B.2
  • 16
    • 0031035817 scopus 로고    scopus 로고
    • Reactivity of synthetic peptides representing selected sections of hepatitis C virus core and envelope proteins with a panel of hepatitis C virus-seropositive human plasma
    • Jackson, P., J. Petrik, G. J. M. Alexander, J. Pearson, and J.-P. Allain. 1997. Reactivity of synthetic peptides representing selected sections of hepatitis C virus core and envelope proteins with a panel of hepatitis C virus-seropositive human plasma. J. Med. Virol. 51:67-79.
    • (1997) J. Med. Virol. , vol.51 , pp. 67-79
    • Jackson, P.1    Petrik, J.2    Alexander, G.J.M.3    Pearson, J.4    Allain, J.-P.5
  • 17
    • 0027223705 scopus 로고
    • Humoral immune response to hypervariable region 1 of the putative envelope glycoprotein (gp70) of hepatitis C virus
    • Kato, N., H. Sekiya, Y. Ootsuyama, T. Nakazawa, M. Hijikata, S. Ohkushi, and K. Shimotohno. 1993. Humoral immune response to hypervariable region 1 of the putative envelope glycoprotein (gp70) of hepatitis C virus. J. Virol. 67:3923-3930.
    • (1993) J. Virol. , vol.67 , pp. 3923-3930
    • Kato, N.1    Sekiya, H.2    Ootsuyama, Y.3    Nakazawa, T.4    Hijikata, M.5    Ohkushi, S.6    Shimotohno, K.7
  • 18
    • 0028001698 scopus 로고
    • Influence of antibodies to the hypervariable region of E2/NS1 glycoprotein on the selective replication of hepatitis C virus in chimpanzees
    • Kojima, M., T. Osuga, F. Tsuda, T. Tanaka, and H. Okamoto. 1994. Influence of antibodies to the hypervariable region of E2/NS1 glycoprotein on the selective replication of hepatitis C virus in chimpanzees. Virology 200:665-672.
    • (1994) Virology , vol.200 , pp. 665-672
    • Kojima, M.1    Osuga, T.2    Tsuda, F.3    Tanaka, T.4    Okamoto, H.5
  • 19
    • 0028354145 scopus 로고
    • Hypervariable region of hepatitis C virus envelope glycoprotein (E2/NS1) in an agammaglobulinemic patient
    • Kumar, U., J. Monjardino, and H. C. Thomas. 1994. Hypervariable region of hepatitis C virus envelope glycoprotein (E2/NS1) in an agammaglobulinemic patient. Gastroenterology 106:1072-1075.
    • (1994) Gastroenterology , vol.106 , pp. 1072-1075
    • Kumar, U.1    Monjardino, J.2    Thomas, H.C.3
  • 20
    • 0031550535 scopus 로고    scopus 로고
    • Hepatitis C virus genomic variability in untreated and immunosuppressed patients
    • Lawal, Z., J. Petrik, V. S. Wong, G. J. M. Alexander, and J.-P. Allain. 1997. Hepatitis C virus genomic variability in untreated and immunosuppressed patients. Virology 228:107-111.
    • (1997) Virology , vol.228 , pp. 107-111
    • Lawal, Z.1    Petrik, J.2    Wong, V.S.3    Alexander, G.J.M.4    Allain, J.-P.5
  • 21
    • 0028902775 scopus 로고
    • Molecular epidemiology of hepatitis C virus infection amongst intravenous drug users in rural communities
    • Majid, A., R. Holmes, U. Desselberger, P. Simmonds, and T. A. McKee. 1995. Molecular epidemiology of hepatitis C virus infection amongst intravenous drug users in rural communities. J. Med. Virol. 46:48-51.
    • (1995) J. Med. Virol. , vol.46 , pp. 48-51
    • Majid, A.1    Holmes, R.2    Desselberger, U.3    Simmonds, P.4    McKee, T.A.5
  • 22
    • 0033008053 scopus 로고    scopus 로고
    • Ontogeny of hepatitis C virus (HCV) hypervariable region 1 (HVR1) heterogeneity and HVR1 antibody responses over a three year period in a patient infected with HCV type 2b
    • Majid, A., P. Jackson, Z. Lawal, G. M. J. Pearson, H. Parker, G. J. M. Alexander, J.-P. Allain, and J. Petrik. 1999. Ontogeny of hepatitis C virus (HCV) hypervariable region 1 (HVR1) heterogeneity and HVR1 antibody responses over a three year period in a patient infected with HCV type 2b. J. Gen. Virol., 80:317-325.
