-
1
-
-
71149108056
-
Correlation of mRNA and protein in complex biological samples
-
Maier, T., Guell, M., and Serrano, L. (2009) Correlation of mRNA and protein in complex biological samples. FEBS Lett. 583, 3966-3973
-
(2009)
FEBS Lett.
, vol.583
, pp. 3966-3973
-
-
Maier, T.1
Guell, M.2
Serrano, L.3
-
2
-
-
72949089708
-
Global signatures of protein and mRNA expression levels
-
de Sousa Abreu, R., Penalva, L. O., Marcotte, E. M., and Vogel, C. (2009) Global signatures of protein and mRNA expression levels. Mol. Biosyst. 5, 1512-1526
-
(2009)
Mol. Biosyst.
, vol.5
, pp. 1512-1526
-
-
De Sousa Abreu, R.1
Penalva, L.O.2
Marcotte, E.M.3
Vogel, C.4
-
3
-
-
0035656688
-
Non-coding RNA genes and the modern RNA world
-
Eddy, S. R. (2001) Non-coding RNA genes and the modern RNA world. Nat. Rev. Genet. 2, 919-929
-
(2001)
Nat. Rev. Genet.
, vol.2
, pp. 919-929
-
-
Eddy, S.R.1
-
4
-
-
0037123632
-
An expanding universe of noncoding RNAs
-
Storz, G. (2002) An expanding universe of noncoding RNAs. Science 296, 1260-1263
-
(2002)
Science
, vol.296
, pp. 1260-1263
-
-
Storz, G.1
-
5
-
-
0026316101
-
The N-end rule in bacteria
-
Tobias, J. W., Shrader, T. E., Rocap, G., and Varshavsky, A. (1991) The N-end rule in bacteria. Science 254, 1374-1377
-
(1991)
Science
, vol.254
, pp. 1374-1377
-
-
Tobias, J.W.1
Shrader, T.E.2
Rocap, G.3
Varshavsky, A.4
-
6
-
-
0032079329
-
The ClpXP and ClpAP proteases degrade proteins with carboxy-terminal peptide tails added by the SsrA-tagging system
-
Gottesman, S., Roche, E., Zhou, Y., and Sauer, R. T. (1998) The ClpXP and ClpAP proteases degrade proteins with carboxy-terminal peptide tails added by the SsrA-tagging system. Genes Dev. 12, 1338-1347
-
(1998)
Genes Dev.
, vol.12
, pp. 1338-1347
-
-
Gottesman, S.1
Roche, E.2
Zhou, Y.3
Sauer, R.T.4
-
7
-
-
2642666491
-
Degradation of carboxy-terminal-tagged cytoplasmic proteins by the Escherichia coli protease HflB (FtsH)
-
Herman, C., Thevenet, D., Bouloc, P., Walker, G. C., and D'Ari, R. (1998) Degradation of carboxy-terminal-tagged cytoplasmic proteins by the Escherichia coli protease HflB (FtsH). Genes Dev. 12, 1348-1355
-
(1998)
Genes Dev.
, vol.12
, pp. 1348-1355
-
-
Herman, C.1
Thevenet, D.2
Bouloc, P.3
Walker, G.C.4
D'Ari, R.5
-
8
-
-
53149091681
-
Turnover of endogenous SsrA-tagged proteins mediated by ATP-dependent proteases in Escherichia coli
-
Lies, M., and Maurizi, M. R. (2008) Turnover of endogenous SsrA-tagged proteins mediated by ATP-dependent proteases in Escherichia coli. J. Biol. Chem. 283, 22918-22929
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 22918-22929
-
-
Lies, M.1
Maurizi, M.R.2
-
9
-
-
0001613991
-
The rate of interaction of the amino acids of the diet with the tissue proteins
-
Sprinson, D. B., and Rittenberg, D. (1949) The rate of interaction of the amino acids of the diet with the tissue proteins. J. Biol. Chem. 180, 715-726
-
(1949)
J. Biol. Chem.
, vol.180
, pp. 715-726
-
-
Sprinson, D.B.1
Rittenberg, D.2
-
10
-
-
0344329881
-
Dual channel imaging of two-dimensional electropherograms in Bacillus subtilis
-
Bernhardt, J., Buttner, K., Scharf, C., and Hecker, M. (1999) Dual channel imaging of two-dimensional electropherograms in Bacillus subtilis. Electrophoresis 20, 2225-2240
-
(1999)
Electrophoresis
, vol.20
, pp. 2225-2240
-
-
Bernhardt, J.1
Buttner, K.2
Scharf, C.3
Hecker, M.4
-
11
-
-
37549068524
-
Clp-dependent proteolysis down-regulates central metabolic pathways in glucose-starved Bacillus subtilis
-
Gerth, U., Kock, H., Kusters, I., Michalik, S., Switzer, R. L., and Hecker, M. (2008) Clp-dependent proteolysis down-regulates central metabolic pathways in glucose-starved Bacillus subtilis. J. Bacteriol. 190, 321-331
-
(2008)
