-
1
-
-
0026063965
-
Branching pattern in the evolutionary tree for human mitochondrial DNA
-
DI RIENZO, A., and A. C. WILSON, 1991 Branching pattern in the evolutionary tree for human mitochondrial DNA. Proc. Natl. Acad. Sci. USA 88: 1597-1601.
-
(1991)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 1597-1601
-
-
Di Rienzo, A.1
Wilson, A.C.2
-
2
-
-
0029559462
-
Coalescents and genealogical structure under neutrality
-
DONNELLY, P., and S. TAVARÉ, 1995 Coalescents and genealogical structure under neutrality. Annu. Rev. Genet. 29: 401-421.
-
(1995)
Annu. Rev. Genet.
, vol.29
, pp. 401-421
-
-
Donnelly, P.1
Tavaré, S.2
-
3
-
-
0004128472
-
-
Cambridge University Press, Cambridge, United Kingdom
-
EDWARDS, A. W. F., 1972 Likelihood. Cambridge University Press, Cambridge, United Kingdom.
-
(1972)
Likelihood
-
-
Edwards, A.W.F.1
-
4
-
-
0001708655
-
Evolutionary trees from gene frequencies and quantitative characters: Finding maximum likelihood estimates
-
FELSENSTEIN, J., 1981 Evolutionary trees from gene frequencies and quantitative characters: finding maximum likelihood estimates. Evolution 35: 1229-1242.
-
(1981)
Evolution
, vol.35
, pp. 1229-1242
-
-
Felsenstein, J.1
-
5
-
-
0026682501
-
Estimating effective population size from samples of sequences: Inefficiency of pairwise and segregating sites as compared to phylogenetic estimates
-
FELSENSTEIN, J., 1992 Estimating effective population size from samples of sequences: inefficiency of pairwise and segregating sites as compared to phylogenetic estimates. Genet. Res. 59: 139-117.
-
(1992)
Genet. Res.
, vol.59
, pp. 139-1117
-
-
Felsenstein, J.1
-
6
-
-
0027957337
-
A phylogenetic estimator of effective population size or mutation rate
-
FU, Y.-X., 1994 A phylogenetic estimator of effective population size or mutation rate. Genetics 136: 685-692.
-
(1994)
Genetics
, vol.136
, pp. 685-692
-
-
Fu, Y.-X.1
-
7
-
-
0032912338
-
Population dynamics of HIV-1 inferred from gene sequences
-
GRASSLY, N. C., P. H. HARVEY and E. C. HOLMES, 1999 Population dynamics of HIV-1 inferred from gene sequences. Genetics 151: 427-438.
-
(1999)
Genetics
, vol.151
, pp. 427-438
-
-
Grassly, N.C.1
Harvey, P.H.2
Holmes, E.C.3
-
8
-
-
0028782096
-
Sampling theory for neutral alleles in a varying environment
-
GRIFFITHS, R. C., and S. TAVARÉ, 1994 Sampling theory for neutral alleles in a varying environment. Philos. Trans. R. Soc. Lond. B 344: 403-410.
-
(1994)
Philos. Trans. R. Soc. Lond. B
, vol.344
, pp. 403-410
-
-
Griffiths, R.C.1
Tavaré, S.2
-
9
-
-
0022376704
-
Dating the human-ape splitting by a molecular clock of mitochondrial DNA
-
HASEGAWA, M., H. KISHINO and T. YANO, 1985 Dating the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22: 160-174.
-
(1985)
J. Mol. Evol.
, vol.22
, pp. 160-174
-
-
Hasegawa, M.1
Kishino, H.2
Yano, T.3
-
10
-
-
0002277392
-
The molecular population genetics of HIV-1
-
edited by K. A. CRANDALL. John Hopkins University Press, Baltimore
-
HOLMES, E. C., O. G. PYBUS and P. H. HARVEY, 1999 The molecular population genetics of HIV-1, pp. 177-207 in The Evolution of HIV, edited by K. A. CRANDALL. John Hopkins University Press, Baltimore.
-
(1999)
The Evolution of HIV
, pp. 177-207
-
-
Holmes, E.C.1
Pybus, O.G.2
Harvey, P.H.3
-
11
-
-
0001935493
-
Gene genealogies and the coalescent process
-
HUDSON, R. R., 1990 Gene genealogies and the coalescent process. Oxf. Surv. Evol. Biol. 7: 1-44.
