메뉴 건너뛰기




Volumn 21, Issue 6, 2011, Pages 821-829

Human population dispersal "Out of Africa" estimated from linkage disequilibrium and allele frequencies of SNPs

Author keywords

[No Author keywords available]

Indexed keywords

AFRICA; ARTICLE; CONTROLLED STUDY; ETHNIC GROUP; EVOLUTION; GENE FREQUENCY; GENE LINKAGE DISEQUILIBRIUM; GENE LOCUS; GENETIC ASSOCIATION; GENETIC VARIABILITY; GENOTYPE; HUMAN; POPULATION MODEL; PRIORITY JOURNAL; SAMPLE SIZE; SIMULATION; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 79957956814     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.119636.110     Document Type: Article
Times cited : (118)

References (56)
  • 1
    • 0036208832 scopus 로고    scopus 로고
    • Patterns of linkage disequilibrium in the human genome
    • DOI 10.1038/nrg777
    • Ardlie KG, Kruglyak L, Seielstad M. 2002. Patterns of linkage disequilibrium in the human genome. Nat Rev Genet 3: 299-309. (Pubitemid 34279798)
    • (2002) Nature Reviews Genetics , vol.3 , Issue.4 , pp. 299-309
    • Ardlie, K.G.1    Kruglyak, L.2    Seielstad, M.3
  • 2
    • 0037370384 scopus 로고    scopus 로고
    • The application of molecular genetic approaches to the study of human evolution
    • DOI 10.1038/ng1113
    • Cavalli-Sforza LL, Feldman MW. 2003. The application of molecular genetic approaches to the study of human evolution. Nat Genet (Suppl) 33: 266-275. (Pubitemid 36284715)
    • (2003) Nature Genetics , vol.33 , Issue.SUPPL. , pp. 266-275
    • Cavalli-Sforza, L.L.1    Feldman, M.W.2
  • 3
    • 60349093708 scopus 로고    scopus 로고
    • Fundamental concepts in genetics: Effective population size and patterns of molecular evolution and variation
    • Charlesworth B. 2009. Fundamental concepts in genetics: effective population size and patterns of molecular evolution and variation. Nat Rev Genet 10: 195-205.
    • (2009) Nat Rev Genet , vol.10 , pp. 195-205
    • Charlesworth, B.1
  • 4
    • 27544474337 scopus 로고    scopus 로고
    • Ascertainment bias in studies of human genome-wide polymorphism
    • DOI 10.1101/gr.4107905
    • Clark AG, Hubisz MJ, Bustamante CD, Williamson SH, Nielsen R. 2005. Ascertainment bias in studies of human genome-wide polymorphism. Genome Res 15: 1496-1502. (Pubitemid 41545003)
    • (2005) Genome Research , vol.15 , Issue.11 , pp. 1496-1502
    • Clark, A.G.1    Hubisz, M.J.2    Bustamante, C.D.3    Williamson, S.H.4    Nielsen, R.5
  • 5
    • 33750444621 scopus 로고    scopus 로고
    • A worldwide survey of haplotype variation and linkage disequilibrium in the human genome
    • DOI 10.1038/ng1911, PII NG1911
    • Conrad DF, Jakobsson M, Coop G, Wen X, Wall JD, Rosenberg NA, Pritchard JK. 2006. A worldwide survey of haplotype variation and linkage disequilibrium in the human genome. Nat Genet 38: 1251-1260. (Pubitemid 44646287)
    • (2006) Nature Genetics , vol.38 , Issue.11 , pp. 1251-1260
    • Conrad, D.F.1    Jakobsson, M.2    Coop, G.3    Wen, X.4    Wall, J.D.5    Rosenberg, N.A.6    Pritchard, J.K.7
  • 8
    • 52049096371 scopus 로고    scopus 로고
    • Linkage disequilibrium and persistence of phase in Holstein-Friesian, Jersey and Angus cattle
    • de Roos AP, Hayes BJ, Spelman RJ, Goddard ME. 2008. Linkage disequilibrium and persistence of phase in Holstein-Friesian, Jersey and Angus cattle. Genetics 179: 1503-1512.
    • (2008) Genetics , vol.179 , pp. 1503-1512
    • De Roos, A.P.1    Hayes, B.J.2    Spelman, R.J.3    Goddard, M.E.4
  • 9
    • 57649136554 scopus 로고    scopus 로고
    • Progress and challenges in genome-wide association studies in humans
    • Donnelly P. 2008. Progress and challenges in genome-wide association studies in humans. Nature 456: 728-731.
    • (2008) Nature , vol.456 , pp. 728-731
    • Donnelly, P.1
  • 11
    • 33846511083 scopus 로고    scopus 로고
    • Anthropology. The missing years for modern humans
    • Goebel T. 2007. Anthropology. The missing years for modern humans. Science 315: 194-196.
    • (2007) Science , vol.315 , pp. 194-196