J. Bacteriol.
, vol.190
, pp. 321-331
-
-
Gerth, U.1
Kock, H.2
Kusters, I.3
Michalik, S.4
Switzer, R.L.5
Hecker, M.6
-
12
-
-
0036692065
-
Dynamics of protein turnover, a missing dimension in proteomics
-
Pratt, J. M., Petty, J., Riba-Garcia, I., Robertson, D. H., Gaskell, S. J., Oliver, S. G., and Beynon, R. J. (2002) Dynamics of protein turnover, a missing dimension in proteomics. Mol. Cell. Proteomics 1, 579-591
-
(2002)
Mol. Cell. Proteomics
, vol.1
, pp. 579-591
-
-
Pratt, J.M.1
Petty, J.2
Riba-Garcia, I.3
Robertson, D.H.4
Gaskell, S.J.5
Oliver, S.G.6
Beynon, R.J.7
-
13
-
-
0036583926
-
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
-
Ong, S. E., Blagoev, B., Kratchmarova, I., Kristensen, D. B., Steen, H., Pandey, A., and Mann, M. (2002) Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol. Cell. Proteomics 1, 376-386
-
(2002)
Mol. Cell. Proteomics
, vol.1
, pp. 376-386
-
-
Ong, S.E.1
Blagoev, B.2
Kratchmarova, I.3
Kristensen, D.B.4
Steen, H.5
Pandey, A.6
Mann, M.7
-
14
-
-
60849097304
-
Turnover of the human proteome: Determination of protein intracellular stability by dynamic SILAC
-
Doherty, M. K., Hammond, D. E., Clague, M. J., Gaskell, S. J., and Beynon, R. J. (2009) Turnover of the human proteome: determination of protein intracellular stability by dynamic SILAC. J. Proteome Res. 8, 104-112
-
(2009)
J. Proteome Res.
, vol.8
, pp. 104-112
-
-
Doherty, M.K.1
Hammond, D.E.2
Clague, M.J.3
Gaskell, S.J.4
Beynon, R.J.5
-
15
-
-
77952021862
-
Multitagging proteomic strategy to estimate protein turnover rates in dynamic systems
-
Jayapal, K. P., Sui, S., Philp, R. J., Kok, Y. J., Yap, M. G., Griffin, T. J., and Hu, W. S. (2010) Multitagging proteomic strategy to estimate protein turnover rates in dynamic systems. J. Proteome Res. 9, 2087-2097
-
(2010)
J. Proteome Res.
, vol.9
, pp. 2087-2097
-
-
Jayapal, K.P.1
Sui, S.2
Philp, R.J.3
Kok, Y.J.4
Yap, M.G.5
Griffin, T.J.6
Hu, W.S.7
-
16
-
-
19944432197
-
Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
-
Ross, P. L., Huang, Y. N., Marchese, J. N., Williamson, B., Parker, K., Hattan, S., Khainovski, N., Pillai, S., Dey, S., Daniels, S., Purkayastha, S., Juhasz, P., Martin, S., Bartlet-Jones, M., He, F., Jacobson, A., and Pappin, D. J. (2004) Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Mol. Cell. Proteomics 3, 1154-1169
-
(2004)
Mol. Cell. Proteomics
, vol.3
, pp. 1154-1169
-
-
Ross, P.L.1
Huang, Y.N.2
Marchese, J.N.3
Williamson, B.4
Parker, K.5
Hattan, S.6
Khainovski, N.7
Pillai, S.8
Dey, S.9
Daniels, S.10
Purkayastha, S.11
Juhasz, P.12
Martin, S.13
Bartlet-Jones, M.14
He, F.15
Jacobson, A.16
Pappin, D.J.17
-
17
-
-
33646557331
-
Protein cleavage strategies for an improved analysis of the membrane proteome
-
Fischer, F., and Poetsch, A. (2006) Protein cleavage strategies for an improved analysis of the membrane proteome. Proteome Sci. 4, 2
-
(2006)
Proteome Sci.
, vol.4
, pp. 2
-
-
Fischer, F.1
Poetsch, A.2
-
18
-
-
0033535961
-
Accurate quantitation of protein expression and site-specific phosphorylation
-
Oda, Y., Huang, K., Cross, F. R., Cowburn, D., and Chait, B. T. (1999) Accurate quantitation of protein expression and site-specific phosphorylation. Proc. Natl. Acad. Sci. U. S. A. 96, 6591-6596
-
(1999)
Proc. Natl. Acad. Sci. U. S. A.