-
(1990)
Oxf. Surv. Evol. Biol.
, vol.7
, pp. 1-44
-
-
Hudson, R.R.1
-
12
-
-
0028170791
-
Role of primary infection in epidemics of HIV infection in gay cohorts
-
JACQUEZ, J. A., J. S. KOOPMAN, C. P. SIMON and I. M. LONGINI, 1994 Role of primary infection in epidemics of HIV infection in gay cohorts. J. Acquired Immune Defic. Syndr. 7: 1169-1184.
-
(1994)
J. Acquired Immune Defic. Syndr.
, vol.7
, pp. 1169-1184
-
-
Jacquez, J.A.1
Koopman, J.S.2
Simon, C.P.3
Longini, I.M.4
-
13
-
-
0002556819
-
On the genealogy of large populations
-
KINGMAN, J. F. C., 1982 On the genealogy of large populations. J. Appl. Prob. 19A: 27-43.
-
(1982)
J. Appl. Prob.
, vol.19 A
, pp. 27-43
-
-
Kingman, J.F.C.1
-
14
-
-
0029027992
-
Estimating effective population size and mutation rate from sequence data using Metropolis-Hastings sampling
-
KUHNER, M. K., J. YAMATO and J. FELSENSTEIN, 1995 Estimating effective population size and mutation rate from sequence data using Metropolis-Hastings sampling. Genetics 140: 1421-1430.
-
(1995)
Genetics
, vol.140
, pp. 1421-1430
-
-
Kuhner, M.K.1
Yamato, J.2
Felsenstein, J.3
-
15
-
-
0031835126
-
Maximum likelihood estimation of population growth rates based on the coalescent
-
KUHNER, M. K., J. YAMATO and J. FELSENSTEIN, 1998 Maximum likelihood estimation of population growth rates based on the coalescent. Genetics 149: 429-434.
-
(1998)
Genetics
, vol.149
, pp. 429-434
-
-
Kuhner, M.K.1
Yamato, J.2
Felsenstein, J.3
-
16
-
-
0032844525
-
The molecular clock of HIV-1 unveiled through analysis of a known transmission history
-
LEITNER, T., and J. ALBERT, 1999 The molecular clock of HIV-1 unveiled through analysis of a known transmission history. Proc. Natl. Acad. Sci. USA 96: 10752-10757.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 10752-10757
-
-
Leitner, T.1
Albert, J.2
-
17
-
-
0031010764
-
Tempo and mode of nucleotide substitutions in gag and env gene fragments in human immunodeficiency virus type I populations with a known transmission history
-
LEITNER, T., S. KUMAR and J. ALBERT, 1997 Tempo and mode of nucleotide substitutions in gag and env gene fragments in human immunodeficiency virus type I populations with a known transmission history. J. Virol. 71: 4761-4770.
-
(1997)
J. Virol.
, vol.71
, pp. 4761-4770
-
-
Leitner, T.1
Kumar, S.2
Albert, J.3
-
18
-
-
0023740248
-
Rates and dates of divergence between AIDS virus nucleotide sequences
-
LI, W. H., M. TANIMURI and P. M. SHARP, 1988 Rates and dates of divergence between AIDS virus nucleotide sequences. Mol. Biol. Evol. 5: 313-330.
-
(1988)
Mol. Biol. Evol.
, vol.5
, pp. 313-330
-
-
Li, W.H.1
Tanimuri, M.2
Sharp, P.M.3
-
19
-
-
0029654016
-
Inferring population history from molecular phylogenies
-
NEE, S., E. C. HOLMES, A. RAMBAUT and P. H. HARVEY, 1995 Inferring population history from molecular phylogenies. Philos. Trans. R. Soc. Lond. 349: 25-31.
-
(1995)
Philos. Trans. R. Soc. Lond.
