-
1
-
-
70449622561
-
Media containing aromatic compounds induce peculiar proteins in Acinetobacter radioresistens, as revealed by proteome analysis
-
Giuffrida, M. G., Pessione, E., Mazzoli, R., Dellavalle, G. et al., Media containing aromatic compounds induce peculiar proteins in Acinetobacter radioresistens, as revealed by proteome analysis. Electrophoresis 2001, 22, 1705-1711.
-
(2001)
Electrophoresis
, vol.22
, pp. 1705-1711
-
-
Giuffrida, M.G.1
Pessione, E.2
Mazzoli, R.3
Dellavalle, G.4
-
2
-
-
0038385433
-
Membrane proteome of Acinetobacter radioresistens S13 during aromatic exposure
-
Pessione, E., Giuffrida, M. G., Prunotto, L., Barello, C. et al., Membrane proteome of Acinetobacter radioresistens S13 during aromatic exposure. Proteomics 2003, 3, 1070-1076.
-
(2003)
Proteomics
, vol.3
, pp. 1070-1076
-
-
Pessione, E.1
Giuffrida, M.G.2
Prunotto, L.3
Barello, C.4
-
3
-
-
33846990172
-
Characterization of beta-ketoadipate pathway from multi-drug resistance bacterium, Acinetobacter baumannii DU202 by proteomic approach
-
Park, S. H., Kim, J. W., Yun, S. H., Leem, S. H. et al., Characterization of beta-ketoadipate pathway from multi-drug resistance bacterium, Acinetobacter baumannii DU202 by proteomic approach. J. Microbiol. 2006, 44, 632-640.
-
(2006)
J. Microbiol
, vol.44
, pp. 632-640
-
-
Park, S.H.1
Kim, J.W.2
Yun, S.H.3
Leem, S.H.4
-
4
-
-
3042772559
-
Proteome analysis of gentisate-induced response in Pseudomonas alcaligenes NCIB 9867
-
Zhao, B., Yeo, C. C., Lee, C. C., Geng, A. et al., Proteome analysis of gentisate-induced response in Pseudomonas alcaligenes NCIB 9867. Proteomics 2004, 4, 2028-2036.
-
(2004)
Proteomics
, vol.4
, pp. 2028-2036
-
-
Zhao, B.1
Yeo, C.C.2
Lee, C.C.3
Geng, A.4
-
5
-
-
8744256465
-
Proteome analysis of Pseudomonas sp. K82 biodegradation pathways
-
Kim, S. I., Kim, J. Y., Yun, S. H., Kim, J. H. et al., Proteome analysis of Pseudomonas sp. K82 biodegradation pathways. Proteomics 2004, 4, 3610-3621.
-
(2004)
Proteomics
, vol.4
, pp. 3610-3621
-
-
Kim, S.I.1
Kim, J.Y.2
Yun, S.H.3
Kim, J.H.4
-
6
-
-
18844410520
-
Proteome investigation of the global regulatory role of sigma 54 in response to gentisate induction in Pseudomonas alcaligenes NCIMB 9867
-
Zhao, B., Yeo, C. C., Poh, C. L., Proteome investigation of the global regulatory role of sigma 54 in response to gentisate induction in Pseudomonas alcaligenes NCIMB 9867. Proteomics 2005, 5, 1868-1876.
-
(2005)
Proteomics
, vol.5
, pp. 1868-1876
-
-
Zhao, B.1
Yeo, C.C.2
Poh, C.L.3
-
7
-
-
33644540488
-
Analysis of aromatic catabolic pathways in Pseudomonas putida KT 2440 using a combined proteomic approach: 2-DE/MS and cleavable isotope-coded affinity tag analysis
-
Kim, Y. H., Cho, K., Yun, S. H., Kim, J. Y. et al., Analysis of aromatic catabolic pathways in Pseudomonas putida KT 2440 using a combined proteomic approach: 2-DE/MS and cleavable isotope-coded affinity tag analysis. Proteomics 2006, 6, 1301-1318.
-
(2006)
Proteomics
, vol.6
, pp. 1301-1318
-
-
Kim, Y.H.1
Cho, K.2
Yun, S.H.3
Kim, J.Y.4
-
8
-
-
34249802595
-
Proteome analysis of heat shock protein expression in Pseudomonas alcaligenes NCIMB 9867 in response to gentisate exposure and elevated growth temperature
-
Zhao, B., Yeo, C. C., Tan, C. L., Poh, C. L., Proteome analysis of heat shock protein expression in Pseudomonas alcaligenes NCIMB 9867 in response to gentisate exposure and elevated growth temperature. Biotechnol. Bioeng. 2007, 97, 506-514.
-
(2007)
Biotechnol. Bioeng
, vol.97
, pp. 506-514
-
-
Zhao, B.1
Yeo, C.C.2
Tan, C.L.3
Poh, C.L.4
-
9
-
-
35649027921
-
Modulation of glucose transport causes preferential utilization of aromatic compounds in Pseudomonas putida CSV86
-
Basu, A., Shrivastava, R., Basu, B., Apte, S. K., Phale, P. S., Modulation of glucose transport causes preferential utilization of aromatic compounds in Pseudomonas putida CSV86. J. Bacteriol. 2007, 189, 7556-7562.
-
(2007)
J. Bacteriol
, vol.189
, pp. 7556-7562
-
-
Basu, A.1
Shrivastava, R.2
Basu, B.3
Apte, S.K.4
Phale, P.S.5
-
10
-
-
10644256477
-
Identification of proteins induced by polycyclic aromatic hydrocarbon in Mycobacterium vanbaalenii PYR-1 using twodimensional polyacrylamide gel electrophoresis and de novo sequencing methods
-
Kim, S. J., Jones, R. C., Cha, C. J., Kweon, O. et al., Identification of proteins induced by polycyclic aromatic hydrocarbon in Mycobacterium vanbaalenii PYR-1 using twodimensional polyacrylamide gel electrophoresis and de novo sequencing methods. Proteomics 2004, 4, 3899-3908.