, vol.96
, pp. 6591-6596
-
-
Oda, Y.1
Huang, K.2
Cross, F.R.3
Cowburn, D.4
Chait, B.T.5
-
19
-
-
0347361590
-
Synthesis/degradation ratio mass spectrometry for measuring relative dynamic protein turnover
-
Cargile, B. J., Bundy, J. L., Grunden, A. M., and Stephenson, J. L., Jr. (2004) Synthesis/degradation ratio mass spectrometry for measuring relative dynamic protein turnover. Anal. Chem. 76, 86-97
-
(2004)
Anal. Chem.
, vol.76
, pp. 86-97
-
-
Cargile, B.J.1
Bundy, J.L.2
Grunden, A.M.3
Stephenson Jr., J.L.4
-
20
-
-
51949108078
-
Protein dynamics in iron-starved Mycobacterium tuberculosis revealed by turnover and abundance measurement using hybrid-linear ion trap-Fourier transform mass spectrometry
-
Rao, P. K., Rodriguez, G. M., Smith, I., and Li, Q. (2008) Protein dynamics in iron-starved Mycobacterium tuberculosis revealed by turnover and abundance measurement using hybrid-linear ion trap-Fourier transform mass spectrometry. Anal. Chem. 80, 6860-6869
-
(2008)
Anal. Chem.
, vol.80
, pp. 6860-6869
-
-
Rao, P.K.1
Rodriguez, G.M.2
Smith, I.3
Li, Q.4
-
21
-
-
76649083593
-
Quantitative proteomics by metabolic labeling of model organisms
-
Gouw, J. W., Krijgsveld, J., and Heck, A. J. (2010) Quantitative proteomics by metabolic labeling of model organisms. Mol. Cell. Proteomics 9, 11-24
-
(2010)
Mol. Cell. Proteomics
, vol.9
, pp. 11-24
-
-
Gouw, J.W.1
Krijgsveld, J.2
Heck, A.J.3
-
22
-
-
58249135359
-
QuantiSpec-Quantitative mass spectrometry data analysis of (15)N-metabolically labeled proteins
-
Haegler, K., Mueller, N. S., Maccarrone, G., Hunyadi-Gulyas, E., Webhofer, C., Filiou, M. D., Zhang, Y., and Turck, C. W. (2009) QuantiSpec-Quantitative mass spectrometry data analysis of (15)N-metabolically labeled proteins. J. Proteomics 71, 601-608
-
(2009)
J. Proteomics
, vol.71
, pp. 601-608
-
-
Haegler, K.1
Mueller, N.S.2
Maccarrone, G.3
Hunyadi-Gulyas, E.4
Webhofer, C.5
Filiou, M.D.6
Zhang, Y.7
Turck, C.W.8
-
23
-
-
79952137186
-
Proteome Scale Turnover Analysis in Live Animals Using Stable Isotope Metabolic Labeling
-
Zhang, Y., Reckow, S., Webhofer, C., Boehme, M., Gormanns, P., Egge- Jacobsen, W. M., and Turck, C. W. (2011) Proteome Scale Turnover Analysis in Live Animals Using Stable Isotope Metabolic Labeling. Anal. Chem. 83, 1665-1672
-
(2011)
Anal. Chem.
, vol.83
, pp. 1665-1672
-
-
Zhang, Y.1
Reckow, S.2
Webhofer, C.3
Boehme, M.4
Gormanns, P.5
Egge-Jacobsen, W.M.6
Turck, C.W.7
-
24
-
-
83055163797
-
A data processing pipeline for Mammalian proteome dynamics studies using stable isotope metabolic labeling
-
Guan, S., Price, J. C., Prusiner, S. B., Ghaemmaghami, S., and Burlingame, A. L. (2011) A data processing pipeline for Mammalian proteome dynamics studies using stable isotope metabolic labeling. Mol. Cell. Proteomics 10, M111 010728
-
(2011)
Mol. Cell. Proteomics
, vol.10
-
-
Guan, S.1
Price, J.C.2
Prusiner, S.B.3
Ghaemmaghami, S.4
Burlingame, A.L.5
-
25
-
-
77956271728
-
Analysis of proteome dynamics in the mouse brain
-
Price, J. C., Guan, S., Burlingame, A., Prusiner, S. B., and Ghaemmaghami, S. (2010) Analysis of proteome dynamics in the mouse brain. Proc. Natl. Acad. Sci. U. S. A. 107, 14508-14513
-
(2010)
Proc. Natl. Acad. Sci. U. S. A.
, vol.107
, pp. 14508-14513
-
-
Price, J.C.1
Guan, S.2
Burlingame, A.3
Prusiner, S.B.4
Ghaemmaghami, S.5
-
26
-
-
0007007650
-
Production of L-Threonine by Analog- Resistant Mutants
-
Kase, H., and Nakayama, K. (1972) Production of L-Threonine by Analog- Resistant Mutants. Ag. Biol. Chem. 36, 1611-1621
-
(1972)
Ag. Biol. Chem.