    • Goebel, T.1
  • 12
    • 73449149044 scopus 로고    scopus 로고
    • Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data
    • doi: 10.1371/journal.pgen.1000695
    • Gutenkunst RN, Hernandez RD, Williamson SH, Bustamante CD. 2009. Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data. PLoS Genet 5: e1000695. doi: 10.1371/journal.pgen.1000695.
    • (2009) PLoS Genet , vol.5
    • Gutenkunst, R.N.1    Hernandez, R.D.2    Williamson, S.H.3    Bustamante, C.D.4
  • 14
    • 0242500969 scopus 로고    scopus 로고
    • Novel multilocus measure of linkage disequilibrium to estimate past effective population size
    • DOI 10.1101/gr.387103
    • Hayes BJ, Visscher PM, McPartlan HC, Goddard ME. 2003. Novel multilocus measure of linkage disequilibrium to estimate past effective population size. Genome Res 13: 635-643. (Pubitemid 36511922)
    • (2003) Genome Research , vol.13 , Issue.4 , pp. 635-643
    • Hayes, B.J.1    Visscher, P.M.2    McPartlan, H.C.3    Goddard, M.E.4
  • 15
    • 0016565853 scopus 로고
    • Linkage disequilibrium among multiple neutral alleles produced by mutation in finite population
    • Hill WG. 1975. Linkage disequilibrium among multiple neutral alleles produced by mutation in finite population. Theor Popul Biol 8: 117-126.
    • (1975) Theor Popul Biol , vol.8 , pp. 117-126
    • Hill, W.G.1
  • 16
    • 33646226097 scopus 로고
    • Linkage disequilibrium in finite populations
    • Hill WG, Robertson A. 1968. Linkage disequilibrium in finite populations. Theor Appl Genet 38: 226-231.
    • (1968) Theor Appl Genet , vol.38 , pp. 226-231
    • Hill, W.G.1    Robertson, A.2
  • 17
    • 67349176068 scopus 로고    scopus 로고
    • Genetics in geographically structured populations: Defining, estimating and interpreting F(ST)
    • Holsinger KE, Weir BS. 2009. Genetics in geographically structured populations: defining, estimating and interpreting F(ST). Nat Rev Genet 10: 639-650.
    • (2009) Nat Rev Genet , vol.10 , pp. 639-650
    • Holsinger, K.E.1    Weir, B.S.2
  • 18
    • 0036184745 scopus 로고    scopus 로고
    • Generating samples under a Wright-Fisher neutral model of genetic variation
    • Hudson RR. 2002. Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics 18: 337-338. (Pubitemid 34183119)
    • (2002) Bioinformatics , vol.18 , Issue.2 , pp. 337-338
    • Hudson, R.R.1
  • 19
    • 0034619822 scopus 로고    scopus 로고
    • Mitochondrial genome variation and the origin of modem humans
    • DOI 10.1038/35047064
    • Ingman M, Kaessmann H, Paabo S, Gyllensten U. 2000. Mitochondrial genome variation and the origin of modern humans. Nature 408: 708-713. (Pubitemid 32015984)
    • (2000) Nature , vol.408 , Issue.6813 , pp. 708-713
    • Ingman, M.1    Kaessmann, H.2    Paabo, S.3    Gyllensten, U.4
  • 20
    • 77956331627 scopus 로고    scopus 로고
    • Integrating common and rare genetic variation in diverse human populations
    • International HapMap 3 Consortium
    • International HapMap 3 Consortium. 2010. Integrating common and rare genetic variation in diverse human populations. Nature 467: 52-58.
    • (2010) Nature , vol.467 , pp. 52-58
  • 22
    • 34748819978 scopus 로고    scopus 로고
    • Measurement of the human allele frequency spectrum demonstrates greater genetic drift in East Asians than in Europeans
    • DOI 10.1038/ng2116, PII NG2116
    • Keinan A, Mullikin JC, Patterson N, Reich D. 2007. Measurement of the human allele frequency spectrum demonstrates greater genetic drift in East Asians than in Europeans. Nat Genet 39: 1251-1255. (Pubitemid 47482683)
    • (2007) Nature Genetics , vol.39 , Issue.10 , pp. 1251-1255
    • Keinan, A.1    Mullikin, J.C.2    Patterson, N.3    Reich, D.4
  • 24
    • 0032246507 scopus 로고    scopus 로고
    • Towards a theory of modern human origins: Geography, demography, and diversity in recent human evolution
    • 1998