-
(2004)
Proteomics
, vol.4
, pp. 3899-3908
-
-
Kim, S.J.1
Jones, R.C.2
Cha, C.J.3
Kweon, O.4
-
11
-
-
33845538712
-
Study of biochemical pathways and enzymes involved in pyrene degradation by Mycobacterium sp. strain KMS
-
Liang, Y., Gardner, D. R., Miller, C. D., Chen, D. et al., Study of biochemical pathways and enzymes involved in pyrene degradation by Mycobacterium sp. strain KMS. Appl. Environ. Microbiol. 2006, 72, 7821-7828.
-
(2006)
Appl. Environ. Microbiol
, vol.72
, pp. 7821-7828
-
-
Liang, Y.1
Gardner, D.R.2
Miller, C.D.3
Chen, D.4
-
12
-
-
33846251226
-
Complete and integrated pyrene degradation pathway in Mycobacterium vanbaalenii PYR-1 based on systems biology
-
Kim, S. J., Kweon, O., Jones, R. C., Freeman, J. P. et al., Complete and integrated pyrene degradation pathway in Mycobacterium vanbaalenii PYR-1 based on systems biology. J. Bacteriol. 2007, 189, 464-472.
-
(2007)
J. Bacteriol
, vol.189
, pp. 464-472
-
-
Kim, S.J.1
Kweon, O.2
Jones, R.C.3
Freeman, J.P.4
-
13
-
-
34347401651
-
A polyomic approach to elucidate the fluoranthene-degradative pathway in Mycobacterium vanbaalenii PYR-1
-
Kweon, O., Kim, S. J., Jones, R. C., Freeman, J. P. et al., A polyomic approach to elucidate the fluoranthene-degradative pathway in Mycobacterium vanbaalenii PYR-1. J. Bacteriol. 2007, 189, 4635-4647.
-
(2007)
J. Bacteriol
, vol.189
, pp. 4635-4647
-
-
Kweon, O.1
Kim, S.J.2
Jones, R.C.3
Freeman, J.P.4
-
14
-
-
34347391727
-
Fluoranthene metabolism and associated proteins in Mycobacterium sp. JS14
-
Lee, S. E., Seo, J. S., Keum, Y. S., Lee, K. J., Li, Q. X., Fluoranthene metabolism and associated proteins in Mycobacterium sp. JS14. Proteomics 2007, 7, 2059-2069.
-
(2007)
Proteomics
, vol.7
, pp. 2059-2069
-
-
Lee, S.E.1
Seo, J.S.2
Keum, Y.S.3
Lee, K.J.4
Li, Q.X.5
-
15
-
-
20444506446
-
Catabolism of benzoate and phthalate in Rhodococcus sp. strain RHA1: Redundancies and convergence
-
Patrauchan, M. A., Florizone, C., Dosanjh, M., Mohn, W. W. et al., Catabolism of benzoate and phthalate in Rhodococcus sp. strain RHA1: redundancies and convergence. J. Bacteriol. 2005, 187, 4050-4063.
-
(2005)
J. Bacteriol
, vol.187
, pp. 4050-4063
-
-
Patrauchan, M.A.1
Florizone, C.2
Dosanjh, M.3
Mohn, W.W.4
-
16
-
-
21144442133
-
Phenylacetate catabolism in Rhodococcus sp. strain RHA1: A central pathway for degradation of aromatic compounds
-
Navarro-Llorens, J. M., Patrauchan, M. A., Stewart, G. R., Davies, J. E. et al., Phenylacetate catabolism in Rhodococcus sp. strain RHA1: a central pathway for degradation of aromatic compounds. J. Bacteriol. 2005, 187, 4497-4504.
-
(2005)
J. Bacteriol
, vol.187
, pp. 4497-4504
-
-
Navarro-Llorens, J.M.1
Patrauchan, M.A.2
Stewart, G.R.3
Davies, J.E.4
-
17
-
-
33750591905
-
Proteomic and transcriptional characterization of aromatic degradation pathways in Rhodoccocus sp. strain TFB
-
Tomas-Gallardo, L., Canosa, I., Santero, E., Camafeita, E. et al., Proteomic and transcriptional characterization of aromatic degradation pathways in Rhodoccocus sp. strain TFB. Proteomics 2006, 6, S119-S132.
-
(2006)
Proteomics
, vol.6
-
-
Tomas-Gallardo, L.1
Canosa, I.2
Santero, E.3
Camafeita, E.4
-
18
-
-
37549066316
-
Roles of ring-hydroxylating dioxygenases in styrene and benzene catabolism in Rhodococcus jostii RHA1
-
Patrauchan, M. A., Florizone, C., Eapen, S., Gomez-Gil, L. et al., Roles of ring-hydroxylating dioxygenases in styrene and benzene catabolism in Rhodococcus jostii RHA1. J. Bacteriol. 2008, 190, 37-47.
-
(2008)
J. Bacteriol
, vol.190
, pp. 37-47
-
-
Patrauchan, M.A.1
Florizone, C.2
Eapen, S.3
Gomez-Gil, L.4
-
19
-
-
0034066471
-
Membrane proteins and proteomics: Un amour impossible?
-
Santoni, V., Molloy, M., Rabilloud, T., Membrane proteins and proteomics: un amour impossible? Electrophoresis 2000, 21, 1054-1070.
-
(2000)
Electrophoresis
, vol.21
, pp. 1054-1070
-
-
Santoni, V.1
Molloy, M.2
Rabilloud, T.3
-
20
-
-
55949087672
-
Comparison of the membrane subproteomes during growth of a new pseudomonas strain on lysogeny broth medium, glucose, and phenol
-
Papasotiriou, D. G., Markoutsa, S., Meyer, B., Papadioti, A. et al., Comparison of the membrane subproteomes during growth of a new pseudomonas strain on lysogeny broth medium, glucose, and phenol. J. Proteome Res. 2008, 7, 4278-4288.