    • (1999) J. Gen. Virol. , vol.80 , pp. 317-325
    • Majid, A.1    Jackson, P.2    Lawal, Z.3    Pearson, G.M.J.4    Parker, H.5    Alexander, G.J.M.6    Allain, J.-P.7    Petrik, J.8
  • 23
    • 0026538287 scopus 로고
    • Hepatitis C virus (HCV) circulates as a population of different but closely related genomes: Quasispecies nature of HCV genome distribution
    • Martell, A. R., J. I. Esteban, J. Quer, J. Genesca, A. Weiner, R. Esteban, J. Guardia, and J. Gomez. 1992. Hepatitis C virus (HCV) circulates as a population of different but closely related genomes: quasispecies nature of HCV genome distribution. J. Virol. 66:3225-3229.
    • (1992) J. Virol. , vol.66 , pp. 3225-3229
    • Martell, A.R.1    Esteban, J.I.2    Quer, J.3    Genesca, J.4    Weiner, A.5    Esteban, R.6    Guardia, J.7    Gomez, J.8
  • 24
    • 0031901336 scopus 로고    scopus 로고
    • Long-term evolution of the hypervariable region of hepatitis C virus in a common-source-infected cohort
    • McAllister, J., C. Casino, F. Davidson, J. Power, E. Lawlor, P. L. Yap, P. Simmonds, and D. B. Smith. 1998. Long-term evolution of the hypervariable region of hepatitis C virus in a common-source-infected cohort. J. Virol. 72:4893-4905.
    • (1998) J. Virol. , vol.72 , pp. 4893-4905
    • McAllister, J.1    Casino, C.2    Davidson, F.3    Power, J.4    Lawlor, E.5    Yap, P.L.6    Simmonds, P.7    Smith, D.B.8
  • 25
    • 0027509074 scopus 로고
    • Detection of three types of hepatitis C virus in blood donors: Investigation of type-specific differences in serologic reactivity and rate of alanine aminotransferase abnormalities
    • McOmish, F., S. W. Chan, B. C. Dow, J. Gillon, W. D. Frame, R. J. Crawford, P. L. Yap, E. A. C. Follett, and P. Simmonds. 1993. Detection of three types of hepatitis C virus in blood donors: investigation of type-specific differences in serologic reactivity and rate of alanine aminotransferase abnormalities. Transfusion 33:7-13.
    • (1993) Transfusion , vol.33 , pp. 7-13
    • McOmish, F.1    Chan, S.W.2    Dow, B.C.3    Gillon, J.4    Frame, W.D.5    Crawford, R.J.6    Yap, P.L.7    Follett, E.A.C.8    Simmonds, P.9
  • 27
    • 0022507362 scopus 로고
    • Simple method for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
    • Nei, M., and T. Gojobori. 1986. Simple method for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 3:418-426.
    • (1986) Mol. Biol. Evol. , vol.3 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 28
    • 84984583365 scopus 로고    scopus 로고
    • Evolution of hepatitis C virus quasispecies in mothers and infants infected through mother-to-infant transmission
    • Ni, Y. H., M. H. Cbang, P. J. Chen, H. H. Lin, and H. Y. Hsu. 1997. Evolution of hepatitis C virus quasispecies in mothers and infants infected through mother-to-infant transmission. J. Hepatol. 26:967-974.
    • (1997) J. Hepatol. , vol.26 , pp. 967-974
    • Ni, Y.H.1    Cbang, M.H.2    Chen, P.J.3    Lin, H.H.4    Hsu, H.Y.5
  • 29
    • 0030893672 scopus 로고    scopus 로고
    • Variation of hepatitis C virus hypervariable region 1 in immunocompromised patients
    • Odeberg, J., Z. Yun, A. Sonneborg, K. Bjoro, M. Ulhen, and J. Lundenberg. Variation of hepatitis C virus hypervariable region 1 in immunocompromised patients. J. Infect. Dis. 175:938-943.
    • J. Infect. Dis. , vol.175 , pp. 938-943
    • Odeberg, J.1    Yun, Z.2    Sonneborg, A.3    Bjoro, K.4    Ulhen, M.5    Lundenberg, J.6
  • 30
    • 0027959912 scopus 로고
    • Superinfection of chimpanzees carrying hepatitis C virus of genotype II/1b with that of genotype III/2a or I/1a
    • Okamoto, H., S. Mishiro, H. Tokita, F. Tsuda, Y. Miyakawa, and M. Mayumi. 1994. Superinfection of chimpanzees carrying hepatitis C virus of genotype II/1b with that of genotype III/2a or I/1a. Hepatology 20:1131-1134.