    • Lahr MM, Foley RA. 1998. Towards a theory of modern human origins: Geography, demography, and diversity in recent human evolution. Am J Phys Anthropol Suppl 27 1998: 137-176.
    • (1998) Am J Phys Anthropol Suppl , vol.27 , pp. 137-176
    • Lahr, M.M.1    Foley, R.A.2
  • 29
    • 0036811711 scopus 로고    scopus 로고
    • A genealogical interpretation of linkage disequilibrium
    • McVean GA. 2002. A genealogical interpretation of linkage disequilibrium. Genetics 162: 987-991. (Pubitemid 35365058)
    • (2002) Genetics , vol.162 , Issue.2 , pp. 987-991
    • McVean, G.A.T.1
  • 30
    • 33747129693 scopus 로고    scopus 로고
    • Going east: New genetic and archaeological perspectives on the modern human colonization of Eurasia
    • DOI 10.1126/science.1128402
    • Mellars P. 2006a. Going east: New genetic and archaeological perspectives on the modern human colonization of Eurasia. Science 313: 796-800. (Pubitemid 44223340)
    • (2006) Science , vol.313 , Issue.5788 , pp. 796-800
    • Mellars, P.1
  • 31
    • 33644545086 scopus 로고    scopus 로고
    • A new radiocarbon revolution and the dispersal of modern humans in Eurasia
    • DOI 10.1038/nature04521, PII N04521
    • Mellars P. 2006b. A new radiocarbon revolution and the dispersal of modern humans in Eurasia. Nature 439: 931-935. (Pubitemid 43292405)
    • (2006) Nature , vol.439 , Issue.7079 , pp. 931-935
    • Mellars, P.1
  • 33
    • 70350069921 scopus 로고    scopus 로고
    • Spatial patterns of variation due to natural selection in humans
    • Novembre J, Di Rienzo A. 2009. Spatial patterns of variation due to natural selection in humans. Nat Rev Genet 10: 745-755.
    • (2009) Nat Rev Genet , vol.10 , pp. 745-755
    • Novembre, J.1    Di Rienzo, A.2
  • 34
    • 33846006923 scopus 로고    scopus 로고
    • Population structure and eigenanalysis
    • doi: 10.1371/journal.pgen.0020190
    • Patterson N, Price AL, Reich D. 2006. Population structure and eigenanalysis. PLoS Genet 2: e190. doi: 10.1371/journal.pgen.0020190.
    • (2006) PLoS Genet , vol.2
    • Patterson, N.1    Price, A.L.2    Reich, D.3
  • 38
    • 44349145935 scopus 로고    scopus 로고
    • Genetic evidence and the modern human origins debate
    • DOI 10.1038/hdy.2008.14, PII HDY200814
    • Relethford JH. 2008. Genetic evidence and the modern human origins debate. Heredity 100: 555-563. (Pubitemid 351733266)
    • (2008) Heredity , vol.100 , Issue.6 , pp. 555-563
    • Relethford, J.H.1
  • 39
    • 27544497650 scopus 로고    scopus 로고
    • Calibrating a coalescent simulation of human genome sequence variation
    • DOI 10.1101/gr.3709305
    • Schaffner SF, Foo C, Gabriel S, Reich D, Daly MJ, Altshuler D. 2005. Calibrating a coalescent simulation of human genome sequence variation. Genome Res 15: 1576-1583. (Pubitemid 41545011)
    • (2005) Genome Research , vol.15 , Issue.11 , pp. 1576-1583
    • Schaffner, S.F.1    Foo, C.2    Gabriel, S.3    Reich, D.4    Daly, M.J.5    Altshuler, D.6
  • 41
    • 0023818575 scopus 로고
    • Genetic and fossil evidence for the origin of modern humans
    • Stringer CB, Andrews P. 1988. Genetic and fossil evidence for the origin of modern humans. Science 239: 1263-1268.
    • (1988) Science , vol.239 , pp. 1263-1268
    • Stringer, C.B.1    Andrews, P.2
  • 42
    • 0015070635 scopus 로고
    • Linkage disequilibrium and homozygosity of chromosome segments in finite populations
    • Sved JA. 1971. Linkage disequilibrium and homozygosity of chromosome segments in finite populations. Theor Popul Biol 2: 125-141.
    • (1971) Theor Popul Biol , vol.2 , pp. 125-141
    • Sved, J.A.1
  • 43
    • 70349263972 scopus 로고    scopus 로고
    • Correlation measures for linkage disequilibrium within and between populations
    • Sved JA. 2009. Correlation measures for linkage disequilibrium within and between populations. Genet Res 91: 183-192.
    • (2009) Genet Res , vol.91 , pp. 183-192
    • Sved, J.A.1
  • 44
    • 57049168104 scopus 로고    scopus 로고
    • Divergence between human populations estimated from linkage disequilibrium