-
(2008)
J. Proteome Res
, vol.7
, pp. 4278-4288
-
-
Papasotiriou, D.G.1
Markoutsa, S.2
Meyer, B.3
Papadioti, A.4
-
21
-
-
33645466243
-
Toward the complete membrane proteome: High coverage of integral membrane proteins through transmembrane peptide detection
-
Fischer, F., Wolters, D., Rogner, M., Poetsch, A., Toward the complete membrane proteome: high coverage of integral membrane proteins through transmembrane peptide detection. Mol. Cell Proteomics 2006, 5, 444-453.
-
(2006)
Mol. Cell Proteomics
, vol.5
, pp. 444-453
-
-
Fischer, F.1
Wolters, D.2
Rogner, M.3
Poetsch, A.4
-
22
-
-
0033535961
-
Accurate quantitation of protein expression and site-specific phosphorylation
-
Oda, Y., Huang, K., Cross, F. R., Cowburn, D., Chait, B. T., Accurate quantitation of protein expression and site-specific phosphorylation. Proc. Natl. Acad. Sci. USA 1999, 96, 6591-6596.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 6591-6596
-
-
Oda, Y.1
Huang, K.2
Cross, F.R.3
Cowburn, D.4
Chait, B.T.5
-
23
-
-
0036583926
-
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
-
Ong, S. E., Blagoev, B., Kratchmarova, I., Kristensen, D. B. et al., Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol. Cell Proteomics 2002, 1, 376-386.
-
(2002)
Mol. Cell Proteomics
, vol.1
, pp. 376-386
-
-
Ong, S.E.1
Blagoev, B.2
Kratchmarova, I.3
Kristensen, D.B.4
-
24
-
-
0032875697
-
Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
-
Gygi, S. P., Rist, B., Gerber, S. A., Turecek, F. et al., Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nat. Biotechnol. 1999, 17, 994-999.
-
(1999)
Nat. Biotechnol
, vol.17
, pp. 994-999
-
-
Gygi, S.P.1
Rist, B.2
Gerber, S.A.3
Turecek, F.4
-
25
-
-
19944432197
-
Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
-
Ross, P. L., Huang, Y. N., Marchese, J. N., Williamson, B. et al., Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Mol. Cell Proteomics 2004, 3, 1154-1169.
-
(2004)
Mol. Cell Proteomics
, vol.3
, pp. 1154-1169
-
-
Ross, P.L.1
Huang, Y.N.2
Marchese, J.N.3
Williamson, B.4
-
26
-
-
3242731195
-
-
Liu, H., Sadygov, R. G., Yates, J. R., 3rd. A model for random sampling and estimation of relative protein abundance in shotgun proteomics. Anal. Chem. 2004, 76, 4193-4201.
-
Liu, H., Sadygov, R. G., Yates, J. R., 3rd. A model for random sampling and estimation of relative protein abundance in shotgun proteomics. Anal. Chem. 2004, 76, 4193-4201.
-
-
-
-
27
-
-
38549091691
-
ProtQuant: A tool for the label-free quantification of MudPIT proteomics data
-
Bridges, S. M., Magee, G. B., Wang, N., Williams, W. P. et al., ProtQuant: a tool for the label-free quantification of MudPIT proteomics data. BMC Bioinformatics 2007, 8, S24.
-
(2007)
BMC Bioinformatics
, vol.8
-
-
Bridges, S.M.1
Magee, G.B.2
Wang, N.3
Williams, W.P.4
-
28
-
-
43849089302
-
Characterization of anaerobic catabolism of p-coumarate in Rhodopseudomonas palustris by integrating transcriptomics and quantitative proteomics
-
Pan, C., Oda, Y., Lankford, P. K., Zhang, B. et al., Characterization of anaerobic catabolism of p-coumarate in Rhodopseudomonas palustris by integrating transcriptomics and quantitative proteomics. Mol. Cell Proteomics 2008, 7, 938-948.
-
(2008)
Mol. Cell Proteomics
, vol.7
, pp. 938-948
-
-
Pan, C.1
Oda, Y.2
Lankford, P.K.3
Zhang, B.4
-
29
-
-
0032858977
-
L-Glutamate and L-lysine: Traditional products with impetuous developments
-
Eggeling, L., Sahm, H., L-Glutamate and L-lysine: traditional products with impetuous developments. Appl. Microbiol. Biotechnol. 1999, 52, 146-153.
-
(1999)
Appl. Microbiol. Biotechnol
, vol.52
, pp. 146-153
-
-
Eggeling, L.1
Sahm, H.2
-
30
-
-
0037174294
-
Genome-wide transcription profiling of Corynebacterium glutamicum after heat shock and during growth on acetate and glucose
-
Muffler, A., Bettermann, S., Haushalter, M., Horlein, A. et al., Genome-wide transcription profiling of Corynebacterium glutamicum after heat shock and during growth on acetate and glucose. J. Biotechnol. 2002, 98, 255-268.
-
(2002)
J. Biotechnol
, vol.98
, pp. 255-268
-
-
Muffler, A.1
Bettermann, S.2
Haushalter, M.3
Horlein, A.4
-
31
-
-
0345359589
-
Development of a Corynebacterium glutamicum DNA microarray and validation by genome-wide expression profiling during growth with propionate as carbon source
-
Huser, A. T., Becker, A., Brune, I., Dondrup, M. et al., Development of a Corynebacterium glutamicum DNA microarray and validation by genome-wide expression profiling during growth with propionate as carbon source. J. Biotechnol. 2003, 106, 269-286.
-
(2003)
J. Biotechnol
, vol.106
, pp. 269-286
-
-
Huser, A.T.1
Becker, A.2
Brune, I.3
Dondrup, M.4
-
32
-
-
51949091671
-
Ethanol catabolism in Corynebacterium glutamicum
-
Arndt, A., Auchter, M., Ishige, T., Wendisch, V. F., Eikmanns, B. J., Ethanol catabolism in Corynebacterium glutamicum. J. Mol. Microbiol. Biotechnol. 2008, 15, 222-233.