, vol.36
, pp. 1611-1621
-
-
Kase, H.1
Nakayama, K.2
-
27
-
-
25644459115
-
Role of the ssu and seu genes of Corynebacterium glutamicum ATCC 13032 in utilization of sulfonates and sulfonate esters as sulfur sources
-
Koch, D. J., Ruckert, C., Rey, D. A., Mix, A., Puhler, A., and Kalinowski, J. (2005) Role of the ssu and seu genes of Corynebacterium glutamicum ATCC 13032 in utilization of sulfonates and sulfonate esters as sulfur sources. Appl. Environ. Microbiol. 71, 6104-6114
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 6104-6114
-
-
Koch, D.J.1
Ruckert, C.2
Rey, D.A.3
Mix, A.4
Puhler, A.5
Kalinowski, J.6
-
28
-
-
68049101430
-
Physiological adaptation of Corynebacterium glutamicum to benzoate as alternative carbon source - A membrane proteome-centric view
-
Haussmann, U., Qi, S. W., Wolters, D., Rogner, M., Liu, S. J., and Poetsch, A. (2009) Physiological adaptation of Corynebacterium glutamicum to benzoate as alternative carbon source - a membrane proteome-centric view. Proteomics 9, 3635-3651
-
(2009)
Proteomics
, vol.9
, pp. 3635-3651
-
-
Haussmann, U.1
Qi, S.W.2
Wolters, D.3
Rogner, M.4
Liu, S.J.5
Poetsch, A.6
-
29
-
-
67349266694
-
Universal sample preparation method for proteome analysis
-
Wisniewski, J. R., Zougman, A., Nagaraj, N., and Mann, M. (2009) Universal sample preparation method for proteome analysis. Nat. Methods 6, 359-362
-
(2009)
Nat. Methods
, vol.6
, pp. 359-362
-
-
Wisniewski, J.R.1
Zougman, A.2
Nagaraj, N.3
Mann, M.4
-
30
-
-
12444259324
-
The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins
-
Kalinowski, J., Bathe, B., Bartels, D., Bischoff, N., Bott, M., Burkovski, A., Dusch, N., Eggeling, L., Eikmanns, B. J., Gaigalat, L., Goesmann, A., Hartmann, M., Huthmacher, K., Kramer, R., Linke, B., McHardy, A. C., Meyer, F., Mockel, B., Pfefferle, W., Puhler, A., Rey, D. A., Ruckert, C., Rupp, O., Sahm, H., Wendisch, V. F., Wiegrabe, I., and Tauch, A. (2003) The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins. J. Biotechnol. 104, 5-25
-
(2003)
J. Biotechnol.
, vol.104
, pp. 5-25
-
-
Kalinowski, J.1
Bathe, B.2
Bartels, D.3
Bischoff, N.4
Bott, M.5
Burkovski, A.6
Dusch, N.7
Eggeling, L.8
Eikmanns, B.J.9
Gaigalat, L.10
Goesmann, A.11
Hartmann, M.12
Huthmacher, K.13
Kramer, R.14
Linke, B.15
McHardy, A.C.16
Meyer, F.17
Mockel, B.18
Pfefferle, W.19
Puhler, A.20
Rey, D.A.21
Ruckert, C.22
Rupp, O.23
Sahm, H.24
Wendisch, V.F.25
Wiegrabe, I.26
Tauch, A.27
more..
-
31
-
-
0036393898
-
DTASelect and Contrast: Tools for assembling and comparing protein identifications from shotgun proteomics
-
Tabb, D. L., McDonald, W. H., and Yates, J. R., 3rd (2002) DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics. J. Proteome Res. 1, 21-26
-
(2002)
J. Proteome Res.
, vol.1
, pp. 21-26
-
-
Tabb, D.L.1
McDonald, W.H.2
Yates III, J.R.3
-
32
-
-
32544455331
-
Randomized sequence databases for tandem mass spectrometry peptide and protein identification
-
Higdon, R., Hogan, J. M., Van Belle, G., and Kolker, E. (2005) Randomized sequence databases for tandem mass spectrometry peptide and protein identification. OMICS 9, 364-379
-
(2005)
OMICS
, vol.9
, pp. 364-379
-
-
Higdon, R.1
Hogan, J.M.2
Van Belle, G.3
Kolker, E.4
-
33
-
-
75949113358
-
Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments
-
Albaum, S. P., Neuweger, H., Franzel, B., Lange, S., Mertens, D., Trotschel, C., Wolters, D., Kalinowski, J., Nattkemper, T. W., and Goesmann, A. (2009) Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments. Bioinformatics 25, 3128-3134
-
(2009)
Bioinformatics
, vol.25
, pp. 3128-3134
-
-
Albaum, S.P.1
Neuweger, H.2
Franzel, B.3
Lange, S.4
Mertens, D.5
Trotschel, C.6
Wolters, D.7
Kalinowski, J.8
Nattkemper, T.W.9
Goesmann, A.10
-
36
-
-
0000881748
-
Optimization and testing of mass spectral library search algorithms for compound identification
-
Stein, S. E., and Scott, D. R. (1994) Optimization and testing of mass spectral library search algorithms for compound identification. J. Am. Soc. Mass Spectrom. 5, 859-866
-
(1994)