    • Sved JA, McRae AF, Visscher PM. 2008. Divergence between human populations estimated from linkage disequilibrium. Am J Hum Genet 83: 737-743.
    • (2008) Am J Hum Genet , vol.83 , pp. 737-743
    • Sved, J.A.1    McRae, A.F.2    Visscher, P.M.3
  • 45
    • 0027459098 scopus 로고
    • Allelic genealogy and human evolution
    • Takahata N. 1993. Allelic genealogy and human evolution. Mol Biol Evol 10: 2-22. (Pubitemid 23040222)
    • (1993) Molecular Biology and Evolution , vol.10 , Issue.1 , pp. 2-22
    • Takahata, N.1
  • 46
    • 70349496213 scopus 로고    scopus 로고
    • Human origins: Out of Africa
    • Tattersall I. 2009. Human origins: Out of Africa. Proc Natl Acad Sci 106: 16018-16021.
    • (2009) Proc Natl Acad Sci , vol.106 , pp. 16018-16021
    • Tattersall, I.1
  • 49
    • 0242524432 scopus 로고    scopus 로고
    • Patterns of Human Genetic Diversity: Implications for Human Evolutionary History and Disease
    • DOI 10.1146/annurev.genom.4.070802.110226
    • Tishkoff SA, Verrelli BC. 2003. Patterns of human genetic diversity: Implications for human evolutionary history and disease. Annu Rev Genomics Hum Genet 4: 293-340. (Pubitemid 37392927)
    • (2003) Annual Review of Genomics and Human Genetics , vol.4 , pp. 293-340
    • Tishkoff, S.A.1    Verrelli, B.C.2
  • 50
    • 43049180910 scopus 로고    scopus 로고
    • Use of Y chromosome and mitochondrial DNA population structure in tracing humanmigrations
    • Underhill PA, Kivisild T. 2007. Use of Y chromosome and mitochondrial DNA population structure in tracing humanmigrations. Annu Rev Genet 41: 539-564.
    • (2007) Annu Rev Genet , vol.41 , pp. 539-564
    • Underhill, P.A.1    Kivisild, T.2
  • 51
    • 0012145281 scopus 로고    scopus 로고
    • Population structure
    • Sinauer Associates, Sunderland, MA
    • Weir BS. 1996. Population structure. In Genetic data analysis II, pp. 161-200. Sinauer Associates, Sunderland, MA.
    • (1996) Genetic Data Analysis II , pp. 161-200
    • Weir, B.S.1
  • 52
    • 52949099491 scopus 로고    scopus 로고
    • Linkage disequilibrium and association mapping
    • Weir BS. 2008. Linkage disequilibrium and association mapping. Annu Rev Genomics Hum Genet 9: 129-142.
    • (2008) Annu Rev Genomics Hum Genet , vol.9 , pp. 129-142
    • Weir, B.S.1
  • 53
    • 0019166197 scopus 로고
    • Effect of mating structure on variation in linkage disequilibrium
    • Weir BS, Hill WG. 1980. Effect of mating structure on variation in linkage disequilibrium. Genetics 95: 477-488. (Pubitemid 11235212)
    • (1980) Genetics , vol.95 , Issue.2 , pp. 477-488
    • Weir, B.S.1    Hill, W.G.2
  • 54
    • 17844403270 scopus 로고    scopus 로고
    • 2 measure of linkage disequilibrium: Impact on design and interpretation of association studies
    • 2 measure of linkage disequilibrium: Impact on design and interpretation of association studies. Twin Res Hum Genet 8: 87-94.
    • (2005) Twin Res Hum Genet , vol.8 , pp. 87-94
    • Wray, N.R.1
  • 55
    • 1942517884 scopus 로고    scopus 로고
    • Nucleotide Diversity in Gorillas
    • DOI 10.1534/genetics.166.3.1375
    • Yu N, Jensen-Seaman MI, Chemnick L, Ryder O, Li WH. 2004. Nucleotide diversity in gorillas. Genetics 166: 1375-1383. (Pubitemid 38507056)
    • (2004) Genetics , vol.166 , Issue.3 , pp. 1375-1383
    • Yu, N.1    Jensen-Seaman, M.I.2    Chemnick, L.3    Ryder, O.4    Li, W.-H.5
  • 56
    • 0038744254 scopus 로고    scopus 로고
    • Features of evolution and expansion of modern humans, inferred from genomewide microsatellite markers
    • DOI 10.1086/375120
    • Zhivotovsky LA, Rosenberg NA, Feldman MW. 2003. Features of evolution and expansion of modern humans, inferred from genomewide microsatellite markers. Am J Hum Genet 72: 1171-1186. (Pubitemid 36530005)
    • (2003) American Journal of Human Genetics , vol.72 , Issue.5 , pp. 1171-1186
    • Zhivotovsky, L.A.1    Rosenberg, N.A.2    Feldman, M.W.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.