-
(2008)
J. Mol. Microbiol. Biotechnol
, vol.15
, pp. 222-233
-
-
Arndt, A.1
Auchter, M.2
Ishige, T.3
Wendisch, V.F.4
Eikmanns, B.J.5
-
33
-
-
18444403458
-
Adaptation of Corynebacterium glutamicum to ammonium limitation: A global analysis using transcriptome and proteome techniques
-
Silberbach, M., Schafer, M., Huser, A. T., Kalinowski, J. et al., Adaptation of Corynebacterium glutamicum to ammonium limitation: a global analysis using transcriptome and proteome techniques. Appl. Environ. Microbiol. 2005, 71, 2391-2402.
-
(2005)
Appl. Environ. Microbiol
, vol.71
, pp. 2391-2402
-
-
Silberbach, M.1
Schafer, M.2
Huser, A.T.3
Kalinowski, J.4
-
34
-
-
34347397789
-
Characterization of citrate utilization in Corynebacterium glutamicum by transcriptome and proteome analysis
-
Polen, T., Schluesener, D., Poetsch, A., Bott, M., Wendisch, V. F., Characterization of citrate utilization in Corynebacterium glutamicum by transcriptome and proteome analysis. FEMS Microbiol. Lett. 2007, 273, 109-119.
-
(2007)
FEMS Microbiol. Lett
, vol.273
, pp. 109-119
-
-
Polen, T.1
Schluesener, D.2
Poetsch, A.3
Bott, M.4
Wendisch, V.F.5
-
35
-
-
0347761177
-
Comparative metabolic flux analysis of lysine-producing Corynebacterium glutamicum cultured on glucose or fructose
-
Kiefer, P., Heinzle, E., Zelder, O., Wittmann, C., Comparative metabolic flux analysis of lysine-producing Corynebacterium glutamicum cultured on glucose or fructose. Appl. Environ. Microbiol. 2004, 70, 229-239.
-
(2004)
Appl. Environ. Microbiol
, vol.70
, pp. 229-239
-
-
Kiefer, P.1
Heinzle, E.2
Zelder, O.3
Wittmann, C.4
-
36
-
-
10444258178
-
Metabolic fluxes in Corynebacterium glutamicum during lysine production with sucrose as carbon source
-
Wittmann, C., Kiefer, P., Zelder, O., Metabolic fluxes in Corynebacterium glutamicum during lysine production with sucrose as carbon source. Appl. Environ. Microbiol. 2004, 70, 7277-7287.
-
(2004)
Appl. Environ. Microbiol
, vol.70
, pp. 7277-7287
-
-
Wittmann, C.1
Kiefer, P.2
Zelder, O.3
-
37
-
-
34047148860
-
Transcriptional regulation of catabolic pathways for aromatic compounds in Corynebacterium glutamicum
-
Brinkrolf, K., Brune, I., Tauch, A., Transcriptional regulation of catabolic pathways for aromatic compounds in Corynebacterium glutamicum. Genet. Mol. Res. 2006, 5, 773-789.
-
(2006)
Genet. Mol. Res
, vol.5
, pp. 773-789
-
-
Brinkrolf, K.1
Brune, I.2
Tauch, A.3
-
38
-
-
1842810904
-
Functional identification of the gene locus ncgl2319 and characterization of catechol 1,2-dioxygenase in Corynebacterium glutamicum
-
Shen, X. H., Liu, Z. P., Liu, S. J., Functional identification of the gene locus ncgl2319 and characterization of catechol 1,2-dioxygenase in Corynebacterium glutamicum. Biotechnol. Lett. 2004, 26, 575-580.
-
(2004)
Biotechnol. Lett
, vol.26
, pp. 575-580
-
-
Shen, X.H.1
Liu, Z.P.2
Liu, S.J.3
-
39
-
-
24044500645
-
Key enzymes of the protocatechuate branch of the beta-ketoadipate pathway for aromatic degradation in Corynebacterium glutamicum
-
Shen, X., Liu, S., Key enzymes of the protocatechuate branch of the beta-ketoadipate pathway for aromatic degradation in Corynebacterium glutamicum. Sci. China C Life Sci. 2005, 48, 241-249.
-
(2005)
Sci. China C Life Sci
, vol.48
, pp. 241-249
-
-
Shen, X.1
Liu, S.2
-
40
-
-
22144441744
-
Functional identification of novel genes involved in the glutathione-independent gentisate pathway in Corynebacterium glutamicum
-
Shen, X. H., Jiang, C. Y., Huang, Y., Liu, Z. P., Liu, S. J., Functional identification of novel genes involved in the glutathione-independent gentisate pathway in Corynebacterium glutamicum. Appl. Environ. Microbiol. 2005, 71, 3442-3452.
-
(2005)
Appl. Environ. Microbiol
, vol.71
, pp. 3442-3452
-
-
Shen, X.H.1
Jiang, C.Y.2
Huang, Y.3
Liu, Z.P.4
Liu, S.J.5
-
41
-
-
33947372628
-
Genome-wide investigation of aromatic acid transporters in Corynebacterium glutamicum
-
Chaudhry, M. T., Huang, Y., Shen, X. H., Poetsch, A. et al., Genome-wide investigation of aromatic acid transporters in Corynebacterium glutamicum. Microbiology 2007, 153, 857-865.
-
(2007)
Microbiology
, vol.153
, pp. 857-865
-
-
Chaudhry, M.T.1
Huang, Y.2
Shen, X.H.3
Poetsch, A.4
-
42
-
-
35649025273
-
Comparative proteomes of Corynebacterium glutamicum grown on aromatic compounds revealed novel proteins involved in aromatic degradation and a clear link between aromatic catabolism and gluconeogenesis via fructose-1,6- bisphosphatase
-
Qi, S. W., Chaudhry, M. T., Zhang, Y., Meng, B. et al., Comparative proteomes of Corynebacterium glutamicum grown on aromatic compounds revealed novel proteins involved in aromatic degradation and a clear link between aromatic catabolism and gluconeogenesis via fructose-1,6- bisphosphatase. Proteomics 2007, 7, 3775-3787.
-
(2007)
Proteomics
, vol.7
, pp. 3775-3787
-
-
Qi, S.W.1
Chaudhry, M.T.2
Zhang, Y.3
Meng, B.4
-
43
-
-
55749092578
-
Bacterial membrane proteomics
-
Poetsch, A., Wolters, D., Bacterial membrane proteomics. Proteomics 2008, 8, 4100-4122.
