메뉴 건너뛰기




Volumn 2, Issue 7, 2012, Pages 1644-1662

Evolution of MHC class I genes in the European badger (Meles meles)

Author keywords

Balancing selection; Birth and death evolution; Concerted evolution; Major histocompatibility complex; Orthology; Trans species polymorphism

Indexed keywords


EID: 84864577968     PISSN: None     EISSN: 20457758     Source Type: Journal    
DOI: 10.1002/ece3.285     Document Type: Article
Times cited : (18)

References (109)
  • 1
    • 33645451300 scopus 로고    scopus 로고
    • Paucity of class I MHC gene heterogeneity between individuals in the endangered Hawaiian monk seal population
    • Aldridge, B. M., L. Bowen, B. R. G. Smith A. Antonelis, F. Gulland, and J. L. Stott. 2006. Paucity of class I MHC gene heterogeneity between individuals in the endangered Hawaiian monk seal population. Immunogenetics 58: 203-215.
    • (2006) Immunogenetics , vol.58 , pp. 203-215
    • Aldridge, B.M.1    Bowen, L.2    Smith, B.R.G.3    Antonelis, A.4    Gulland, F.5    Stott, J.L.6
  • 4
    • 0034897709 scopus 로고    scopus 로고
    • Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution
    • Anisimova, M., J. P. Bielawski, and Z. Yang. 2001. Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution. Mol. Biol. Evol. 18:1585- 1592.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1585-1592
    • Anisimova, M.1    Bielawski, J.P.2    Yang, Z.3
  • 5
    • 0036272936 scopus 로고    scopus 로고
    • Accuracy and power of Bayes prediction of amino acid sites under positive selection
    • Anisimova, M., J. P. Bielawski, and Z. Yang. 2002. Accuracy and power of Bayes prediction of amino acid sites under positive selection. Mol. Biol. Evol. 19:950-958.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 950-958
    • Anisimova, M.1    Bielawski, J.P.2    Yang, Z.3
  • 7
    • 0034097364 scopus 로고    scopus 로고
    • Coccidiosis in the European badger (Meles meles) from England, an epidemiological study
    • Anwar, M., C. Newman, D. Macdonald, M.Woolhouse, and D. Kelly. 2000. Coccidiosis in the European badger (Meles meles) from England, an epidemiological study. Parasitology 120:255-260.
    • (2000) Parasitology , vol.120 , pp. 255-260
    • Anwar, M.1    Newman, C.2    Macdonald, D.3    Woolhouse, M.4    Kelly, D.5
  • 8
    • 0344721480 scopus 로고    scopus 로고
    • Complete sequence and gene map of a human major histocompatibility complex
    • Beck, S., D. Geraghty, H. Inoko, and L. Rowen. 1999. Complete sequence and gene map of a human major histocompatibility complex. Nature 401:921-923.
    • (1999) Nature , vol.401 , pp. 921-923
    • Beck, S.1    Geraghty, D.2    Inoko, H.3    Rowen, L.4
  • 9
    • 0028960764 scopus 로고
    • Evolution of Mhc class II polymorphism: the rise and fall of class II gene function in primates
    • Bergström, T., and U. Gyllensten. 1995. Evolution of Mhc class II polymorphism: the rise and fall of class II gene function in primates. Immunol. Rev. 143:13-31.
    • (1995) Immunol. Rev. , vol.143 , pp. 13-31
    • Bergström, T.1    Gyllensten, U.2
  • 10
    • 0037884727 scopus 로고    scopus 로고
    • MHC studies in nonmodel vertebrates: what have we learned about natural selection in 15 years J
    • Bernatchez, L., and C. Landry. 2003. MHC studies in nonmodel vertebrates: what have we learned about natural selection in 15 years J. Evol. Biol. 16:363-377.
    • (2003) Evol. Biol. , vol.16 , pp. 363-377
    • Bernatchez, L.1    Landry, C.2
  • 11
    • 0032936412 scopus 로고    scopus 로고
    • Building large trees by combining phylogenetic information: a complete phylogeny of the extant Carnivora (Mammalia)