J. Am. Soc. Mass Spectrom.
, vol.5
, pp. 859-866
-
-
Stein, S.E.1
Scott, D.R.2
-
37
-
-
0346122950
-
A correlation algorithm for the automated quantitative analysis of shotgun proteomics data
-
MacCoss, M. J., Wu, C. C., Liu, H., Sadygov, R., and Yates, J. R., 3rd (2003) A correlation algorithm for the automated quantitative analysis of shotgun proteomics data. Anal. Chem. 75, 6912-6921
-
(2003)
Anal. Chem.
, vol.75
, pp. 6912-6921
-
-
MacCoss, M.J.1
Wu, C.C.2
Liu, H.3
Sadygov, R.4
Yates III, J.R.5
-
38
-
-
0344737959
-
Automated statistical analysis of protein abundance ratios from data generated by stable-isotope dilution and tandem mass spectrometry
-
Li, X. J., Zhang, H., Ranish, J. A., and Aebersold, R. (2003) Automated statistical analysis of protein abundance ratios from data generated by stable-isotope dilution and tandem mass spectrometry. Anal. Chem. 75, 6648-6657
-
(2003)
Anal. Chem.
, vol.75
, pp. 6648-6657
-
-
Li, X.J.1
Zhang, H.2
Ranish, J.A.3
Aebersold, R.4
-
39
-
-
33749046638
-
Robust estimation of peptide abundance ratios and rigorous scoring of their variability and bias in quantitative shotgun proteomics
-
Pan, C., Kora, G., Tabb, D. L., Pelletier, D. A., McDonald, W. H., Hurst, G. B., Hettich, R. L., and Samatova, N. F. (2006) Robust estimation of peptide abundance ratios and rigorous scoring of their variability and bias in quantitative shotgun proteomics. Anal. Chem. 78, 7110-7120
-
(2006)
Anal. Chem.
, vol.78
, pp. 7110-7120
-
-
Pan, C.1
Kora, G.2
Tabb, D.L.3
Pelletier, D.A.4
McDonald, W.H.5
Hurst, G.B.6
Hettich, R.L.7
Samatova, N.F.8
-
40
-
-
60549117342
-
Comparison of public peak detection algorithms for MALDI mass spectrometry data analysis
-
Yang, C., He, Z., and Yu, W. (2009) Comparison of public peak detection algorithms for MALDI mass spectrometry data analysis. BMC Bioinformatics 10, 4
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 4
-
-
Yang, C.1
He, Z.2
Yu, W.3
-
41
-
-
33748659203
-
Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matching
-
Du, P., Kibbe, W. A., and Lin, S. M. (2006) Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matching. Bioinformatics 22, 2059-2065
-
(2006)
Bioinformatics
, vol.22
, pp. 2059-2065
-
-
Du, P.1
Kibbe, W.A.2
Lin, S.M.3
-
42
-
-
33746933405
-
How high G+C Gram-positive bacteria and in particular bifidobacteria cope with heat stress: Protein players and regulators
-
Ventura, M., Canchaya, C., Zhang, Z., Bernini, V., Fitzgerald, G. F., and van Sinderen, D. (2006) How high G+C Gram-positive bacteria and in particular bifidobacteria cope with heat stress: protein players and regulators. FEMS Microbiol. Rev. 30, 734-759
-
(2006)
FEMS Microbiol. Rev.
, vol.30
, pp. 734-759
-
-
Ventura, M.1
Canchaya, C.2
Zhang, Z.3
Bernini, V.4
Fitzgerald, G.F.5
Van Sinderen, D.6
-
43
-
-
79958164837
-
A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: An application study
-
Albaum, S. P., Hahne, H., Otto, A., Haussmann, U., Becher, D., Poetsch, A., Goesmann, A., and Nattkemper, T. W. (2011) A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study. Proteome Sci. 9, 30
-
(2011)
Proteome Sci.