-
(2008)
Proteomics
, vol.8
, pp. 4100-4122
-
-
Poetsch, A.1
Wolters, D.2
-
44
-
-
25644459115
-
Role of the ssu and seu genes of Corynebacterium glutamicum ATCC 13032 in utilization of sulfonates and sulfonate esters as sulfur sources
-
Koch, D. J., Ruckert, C., Rey, D. A., Mix, A. et al., Role of the ssu and seu genes of Corynebacterium glutamicum ATCC 13032 in utilization of sulfonates and sulfonate esters as sulfur sources. Appl. Environ. Microbiol. 2005, 71, 6104-6114.
-
(2005)
Appl. Environ. Microbiol
, vol.71
, pp. 6104-6114
-
-
Koch, D.J.1
Ruckert, C.2
Rey, D.A.3
Mix, A.4
-
45
-
-
34147158722
-
A novel deaminase involved in chloronitrobenzene and nitrobenzene degradation with Comamonas sp. strain CNB-1
-
Liu, L., Wu, J. F., Ma, Y. F., Wang, S. Y. et al., A novel deaminase involved in chloronitrobenzene and nitrobenzene degradation with Comamonas sp. strain CNB-1. J. Bacteriol. 2007, 189, 2677-2682.
-
(2007)
J. Bacteriol
, vol.189
, pp. 2677-2682
-
-
Liu, L.1
Wu, J.F.2
Ma, Y.F.3
Wang, S.Y.4
-
46
-
-
12444259324
-
The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins
-
Kalinowski, J., Bathe, B., Bartels, D., Bischoff, N. et al., The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins. J. Biotechnol. 2003, 104, 5-25.
-
(2003)
J. Biotechnol
, vol.104
, pp. 5-25
-
-
Kalinowski, J.1
Bathe, B.2
Bartels, D.3
Bischoff, N.4
-
47
-
-
9144252016
-
The Gene Ontology Annotation (GOA) Database: Sharing knowledge in Uniprot with gene ontology
-
Camon, E., Magrane, M., Barrell, D., Lee, V. et al., The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with gene ontology. Nucleic Acids Res. 2004, 32, D262-D266.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Camon, E.1
Magrane, M.2
Barrell, D.3
Lee, V.4
-
48
-
-
0036835575
-
Efficient electrotransformation of Corynebacterium diphtheriae with a mini-replicon derived from the Corynebacterium glutamicum plasmid pGA1
-
Tauch, A., Kirchner, O., Loffler, B., Gotker, S. et al., Efficient electrotransformation of Corynebacterium diphtheriae with a mini-replicon derived from the Corynebacterium glutamicum plasmid pGA1. Curr. Microbiol. 2002, 45, 362-367.
-
(2002)
Curr. Microbiol
, vol.45
, pp. 362-367
-
-
Tauch, A.1
Kirchner, O.2
Loffler, B.3
Gotker, S.4
-
49
-
-
32544455331
-
Randomized sequence databases for tandem mass spectrometry peptide and protein identification
-
Higdon, R., Hogan, J. M., Van Belle, G., Kolker, E., Randomized sequence databases for tandem mass spectrometry peptide and protein identification. OMICS 2005, 9, 364-379.
-
(2005)
OMICS
, vol.9
, pp. 364-379
-
-
Higdon, R.1
Hogan, J.M.2
Van Belle, G.3
Kolker, E.4
-
50
-
-
33749062913
-
ProRata: A quantitative proteomics program for accurate protein abundance ratio estimation with confidence interval evaluation
-
Pan, C., Kora, G., McDonald, W. H., Tabb, D. L. et al., ProRata: a quantitative proteomics program for accurate protein abundance ratio estimation with confidence interval evaluation. Anal. Chem. 2006, 78, 7121-7131.
-
(2006)
Anal. Chem
, vol.78
, pp. 7121-7131
-
-
Pan, C.1
Kora, G.2
McDonald, W.H.3
Tabb, D.L.4
-
51
-
-
0346122950
-
-
MacCoss, M. J., Wu, C. C., Liu, H., Sadygov, R., Yates, J. R., 3rd. A correlation algorithm for the automated quantitative analysis of shotgun proteomics data. Anal. Chem. 2003, 75, 6912-6921.
-
MacCoss, M. J., Wu, C. C., Liu, H., Sadygov, R., Yates, J. R., 3rd. A correlation algorithm for the automated quantitative analysis of shotgun proteomics data. Anal. Chem. 2003, 75, 6912-6921.
-
-
-
-
52
-
-
0036393898
-
-
Tabb, D. L., McDonald, W. H., Yates, J. R., 3rd. DTASelect and contrast: tools for assembling and comparing protein identifications from shotgun proteomics. J. Proteome Res. 2002, 1, 21-26.
-
Tabb, D. L., McDonald, W. H., Yates, J. R., 3rd. DTASelect and contrast: tools for assembling and comparing protein identifications from shotgun proteomics. J. Proteome Res. 2002, 1, 21-26.
-
-
-
-
53
-
-
0035687554
-
Assessing gene significance from cDNA microarray expression data via mixed models
-
Wolfinger, R. D., Gibson, G., Wolfinger, E. D., Bennett, L. et al., Assessing gene significance from cDNA microarray expression data via mixed models. J. Comput. Biol. 2001, 8, 625-637.
-
(2001)
J. Comput. Biol
, vol.8
, pp. 625-637
-
-
Wolfinger, R.D.1
Gibson, G.2
Wolfinger, E.D.3
Bennett, L.4
-
54
-
-
38049144241
-
CoryneRegNet 4.0 - a reference database for corynebacterial gene regulatory networks
-
Baumbach, J., CoryneRegNet 4.0 - a reference database for corynebacterial gene regulatory networks. BMC Bioinformatics 2007, 8, 429.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 429
-
-
Baumbach, J.1
-
55
-
-
0035910270
-
Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
-
Krogh, A., Larsson, B., von Heijne, G., Sonnhammer, E. L., Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 2001, 305, 567-580.