    • Bininda-Emonds, O. R. P., J. L. Gittleman, and A. Purvis. 1999. Building large trees by combining phylogenetic information: a complete phylogeny of the extant Carnivora (Mammalia). Biol. Rev. 74:143-175.
    • (1999) Biol. Rev. , vol.74 , pp. 143-175
    • Bininda-Emonds, O.R.P.1    Gittleman, J.L.2    Purvis, A.3
  • 12
    • 0025324091 scopus 로고
    • Structure, function, and diversity of class I major histocompatibility complex molecules
    • Bjorkman, P. J., and P. Parham. 1990. Structure, function, and diversity of class I major histocompatibility complex molecules. Annu. Rev. Biochem. 59:253-288.
    • (1990) Annu. Rev. Biochem. , vol.59 , pp. 253-288
    • Bjorkman, P.J.1    Parham, P.2
  • 13
    • 0023187442 scopus 로고
    • The foreign antigen binding site and T cell recognition regions of class I histocompatibility antigens
    • Bjorkman, P. J., M. A. Saper, B. Samraoui,W. S. Bennett, J. L. Strominger, and D. C.Wiley. 1987. The foreign antigen binding site and T cell recognition regions of class I histocompatibility antigens. Nature 329:512-518.
    • (1987) Nature , vol.329 , pp. 512-518
    • Bjorkman, P.J.1    Saper, M.A.2    Samraoui, B.3    Bennett, W.S.4    Strominger, J.L.5    Wiley, D.C.6
  • 14
    • 28944453190 scopus 로고    scopus 로고
    • Evolution by recombination and transspecies polymorphism in the MHC class I gene of Xenopus laevis
    • Bos, D. H., and B.Waldman. 2006. Evolution by recombination and transspecies polymorphism in the MHC class I gene of Xenopus laevis. Mol. Biol. Evol. 23:137-143.
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 137-143
    • Bos, D.H.1    Waldman, B.2
  • 15
    • 0036008201 scopus 로고    scopus 로고
    • Gas-chromatographic analyses of the subcaudal gland secretion of the European badger (Meles meles) Part I: chemical differences related to individual parameters
    • Buesching, C. D., J. S.Waterhouse, and D.W. Macdonald. 2002. Gas-chromatographic analyses of the subcaudal gland secretion of the European badger (Meles meles) Part I: chemical differences related to individual parameters. J. Chem. Ecol. 28:41-56.
    • (2002) J. Chem. Ecol. , vol.28 , pp. 41-56
    • Buesching, C.D.1    Waterhouse, J.S.2    Macdonald, D.W.3
  • 16
    • 69849088740 scopus 로고    scopus 로고
    • Seasonal and inter-individual variation in testosterone levels in badgers Meles meles: evidence for the existence of two endocrinological phenotypes
    • Buesching, C. D., M. Heistermann, and D.W. Macdonald. 2009. Seasonal and inter-individual variation in testosterone levels in badgers Meles meles: evidence for the existence of two endocrinological phenotypes. J. Comp. Physiol. A 195:865-871.
    • (2009) J. Comp. Physiol. A , vol.195 , pp. 865-871
    • Buesching, C.D.1    Heistermann, M.2    Macdonald, D.W.3
  • 17
    • 0031011734 scopus 로고    scopus 로고
    • Molecular analysis of six dog leukocyte antigen class I sequences including three complete genes, two truncated genes and one full length processed gene
    • Burnett, R. C., S. A. DeRose, J. L.Wagner, and R. Store. 1997. Molecular analysis of six dog leukocyte antigen class I sequences including three complete genes, two truncated genes and one full length processed gene. Tissue Antigens 49:484-495.
    • (1997) Tissue Antigens , vol.49 , pp. 484-495
    • Burnett, R.C.1    Derose, S.A.2    Wagner, J.L.3    Store, R.4
  • 18
    • 44649104548 scopus 로고    scopus 로고
    • Evolutionary patterns of MHC class II B in owls and their implications for the understanding of avian MHC evolution