    • (1994) Hepatology , vol.20 , pp. 1131-1134
    • Okamoto, H.1    Mishiro, S.2    Tokita, H.3    Tsuda, F.4    Miyakawa, Y.5    Mayumi, M.6
  • 31
    • 0030937572 scopus 로고    scopus 로고
    • High throughput PCR detection of HCV based on semiautomated multisample RNA capture
    • Petrik, J., G. J. M. Pearson, and J.-P. Allain. 1997. High throughput PCR detection of HCV based on semiautomated multisample RNA capture. J. Virol. Methods 64:147-159.
    • (1997) J. Virol. Methods , vol.64 , pp. 147-159
    • Petrik, J.1    Pearson, G.J.M.2    Allain, J.-P.3
  • 32
    • 0030980281 scopus 로고    scopus 로고
    • Genetic drift can dominate short-term human immunodeficiency virus type 1 nef quasispecies evolution in vivo
    • Plikat, U., K. Nieselt-Struwe, and A. Meyerhans. 1997. Genetic drift can dominate short-term human immunodeficiency virus type 1 nef quasispecies evolution in vivo. J. Virol. 71:4233-4240.
    • (1997) J. Virol. , vol.71 , pp. 4233-4240
    • Plikat, U.1    Nieselt-Struwe, K.2    Meyerhans, A.3
  • 33
    • 0032976214 scopus 로고    scopus 로고
    • Acute hepatitis C virus structural gene sequences as predictors of persistent viremia: Hypervariable region 1 as a decoy
    • Ray, C. S., Y.-M. Wang, O. Laeyendecker, J. R. Ticehurst, S. A. Villano, and D. L. Thomas. 1999. Acute hepatitis C virus structural gene sequences as predictors of persistent viremia: hypervariable region 1 as a decoy. J. Virol. 73:2398-2346.
    • (1999) J. Virol. , vol.73 , pp. 2398-12346
    • Ray, C.S.1    Wang, Y.-M.2    Laeyendecker, O.3    Ticehurst, J.R.4    Villano, S.A.5    Thomas, D.L.6
  • 35
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N., and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 36
    • 0028089128 scopus 로고
    • Sequential change of the hypervariable region of the hepatitis C virus genome in acute infection
    • Sakamoto, N., N. Enomoto, M. Kurosaki, F. Marumo, and C. Sato. 1993. Sequential change of the hypervariable region of the hepatitis C virus genome in acute infection. J. Med. Virol. 42:103-108.
    • (1993) J. Med. Virol. , vol.42 , pp. 103-108
    • Sakamoto, N.1    Enomoto, N.2    Kurosaki, M.3    Marumo, F.4    Sato, C.5
  • 37
    • 0029073169 scopus 로고
    • Occurrence of antibodies reactive with more than one variant of the putative envelope glycoprotein (gp70) hypervariable region I in viremic hepatitis C virus-infected patients
    • Scarcelli, E., A. Cerino, G. Esposito, E. Silini, M. U. Mondelli, and C. Traboni. 1995. Occurrence of antibodies reactive with more than one variant of the putative envelope glycoprotein (gp70) hypervariable region I in viremic hepatitis C virus-infected patients. J. Virol. 60:4407-4412.
    • (1995) J. Virol. , vol.60 , pp. 4407-4412
    • Scarcelli, E.1    Cerino, A.2    Esposito, G.3    Silini, E.4    Mondelli, M.U.5    Traboni, C.6
  • 38
    • 0028140138 scopus 로고
    • Neutralizing antibodies against hepatitis C virus and emergence of neutralization escape mutant viruses
    • Shimizu, V. K., M. Hijikata, A. Iwamoto, H. J. Alter, R. H. Purcell, and H. Yoshikura. 1994. Neutralizing antibodies against hepatitis C virus and emergence of neutralization escape mutant viruses. J. Virol. 68:1494-1500.
    • (1994) J. Virol. , vol.68 , pp. 1494-1500
    • Shimizu, V.K.1    Hijikata, M.2    Iwamoto, A.3    Alter, H.J.4    Purcell, R.H.5    Yoshikura, H.6
  • 39
    • 0030587469 scopus 로고    scopus 로고
    • A hyperimmune serum against a synthetic peptide corresponding to the hypervariable region 1 of hepatitis C virus can prevent viral infection in cell culture
    • Shimizu, Y. K., H. Igarashi, T. Kiyohara, T. Cabezon, P. Farci, R. H. Purcell, and H. Yoshikura. 1996. A hyperimmune serum against a synthetic peptide corresponding to the hypervariable region 1 of hepatitis C virus can prevent viral infection in cell culture. Virology 223:409-412.