-
(2001)
J. Mol. Biol
, vol.305
, pp. 567-580
-
-
Krogh, A.1
Larsson, B.2
von Heijne, G.3
Sonnhammer, E.L.4
-
56
-
-
34548462446
-
Protein abundance ratios for global studies of prokaryotes
-
Xia, Q., Hendrickson, E. L., Wang, T., Lamont, R. J. et al., Protein abundance ratios for global studies of prokaryotes. Proteomics 2007, 7, 2904-2919.
-
(2007)
Proteomics
, vol.7
, pp. 2904-2919
-
-
Xia, Q.1
Hendrickson, E.L.2
Wang, T.3
Lamont, R.J.4
-
57
-
-
0030852236
-
Isolation of the putP gene of Corynebacterium glutamicum and characterization of a low-affinity uptake system for compatible solutes
-
Peter, H., Bader, A., Burkovski, A., Lambert, C., Kramer, R., Isolation of the putP gene of Corynebacterium glutamicum and characterization of a low-affinity uptake system for compatible solutes. Arch. Microbiol. 1997, 168, 143-151.
-
(1997)
Arch. Microbiol
, vol.168
, pp. 143-151
-
-
Peter, H.1
Bader, A.2
Burkovski, A.3
Lambert, C.4
Kramer, R.5
-
58
-
-
0028944577
-
Structure of the gluABCD cluster encoding the glutamate uptake system of Corynebacterium glutamicum
-
Kronemeyer, W., Peekhaus, N., Kramer, R., Sahm, H., Eggeling, L., Structure of the gluABCD cluster encoding the glutamate uptake system of Corynebacterium glutamicum. J. Bacteriol. 1995, 177, 1152-1158.
-
(1995)
J. Bacteriol
, vol.177
, pp. 1152-1158
-
-
Kronemeyer, W.1
Peekhaus, N.2
Kramer, R.3
Sahm, H.4
Eggeling, L.5
-
59
-
-
57049180205
-
Methionine uptake in Corynebacterium glutamicum by MetQNI and by MetPS, a novel methionine and alanine importer of the NSS neurotransmitter transporter family
-
Trotschel, C., Follmann, M., Nettekoven, J. A., Mohrbach, T. et al., Methionine uptake in Corynebacterium glutamicum by MetQNI and by MetPS, a novel methionine and alanine importer of the NSS neurotransmitter transporter family. Biochemistry 2008, 47, 12698-12709.
-
(2008)
Biochemistry
, vol.47
, pp. 12698-12709
-
-
Trotschel, C.1
Follmann, M.2
Nettekoven, J.A.3
Mohrbach, T.4
-
60
-
-
0037469309
-
Molecular and biochemical characterization of mechanosensitive channels in Corynebacterium glutamicum
-
Nottebrock, D., Meyer, U., Kramer, R., Morbach, S., Molecular and biochemical characterization of mechanosensitive channels in Corynebacterium glutamicum. FEMS Microbiol. Lett. 2003, 218, 305-309.
-
(2003)
FEMS Microbiol. Lett
, vol.218
, pp. 305-309
-
-
Nottebrock, D.1
Meyer, U.2
Kramer, R.3
Morbach, S.4
-
61
-
-
6344272244
-
Deletion of the genes encoding the MtrA-MtrB two-component system of Corynebacterium glutamicum has a strong influence on cell morphology, antibiotics susceptibility and expression of genes involved in osmoprotection
-
Moker, N., Brocker, M., Schaffer, S., Kramer, R. et al., Deletion of the genes encoding the MtrA-MtrB two-component system of Corynebacterium glutamicum has a strong influence on cell morphology, antibiotics susceptibility and expression of genes involved in osmoprotection. Mol. Microbiol. 2004, 54, 420-438.
-
(2004)
Mol. Microbiol
, vol.54
, pp. 420-438
-
-
Moker, N.1
Brocker, M.2
Schaffer, S.3
Kramer, R.4
-
62
-
-
33750345361
-
Evidence for activator and repressor functions of the response regulator MtrA from Corynebacterium glutamicum
-
Brocker, M., Bott, M., Evidence for activator and repressor functions of the response regulator MtrA from Corynebacterium glutamicum. FEMS Microbiol. Lett. 2006, 264, 205-212.
-
(2006)
FEMS Microbiol. Lett
, vol.264
, pp. 205-212
-
-
Brocker, M.1
Bott, M.2
-
63
-
-
63449129066
-
Identification and characterization of a bacterial transport system for the uptake of pyruvate, propionate, and acetate in Corynebacterium glutamicum
-
Jolkver, E., Emer, D., Ballan, S., Kramer, R. et al., Identification and characterization of a bacterial transport system for the uptake of pyruvate, propionate, and acetate in Corynebacterium glutamicum. J. Bacteriol. 2009, 191, 940-948.
-
(2009)
J. Bacteriol
, vol.191
, pp. 940-948
-
-
Jolkver, E.1
Emer, D.2
Ballan, S.3
Kramer, R.4
-
64
-
-
0038103996
-
Identification and functional analysis of six mycolyltransferase genes of Corynebacterium glutamicum ATCC 13032: The genes cop1, cmt1, and cmt2 can replace each other in the synthesis of trehalose dicorynomycolate, a component of the mycolic acid layer of the cell envelope
-
Brand, S., Niehaus, K., Puhler, A., Kalinowski, J., Identification and functional analysis of six mycolyltransferase genes of Corynebacterium glutamicum ATCC 13032: the genes cop1, cmt1, and cmt2 can replace each other in the synthesis of trehalose dicorynomycolate, a component of the mycolic acid layer of the cell envelope. Arch. Microbiol. 2003, 180, 33-44.
-
(2003)
Arch. Microbiol
, vol.180
, pp. 33-44
-
-
Brand, S.1
Niehaus, K.2
Puhler, A.3
Kalinowski, J.4
-
65
-
-
0031947495
-
The wzz (cld) protein in Escherichia coli: Amino acid sequence variation determines O-antigen chain length specificity
-
Franco, A. V., Liu, D., Reeves, P. R., The wzz (cld) protein in Escherichia coli: amino acid sequence variation determines O-antigen chain length specificity. J. Bacteriol. 1998, 180, 2670-2675.