, vol.9
, pp. 30
-
-
Albaum, S.P.1
Hahne, H.2
Otto, A.3
Haussmann, U.4
Becher, D.5
Poetsch, A.6
Goesmann, A.7
Nattkemper, T.W.8
-
44
-
-
0002294347
-
A simple sequentially rejective multiple test procedure
-
Holm, S. (1979) A simple sequentially rejective multiple test procedure. Scand. J. Statistics 6, 65-70
-
(1979)
Scand. J. Statistics
, vol.6
, pp. 65-70
-
-
Holm, S.1
-
45
-
-
0001329467
-
Distribution-free two-sample tests for scale
-
Fligner, M. A., and Killeen, T. J. (1976) Distribution-free two-sample tests for scale. J. Am. Statistical Assoc. 71, 210-213
-
(1976)
J. Am. Statistical Assoc.
, vol.71
, pp. 210-213
-
-
Fligner, M.A.1
Killeen, T.J.2
-
46
-
-
0000898845
-
An analysis of variance test for normality (Complete Samples)
-
Shapiro, S. S., and Wilk, M. B. (1965) An analysis of variance test for normality (Complete Samples). Biometrika 52, 591-611
-
(1965)
Biometrika
, vol.52
, pp. 591-611
-
-
Shapiro, S.S.1
Wilk, M.B.2
-
47
-
-
62249212116
-
Microarray studies reveal a 'differential response' to moderate or severe heat shock of the HrcA- And HspR-dependent systems in Corynebacterium glutamicum
-
Barreiro, C., Nakunst, D., Huser, A. T., de Paz, H. D., Kalinowski, J., and Martin, J. F. (2009) Microarray studies reveal a 'differential response' to moderate or severe heat shock of the HrcA- and HspR-dependent systems in Corynebacterium glutamicum. Microbiology 155, 359-372
-
(2009)
Microbiology
, vol.155
, pp. 359-372
-
-
Barreiro, C.1
Nakunst, D.2
Huser, A.T.3
De Paz, H.D.4
Kalinowski, J.5
Martin, J.F.6
-
48
-
-
0035024021
-
Validating clustering for gene expression data
-
Yeung, K. Y., Haynor, D. R., and Ruzzo, W. L. (2001) Validating clustering for gene expression data. Bioinformatics 17, 309-318
-
(2001)
Bioinformatics
, vol.17
, pp. 309-318
-
-
Yeung, K.Y.1
Haynor, D.R.2
Ruzzo, W.L.3
-
49
-
-
84944178665
-
Hierarchical grouping to optimize an objective function
-
Ward, J. H., Jr. (1963) Hierarchical grouping to optimize an objective function. J. Am. Statistical Assoc. 58, 236-244
-
(1963)
J. Am. Statistical Assoc.
, vol.58
, pp. 236-244
-
-
Ward Jr., J.H.1
-
50
-
-
0023905024
-
A criterion for determining the number of groups in a data set using sum-of-squares clustering
-
Krzanowski, W. J., and Lai, Y. T. (1988) A criterion for determining the number of groups in a data set using sum-of-squares clustering. Biometrics 44, 23-34
-
(1988)
Biometrics
, vol.44
, pp. 23-34
-
-
Krzanowski, W.J.1
Lai, Y.T.2
-
51
-
-
79951473933
-
Cell biology. The lives of proteins
-
Plotkin, J. B. (2011) Cell biology. The lives of proteins. Science 331, 683-684
-
(2011)
Science
, vol.331
, pp. 683-684
-
-
Plotkin, J.B.1
-
52
-
-
0026454716
-
Regulation by proteolysis: Energydependent proteases and their targets
-
Gottesman, S., and Maurizi, M. R. (1992) Regulation by proteolysis: energydependent proteases and their targets. Microbiol. Rev. 56, 592-621
-
(1992)
Microbiol. Rev.
, vol.56
, pp. 592-621
-
-
Gottesman, S.1
Maurizi, M.R.2
-
53
-
-
0033956060
-
The COG database: A tool for genome-scale analysis of protein functions and evolution
-
Tatusov, R. L., Galperin, M. Y., Natale, D. A., and Koonin, E. V. (2000) The COG database: a tool for genome-scale analysis of protein functions and evolution. Nucleic Acids Res. 28, 33-36
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 33-36
-
-
Tatusov, R.L.1
Galperin, M.Y.2
Natale, D.A.3
Koonin, E.V.4
-
54
-
-
41549117597
-
A quantitative analysis software tool for mass spectrometry-based proteomics
-
Park, S. K., Venable, J. D., Xu, T., and Yates, J. R., 3rd (2008) A quantitative analysis software tool for mass spectrometry-based proteomics. Nat. Methods 5, 319-322
-
(2008)
Nat. Methods
, vol.5
, pp. 319-322
-
-
Park, S.K.1
Venable, J.D.2
Xu, T.3
Yates III, J.R.4
-
55
-
-
33747197432
-
New algorithm for 15N/14N quantitation with LC-ESI-MS using an LTQ-FT mass spectrometer
-
Andreev, V. P., Li, L., Rejtar, T., Li, Q., Ferry, J. G., and Karger, B. L. (2006) New algorithm for 15N/14N quantitation with LC-ESI-MS using an LTQ-FT mass spectrometer. J. Proteome Res. 5, 2039-2045
-
(2006)
J. Proteome Res.
, vol.5
, pp. 2039-2045
-
-
Andreev, V.P.1
Li, L.2
Rejtar, T.3
Li, Q.4
Ferry, J.G.5
Karger, B.L.6
-
56
-
-
0030180572
-
Ultrahigh-speed calculation of isotope distributions
-
Rockwood, A. L., and Van Orden, S. L. (1996) Ultrahigh-speed calculation of isotope distributions. Anal. Chem. 68, 2027-2030
-
(1996)
Anal. Chem.