, vol.349
, pp. 25-31
-
-
Nee, S.1
Holmes, E.C.2
Rambaut, A.3
Harvey, P.H.4
-
20
-
-
0032510681
-
Application of a time-dependent coalescence process for inferring the history of population size changes from DNa sequence data
-
POLANSKI, A., M. KIMMEL and R. CHAKRABORTY, 1998 Application of a time-dependent coalescence process for inferring the history of population size changes from DNA sequence data. Proc. Natl. Acad. Sci. USA 95: 5456-5461.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 5456-5461
-
-
Polanski, A.1
Kimmel, M.2
Chakraborty, R.3
-
21
-
-
0032970208
-
The mid-depth method and HIV-1: A practical approach for testing hypotheses of viral epidemic history
-
PYBUS, O. G., E. C. HOLMES and P. H. HARVEY, 1999 The mid-depth method and HIV-1: a practical approach for testing hypotheses of viral epidemic history. Mol. Biol. Evol. 16: 953-959.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 953-959
-
-
Pybus, O.G.1
Holmes, E.C.2
Harvey, P.H.3
-
22
-
-
0030928378
-
Seq-Gen: An application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees
-
RAMBAUT, A., and N. C. GRASSLY, 1997 Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees. Comput. Appl. Biosci. 13: 235-238.
-
(1997)
Comput. Appl. Biosci.
, vol.13
, pp. 235-238
-
-
Rambaut, A.1
Grassly, N.C.2
-
23
-
-
15644383725
-
A molecular epidemiologic survey of HIV in Uganda
-
RAYFIELD, M. A., R. G. DOWNING, J. BAGGS, J. HU, D. PIENIAZEK et al., 1998 A molecular epidemiologic survey of HIV in Uganda. AIDS 12: 521-527.
-
(1998)
AIDS
, vol.12
, pp. 521-527
-
-
Rayfield, M.A.1
Downing, R.G.2
Baggs, J.3
Hu, J.4
Pieniazek, D.5
-
24
-
-
0032971117
-
Genetic analysis of human immunodeficiency virus type 1 strains in Kenya: A comparison using phylogenetic analysis and a combinatorial melting assay
-
ROBBINS, K. E., L. G. KOSTRIKIS, T. M. BROWN, O. ANZALA, S. SHIN et al., 1999 Genetic analysis of human immunodeficiency virus type 1 strains in Kenya: a comparison using phylogenetic analysis and a combinatorial melting assay. AIDS Res. Hum. Retro. 15: 329-335.
-
(1999)
AIDS Res. Hum. Retro.
, vol.15
, pp. 329-335
-
-
Robbins, K.E.1
Kostrikis, L.G.2
Brown, T.M.3
Anzala, O.4
Shin, S.5
-
25
-
-
0022642571
-
Epidemic of AIDS related virus (HTLV-III/ LAV) infection among intravenous drug abusers
-
ROBERTSON, J. R., A. B. BUCKNALL, P. D. WELSBY, J. J. ROBERTS, J. M. INGLIS et al., 1986 Epidemic of AIDS related virus (HTLV-III/ LAV) infection among intravenous drug abusers. Br. Med. J. 292: 527-529.
-
(1986)
Br. Med. J.
, vol.292
, pp. 527-529
-
-
Robertson, J.R.1
Bucknall, A.B.2
Welsby, P.D.3
Roberts, J.J.4
Inglis, J.M.5
-
26
-
-
0002667169
-
Coalescent approaches to HIV population genetics
-
edited by K. A. CRANDALL. John Hopkins University Press, Baltimore
-
RODRIGO, A. G., and J. FELSENSTEIN, 1999 Coalescent approaches to HIV population genetics, pp. 233-272 in The Evolution of HIV, edited by K. A. CRANDALL. John Hopkins University Press, Baltimore.
-
(1999)
The Evolution of HIV
, pp. 233-272
-
-
Rodrigo, A.G.1
Felsenstein, J.2
-
27
-
-
0025951996
-
Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations
-
SLATKIN, M., and R. R. HUDSON, 1991 Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. Genetics 129: 555-562.
-
(1991)
Genetics
, vol.129
, pp. 555-562
-
-
Slatkin, M.1
Hudson, R.R.2
-
29
-
-
0031309523
-
HIV/AIDS epidemics in sub-Saharan Africa: Dynamism, diversity and discrete declines
-
TARANTOLA, D., and B. SCHWARTLANDER, 1997 HIV/AIDS epidemics in sub-Saharan Africa: dynamism, diversity and discrete declines. AIDS 11: S5-S21.
-
(1997)
AIDS
, vol.11
-
-
Tarantola, D.1
Schwartlander, B.2
|