-
(1998)
J. Bacteriol
, vol.180
, pp. 2670-2675
-
-
Franco, A.V.1
Liu, D.2
Reeves, P.R.3
-
66
-
-
22644436621
-
Bacillus anthracis CapD, belonging to the gamma-glutamyltranspeptidase family, is required for the covalent anchoring of capsule to peptidoglycan
-
Candela, T., Fouet, A., Bacillus anthracis CapD, belonging to the gamma-glutamyltranspeptidase family, is required for the covalent anchoring of capsule to peptidoglycan. Mol. Microbiol. 2005, 57, 717-726.
-
(2005)
Mol. Microbiol
, vol.57
, pp. 717-726
-
-
Candela, T.1
Fouet, A.2
-
67
-
-
0034543146
-
Rapid cloning of metK encoding methionine adenosyltransferase from Corynebacterium glutamicum by screening a genomic library on a high density colony-array
-
Grossmann, K., Herbster, K., Mack, M., Rapid cloning of metK encoding methionine adenosyltransferase from Corynebacterium glutamicum by screening a genomic library on a high density colony-array. FEMS Microbiol. Lett. 2000, 193, 99-103.
-
(2000)
FEMS Microbiol. Lett
, vol.193
, pp. 99-103
-
-
Grossmann, K.1
Herbster, K.2
Mack, M.3
-
68
-
-
26944462003
-
The transcriptional regulator SsuR activates expression of the Corynebacterium glutamicum sulphonate utilization genes in the absence of sulphate
-
Koch, D. J., Ruckert, C., Albersmeier, A., Huser, A. T. et al., The transcriptional regulator SsuR activates expression of the Corynebacterium glutamicum sulphonate utilization genes in the absence of sulphate. Mol. Microbiol. 2005, 58, 480-494.
-
(2005)
Mol. Microbiol
, vol.58
, pp. 480-494
-
-
Koch, D.J.1
Ruckert, C.2
Albersmeier, A.3
Huser, A.T.4
-
69
-
-
25644459307
-
Functional genomics and expression analysis of the Corynebacterium glutamicum fpr2-cysIXHDNYZ gene cluster involved in assimilatory sulphate reduction
-
Ruckert, C., Koch, D. J., Rey, D. A., Albersmeier, A. et al., Functional genomics and expression analysis of the Corynebacterium glutamicum fpr2-cysIXHDNYZ gene cluster involved in assimilatory sulphate reduction. BMC Genomics 2005, 6, 121.
-
(2005)
BMC Genomics
, vol.6
, pp. 121
-
-
Ruckert, C.1
Koch, D.J.2
Rey, D.A.3
Albersmeier, A.4
-
70
-
-
29344433036
-
Crystal structure of Escherichia coli SufC, an ABC-type ATPase component of the SUF iron-sulfur cluster assembly machinery
-
Kitaoka, S., Wada, K., Hasegawa, Y., Minami, Y. et al., Crystal structure of Escherichia coli SufC, an ABC-type ATPase component of the SUF iron-sulfur cluster assembly machinery. FEBS Lett. 2006, 580, 137-143.
-
(2006)
FEBS Lett
, vol.580
, pp. 137-143
-
-
Kitaoka, S.1
Wada, K.2
Hasegawa, Y.3
Minami, Y.4
-
71
-
-
0031888525
-
-
Pao, S. S., Paulsen, I. T., Saier, M. H., Jr. Major facilitator superfamily. Microbiol. Mol. Biol. Rev. 1998, 62, 1-34.
-
Pao, S. S., Paulsen, I. T., Saier, M. H., Jr. Major facilitator superfamily. Microbiol. Mol. Biol. Rev. 1998, 62, 1-34.
-
-
-
-
72
-
-
63849195623
-
-
Diaz, E, Ed, Caister Academic Press, Norfolk, UK
-
Parales, R. E., Ju, K. S., Rollefson, J. B., Ditty, J. L., in: Diaz, E. (Ed.), Microbial Biodegradation: Genomics and Moelcular Biology, Caister Academic Press, Norfolk, UK 2008, pp. 145-187.
-
(2008)
Microbial Biodegradation: Genomics and Moelcular Biology
, pp. 145-187
-
-
Parales, R.E.1
Ju, K.S.2
Rollefson, J.B.3
Ditty, J.L.4
-
73
-
-
33644873454
-
the Transporter Classification Database for membrane transport protein analyses and information
-
TCDB
-
Saier, M. H., Jr., Tran, C. V., Barabote, R. D., TCDB: the Transporter Classification Database for membrane transport protein analyses and information. Nucleic Acids Res. 2006, 34, D181-D186.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Saier Jr., M.H.1
Tran, C.V.2
Barabote, R.D.3
-
74
-
-
47249147911
-
The GlxR regulon of the amino acid producer Corynebacterium glutamicum: In silico and in vitro detection of DNA binding sites of a global transcription regulator
-
Kohl, T. A., Baumbach, J., Jungwirth, B., Puhler, A., Tauch, A., The GlxR regulon of the amino acid producer Corynebacterium glutamicum: in silico and in vitro detection of DNA binding sites of a global transcription regulator. J. Biotechnol. 2008, 135, 340-350.
-
(2008)
J. Biotechnol
, vol.135
, pp. 340-350
-
-
Kohl, T.A.1
Baumbach, J.2
Jungwirth, B.3
Puhler, A.4
Tauch, A.5
-
75
-
-
33746191929
-
The complete genome of Rhodococcus sp. RHA1 provides insights into a catabolic powerhouse
-
McLeod, M. P., Warren, R. L., Hsiao, W. W., Araki, N. et al., The complete genome of Rhodococcus sp. RHA1 provides insights into a catabolic powerhouse. Proc. Natl. Acad. Sci. USA 2006, 103, 15582-15587.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 15582-15587
-
-
McLeod, M.P.1
Warren, R.L.2
Hsiao, W.W.3
Araki, N.4
-
76
-
-
33748771178
-
Transcriptomic assessment of isozymes in the biphenyl pathway of Rhodococcus sp. strain RHA1
-
Goncalves, E. R., Hara, H., Miyazawa, D., Davies, J. E. et al., Transcriptomic assessment of isozymes in the biphenyl pathway of Rhodococcus sp. strain RHA1. Appl. Environ. Microbiol. 2006, 72, 6183-6193.