, vol.68
, pp. 2027-2030
-
-
Rockwood, A.L.1
Van Orden, S.L.2
-
57
-
-
46849117040
-
Quantitative analysis of isotope distributions in proteomic mass spectrometry using least-squares Fourier transform convolution
-
Sperling, E., Bunner, A. E., Sykes, M. T., and Williamson, J. R. (2008) Quantitative analysis of isotope distributions in proteomic mass spectrometry using least-squares Fourier transform convolution. Anal. Chem. 80, 4906-4917
-
(2008)
Anal. Chem.
, vol.80
, pp. 4906-4917
-
-
Sperling, E.1
Bunner, A.E.2
Sykes, M.T.3
Williamson, J.R.4
-
58
-
-
77955131803
-
Computation of the isotopic distribution in two dimensions
-
Fernandez-de-Cossio, J. (2010) Computation of the isotopic distribution in two dimensions. Anal. Chem. 82, 6726-6729
-
(2010)
Anal. Chem.
, vol.82
, pp. 6726-6729
-
-
Fernandez-de-Cossio, J.1
-
59
-
-
34547101713
-
Efficient calculation of exact mass isotopic distributions
-
Snider, R. K. (2007) Efficient calculation of exact mass isotopic distributions. J. Am. Soc. Mass Spectrom. 18, 1511-1515
-
(2007)
J. Am. Soc. Mass Spectrom.
, vol.18
, pp. 1511-1515
-
-
Snider, R.K.1
-
60
-
-
0042553279
-
Smoothing and Differentiation of Data by Simplified Least Squares Procedures
-
Savitzky, A., and Golay, M. J. E. (1964) Smoothing and Differentiation of Data by Simplified Least Squares Procedures. Anal. Chem. 36, 1627-1639
-
(1964)
Anal. Chem.
, vol.36
, pp. 1627-1639
-
-
Savitzky, A.1
Golay, M.J.E.2
-
61
-
-
0033118799
-
Regulation of the heat-shock response
-
Yura, T., and Nakahigashi, K. (1999) Regulation of the heat-shock response. Curr. Opin. Microbiol. 2, 153-158
-
(1999)
Curr. Opin. Microbiol.
, vol.2
, pp. 153-158
-
-
Yura, T.1
Nakahigashi, K.2
-
62
-
-
33745464039
-
Selective identification of newly synthesized proteins in mammalian cells using bioorthogonal noncanonical amino acid tagging (BONCAT)
-
Dieterich, D. C., Link, A. J., Graumann, J., Tirrell, D. A., and Schuman, E. M. (2006) Selective identification of newly synthesized proteins in mammalian cells using bioorthogonal noncanonical amino acid tagging (BONCAT). Proc. Natl. Acad. Sci. U.S.A. 103, 9482-9487
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 9482-9487
-
-
Dieterich, D.C.1
Link, A.J.2
Graumann, J.3
Tirrell, D.A.4
Schuman, E.M.5
-
63
-
-
71049119342
-
Identification and quantitation of newly synthesized proteins in Escherichia coli by enrichment of azidohomoalaninelabeled peptides with diagonal chromatography
-
Kramer, G., Sprenger, R. R., Back, J., Dekker, H. L., Nessen, M. A., van Maarseveen, J. H., de Koning, L. J., Hellingwerf, K. J., de Jong, L., and de Koster, C. G. (2009) Identification and quantitation of newly synthesized proteins in Escherichia coli by enrichment of azidohomoalaninelabeled peptides with diagonal chromatography. Mol. Cell. Proteomics 8, 1599-1611
-
(2009)
Mol. Cell. Proteomics
, vol.8
, pp. 1599-1611
-
-
Kramer, G.1
Sprenger, R.R.2
Back, J.3
Dekker, H.L.4
Nessen, M.A.5
Van Maarseveen, J.H.6
De Koning, L.J.7
Hellingwerf, K.J.8
De Jong, L.9
De Koster, C.G.10
-
64
-
-
0023918675
-
Structure and function of bacterial sigma factors
-
Helmann, J. D., and Chamberlin, M. J. (1988) Structure and function of bacterial sigma factors. Annu. Rev. Biochem. 57, 839-872
-
(1988)
Annu. Rev. Biochem.