    • (1996) Virology , vol.223 , pp. 409-412
    • Shimizu, Y.K.1    Igarashi, H.2    Kiyohara, T.3    Cabezon, T.4    Farci, P.5    Purcell, R.H.6    Yoshikura, H.7
  • 40
    • 0030625755 scopus 로고    scopus 로고
    • Investigation of the pattern of diversity of hepatitis C virus in relation to times of transmission
    • Simmonds, P., and D. B. Smith. 1997. Investigation of the pattern of diversity of hepatitis C virus in relation to times of transmission. J. Viral Hepat. 4:69-71.
    • (1997) J. Viral Hepat. , vol.4 , pp. 69-71
    • Simmonds, P.1    Smith, D.B.2
  • 41
    • 0030846785 scopus 로고    scopus 로고
    • Characteristics of nucleotide substitution in the hepatitis C virus genome: Constraints on sequence change in coding regions at both ends of the genome
    • Smith, D. B., and P. Simmonds. 1997. Characteristics of nucleotide substitution in the hepatitis C virus genome: constraints on sequence change in coding regions at both ends of the genome. J. Mol. Evol. 45:238-246.
    • (1997) J. Mol. Evol. , vol.45 , pp. 238-246
    • Smith, D.B.1    Simmonds, P.2
  • 42
    • 0031002417 scopus 로고    scopus 로고
    • Likelihood mapping: A simple method to visualize phylogenetic content of a sequence alignment
    • Strimmer, K., and A. von Haeseler. 1997. Likelihood mapping: a simple method to visualize phylogenetic content of a sequence alignment. Proc. Natl. Acad. Sci. USA 94:6815-6819.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 6815-6819
    • Strimmer, K.1    Von Haeseler, A.2
  • 43
    • 0028870181 scopus 로고
    • Sequence evolution of the hypervariable region in the putative envelope region E2/NS1 of hepatitis C virus is correlated with specific humoral immune responses
    • van Doorn, L. J., I. Capriles, G. Maertens, R. Deleys, K. Murray, T. Kos, H. Schellekens, and W. Quint. 1995. Sequence evolution of the hypervariable region in the putative envelope region E2/NS1 of hepatitis C virus is correlated with specific humoral immune responses. J. Virol. 69:773-778.
    • (1995) J. Virol. , vol.69 , pp. 773-778
    • Van Doorn, L.J.1    Capriles, I.2    Maertens, G.3    Deleys, R.4    Murray, K.5    Kos, T.6    Schellekens, H.7    Quint, W.8
  • 47
    • 0031936597 scopus 로고    scopus 로고
    • Immunity in chimpanzees chronically infected with hepatitis C virus: Role of minor quasispecies in reinfection
    • Wyatt, C. A., L. Andrus, B. Brotman, F. Huang, D. H. Lee, and A. M. Prince. 1998. Immunity in chimpanzees chronically infected with hepatitis C virus: role of minor quasispecies in reinfection. J. Virol. 72:1725-1730.
    • (1998) J. Virol. , vol.72 , pp. 1725-1730
    • Wyatt, C.A.1    Andrus, L.2    Brotman, B.3    Huang, F.4    Lee, D.H.5    Prince, A.M.6
  • 48
    • 0029037291 scopus 로고
    • Antibodies in human sera specific to hypervariable region 1 of hepatitis C virus can block viral attachment
    • Zibert, A., E. Schreier, and M. Roggendorf. 1995. Antibodies in human sera specific to hypervariable region 1 of hepatitis C virus can block viral attachment. Virology 208:653-661.
    • (1995) Virology , vol.208 , pp. 653-661
    • Zibert, A.1    Schreier, E.2    Roggendorf, M.3
  • 49
    • 0030893694 scopus 로고    scopus 로고
    • Epitope mapping of antibodies directed against hypervariable region 1 in acute self-limiting and chronic infections due to hepatitis C virus
    • Zibert, A., W. Kraas, H. Meisel, G. Jung, and M. Roggendorf. 1997. Epitope mapping of antibodies directed against hypervariable region 1 in acute self-limiting and chronic infections due to hepatitis C virus. J. Virol. 71:4123-4127.
    • (1997) J. Virol. , vol.71 , pp. 4123-4127
    • Zibert, A.1    Kraas, W.2    Meisel, H.3    Jung, G.4    Roggendorf, M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.