-
(2006)
Appl. Environ. Microbiol
, vol.72
, pp. 6183-6193
-
-
Goncalves, E.R.1
Hara, H.2
Miyazawa, D.3
Davies, J.E.4
-
77
-
-
50649124501
-
Functional analyses of Pseudomonas putida benzoate transporters expressed in the yeast Saccharomyces cerevisiae
-
Nishikawa, Y., Yasumi, Y., Noguchi, S., Sakamoto, H., Nikawa, J., Functional analyses of Pseudomonas putida benzoate transporters expressed in the yeast Saccharomyces cerevisiae. Biosci. Biotechnol. Biochem. 2008, 72, 2034-2038.
-
(2008)
Biosci. Biotechnol. Biochem
, vol.72
, pp. 2034-2038
-
-
Nishikawa, Y.1
Yasumi, Y.2
Noguchi, S.3
Sakamoto, H.4
Nikawa, J.5
-
78
-
-
0345689441
-
Identification of an anion-specific channel in the cell wall of the Gram-positive bacterium Corynebacterium glutamicum
-
Costa-Riu, N., Maier, E., Burkovski, A., Kramer, R. et al., Identification of an anion-specific channel in the cell wall of the Gram-positive bacterium Corynebacterium glutamicum. Mol. Microbiol. 2003, 50, 1295-1308.
-
(2003)
Mol. Microbiol
, vol.50
, pp. 1295-1308
-
-
Costa-Riu, N.1
Maier, E.2
Burkovski, A.3
Kramer, R.4
-
79
-
-
0043062677
-
PorA represents the major cell wall channel of the Gram-positive bacterium Corynebacterium glutamicum
-
Costa-Riu, N., Burkovski, A., Kramer, R., Benz, R., PorA represents the major cell wall channel of the Gram-positive bacterium Corynebacterium glutamicum. J. Bacteriol. 2003, 185, 4779-4786.
-
(2003)
J. Bacteriol
, vol.185
, pp. 4779-4786
-
-
Costa-Riu, N.1
Burkovski, A.2
Kramer, R.3
Benz, R.4
-
80
-
-
22144434835
-
-
Hunten, P., Schiffler, B., Lottspeich, F., Benz, R., PorH, a new channel-forming protein present in the cell wall of Corynebacterium efficiens and Corynebacterium callunae. Microbiology 2005, 151, 2429-2438.
-
Hunten, P., Schiffler, B., Lottspeich, F., Benz, R., PorH, a new channel-forming protein present in the cell wall of Corynebacterium efficiens and Corynebacterium callunae. Microbiology 2005, 151, 2429-2438.
-
-
-
-
81
-
-
0003717374
-
-
W.H. Freeman, New York
-
Berg, J. M., Tymoczko, J. L., Stryer, L., Biochemistry, W.H. Freeman, New York 2007.
-
(2007)
Biochemistry
-
-
Berg, J.M.1
Tymoczko, J.L.2
Stryer, L.3
-
82
-
-
0025637263
-
Uptake of glutamate in Corynebacterium glutamicum. 1. Kinetic properties and regulation by internal pH and potassium
-
Kramer, R., Lambert, C., Hoischen, C., Ebbighausen, H., Uptake of glutamate in Corynebacterium glutamicum. 1. Kinetic properties and regulation by internal pH and potassium. Eur. J. Biochem. 1990, 194, 929-935.
-
(1990)
Eur. J. Biochem
, vol.194
, pp. 929-935
-
-
Kramer, R.1
Lambert, C.2
Hoischen, C.3
Ebbighausen, H.4
-
83
-
-
18444409651
-
The McbR repressor modulated by the effector substance S-adenosylhomocysteine controls directly the transcription of a regulon involved in sulphur metabolism of Corynebacterium glutamicum ATCC 13032
-
Rey, D. A., Nentwich, S. S., Koch, D. J., Ruckert, C. et al., The McbR repressor modulated by the effector substance S-adenosylhomocysteine controls directly the transcription of a regulon involved in sulphur metabolism of Corynebacterium glutamicum ATCC 13032. Mol. Microbiol. 2005, 56, 871-887.
-
(2005)
Mol. Microbiol
, vol.56
, pp. 871-887
-
-
Rey, D.A.1
Nentwich, S.S.2
Koch, D.J.3
Ruckert, C.4
-
84
-
-
0036061941
-
Inhibition of Escherichia coli growth by acetic acid: A problem with methionine biosynthesis and homocysteine toxicity
-
Roe, A. J., O'Byrne, C., McLaggan, D., Booth, I. R., Inhibition of Escherichia coli growth by acetic acid: a problem with methionine biosynthesis and homocysteine toxicity. Microbiology 2002, 148, 2215-2222.
-
(2002)
Microbiology
, vol.148
, pp. 2215-2222
-
-
Roe, A.J.1
O'Byrne, C.2
McLaggan, D.3
Booth, I.R.4
-
85
-
-
33846086803
-
DDBJ working on evaluation and classification of bacterial genes in INSDC
-
Sugawara, H., Abe, T., Gojobori, T., Tateno, Y., DDBJ working on evaluation and classification of bacterial genes in INSDC. Nucleic Acids Res. 2007, 35, D13-D15.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Sugawara, H.1
Abe, T.2
Gojobori, T.3
Tateno, Y.4
-
86
-
-
0001857117
-
-
Stackebrandt, E, Goodfellow, M, Eds, John Wiley & Sons, New York
-
Lane, D. J., in: Stackebrandt, E., Goodfellow, M. (Eds.), Nucleic Acid Techniques in Bacterial Systematics, John Wiley & Sons, New York 1991, pp. 115-148.
-
(1991)
Nucleic Acid Techniques in Bacterial Systematics
, pp. 115-148
-
-
Lane, D.J.1
|