, vol.57
, pp. 839-872
-
-
Helmann, J.D.1
Chamberlin, M.J.2
-
65
-
-
65549101172
-
Regulation of Corynebacterium glutamicum heat shock response by the extracytoplas-mic- function sigma factor SigH and transcriptional regulators HspR and HrcA
-
Ehira, S., Teramoto, H., Inui, M., and Yukawa, H. (2009) Regulation of Corynebacterium glutamicum heat shock response by the extracytoplas-mic- function sigma factor SigH and transcriptional regulators HspR and HrcA. J. Bacteriol. 191, 2964-2972
-
(2009)
J. Bacteriol.
, vol.191
, pp. 2964-2972
-
-
Ehira, S.1
Teramoto, H.2
Inui, M.3
Yukawa, H.4
-
66
-
-
34347397183
-
The extracytoplasmic function-type sigma factor SigM of Corynebacterium glutamicum ATCC 13032 is involved in transcription of disulfide stress-related genes
-
Nakunst, D., Larisch, C., Huser, A. T., Tauch, A., Puhler, A., and Kalinowski, J. (2007) The extracytoplasmic function-type sigma factor SigM of Corynebacterium glutamicum ATCC 13032 is involved in transcription of disulfide stress-related genes. J. Bacteriol.189, 4696-4707
-
(2007)
J. Bacteriol.
, vol.189
, pp. 4696-4707
-
-
Nakunst, D.1
Larisch, C.2
Huser, A.T.3
Tauch, A.4
Puhler, A.5
Kalinowski, J.6
-
67
-
-
0037174294
-
Genome-wide transcription profiling of Corynebacterium glutamicum after heat shock and during growth on acetate and glucose
-
Muffler, A., Bettermann, S., Haushalter, M., Horlein, A., Neveling, U., Schramm, M., and Sorgenfrei, O. (2002) Genome-wide transcription profiling of Corynebacterium glutamicum after heat shock and during growth on acetate and glucose. J. Biotechnol. 98, 255-268
-
(2002)
J. Biotechnol.
, vol.98
, pp. 255-268
-
-
Muffler, A.1
Bettermann, S.2
Haushalter, M.3
Horlein, A.4
Neveling, U.5
Schramm, M.6
Sorgenfrei, O.7
-
68
-
-
13244282994
-
Heat shock proteome analysis of wild-type Corynebacterium glutamicum ATCC 13032 and a spontaneous mutant lacking GroEL1, a dispensable chaperone
-
Barreiro, C., Gonzalez-Lavado, E., Brand, S., Tauch, A., and Martin, J. F. (2005) Heat shock proteome analysis of wild-type Corynebacterium glutamicum ATCC 13032 and a spontaneous mutant lacking GroEL1, a dispensable chaperone. J. Bacteriol. 187, 884-889
-
(2005)
J. Bacteriol.
, vol.187
, pp. 884-889
-
-
Barreiro, C.1
Gonzalez-Lavado, E.2
Brand, S.3
Tauch, A.4
Martin, J.F.5
-
69
-
-
3042817164
-
Transcriptional analysis of the groES-groEL1, groEL2, and dnaK genes in Corynebacterium glutamicum: Characterization of heat shock-induced promoters
-
Barreiro, C., Gonzalez-Lavado, E., Patek, M., and Martin, J. F. (2004) Transcriptional analysis of the groES-groEL1, groEL2, and dnaK genes in Corynebacterium glutamicum: characterization of heat shock-induced promoters. J. Bacteriol. 186, 4813-4817
-
(2004)
J. Bacteriol.
, vol.186
, pp. 4813-4817
-
-
Barreiro, C.1
Gonzalez-Lavado, E.2
Patek, M.3
Martin, J.F.4
-
70
-
-
0026783722
-
An analysis of the effect of changes in growth temperature on proteolysis in vivo in the psychrophilic bacterium Vibrio sp. strain ANT-300
-
Araki, T. (1992) An analysis of the effect of changes in growth temperature on proteolysis in vivo in the psychrophilic bacterium Vibrio sp. strain ANT-300. J. Gen. Microbiol. 138, 2075-2082
-
(1992)
J. Gen. Microbiol.
, vol.138
, pp. 2075-2082
-
-
Araki, T.1
-
71
-
-
70649093033
-
Stable isotope metabolic labeling with a novel N-enriched bacteria diet for improved proteomic analyses of mouse models for psychopathologies
-
Frank, E., Kessler, M. S., Filiou, M. D., Zhang, Y., Maccarrone, G., Reckow, S., Bunck, M., Heumann, H., Turck, C. W., Landgraf, R., and Hambsch, B. (2009) Stable isotope metabolic labeling with a novel N-enriched bacteria diet for improved proteomic analyses of mouse models for psychopathologies. PLoS One 4, e7821
-
(2009)
PLoS One
, vol.4
-
-
Frank, E.1
Kessler, M.S.2
Filiou, M.D.3
Zhang, Y.4
Maccarrone, G.5
Reckow, S.6
Bunck, M.7
Heumann, H.8
Turck, C.W.9
Landgraf, R.10
Hambsch, B.11
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