    • Burri, R., H. N. Hirzel, N. Salamin, A. Roulin, and L. Fumagalli. 2008. Evolutionary patterns of MHC class II B in owls and their implications for the understanding of avian MHC evolution. Mol. Biol. Evol. 25:1180-1191.
    • (2008) Mol. Biol. Evol. , vol.25 , pp. 1180-1191
    • Burri, R.1    Hirzel, H.N.2    Salamin, N.3    Roulin, A.4    Fumagalli, L.5
  • 19
    • 0030587137 scopus 로고    scopus 로고
    • MHC class I-processed pseudogenes in NewWorld primates provide evidence for rapid turnover of MHC class I genes
    • Cadavid, L. F., A. L. Hughes, and D. I.Watkins. 1996. MHC class I-processed pseudogenes in NewWorld primates provide evidence for rapid turnover of MHC class I genes. J. Immunol. 157:2403-2409.
    • (1996) J. Immunol. , vol.157 , pp. 2403-2409
    • Cadavid, L.F.1    Hughes, A.L.2    Watkins, D.I.3
  • 21
    • 0034986835 scopus 로고    scopus 로고
    • Wildlife disease reservoirs: the epidemiology of Mycobacterium bovis infection in the European badger (Meles meles) and other British mammals
    • Delahay, R. J., C. L. Cheeseman, and R. S. Clifton-Hadley. 2001. Wildlife disease reservoirs: the epidemiology of Mycobacterium bovis infection in the European badger (Meles meles) and other British mammals. Tuberculosis 81:43-49.
    • (2001) Tuberculosis , vol.81 , pp. 43-49
    • Delahay, R.J.1    Cheeseman, C.L.2    Clifton-Hadley, R.S.3
  • 22
    • 37249011825 scopus 로고    scopus 로고
    • Polygynandry, extra-group paternity and multiple-paternity litters in European badger (Meles meles) social groups
    • Dugdale, H. L., D.W. Macdonald, L. C. Pope, and T. Burke. 2007. Polygynandry, extra-group paternity and multiple-paternity litters in European badger (Meles meles) social groups.Mol. Ecol. 16:5294-5306.
    • (2007) Mol. Ecol. , vol.16 , pp. 5294-5306
    • Dugdale, H.L.1    Macdonald, D.W.2    Pope, L.C.3    Burke, T.4
  • 23
    • 82355191724 scopus 로고    scopus 로고
    • Polygynandrous and repeated mounting behaviour in European badgers
    • Dugdale, H. L., A. Griffiths, and D.W. Macdonald. 2011. Polygynandrous and repeated mounting behaviour in European badgers, Meles meles. Anim. Behav. 82:1287-1297.
    • (2011) Meles meles. Anim. Behav. , vol.82 , pp. 1287-1297
    • Dugdale, H.L.1    Griffiths, A.2    Macdonald, D.W.3
  • 24
    • 0037352707 scopus 로고    scopus 로고
    • Requirement for Q226, but not multiple charged residues, in the class I MHC CD loop/D strand for TCR-activated CD8 accessory function
    • Durairaj, M., R. Sharma, J. C. Varghese, and K. P. Kane. 2003. Requirement for Q226, but not multiple charged residues, in the class I MHC CD loop/D strand for TCR-activated CD8 accessory function. Eur. J. Immunol. 33:676-684.
    • (2003) Eur. J. Immunol. , vol.33 , pp. 676-684
    • Durairaj, M.1    Sharma, R.2    Varghese, J.C.3    Kane, K.P.4
  • 26
    • 0023783671 scopus 로고
    • MHC polymorphism pre-dating speciation
    • Figueroa, F., E. Gínther, and J. Klein. 1988. MHC polymorphism pre-dating speciation. Nature 335:265-267.
    • (1988) Nature , vol.335 , pp. 265-267
    • Figueroa, F.1    Gínther, E.2    Klein, J.3
  • 27
    • 0034178257 scopus 로고    scopus 로고
    • Homology: a personal view on some of the problems
    • Fitch,W. M. 2000. Homology: a personal view on some of the problems. Trends Genet. 16:227-231.
    • (2000) Trends Genet , vol.16 , pp. 227-231
    • Fitch, W.M.1
  • 28
    • 19044400807 scopus 로고    scopus 로고
    • Molecular phylogeny of the Carnivora (Mammalia): assessing the impact of increased sampling on resolving enigmatic relationships
    • Flynn, J.J., J. A. Finarelli, S. Zehr, J. Hsu, and M. A. Nedbal. 2005. Molecular phylogeny of the Carnivora (Mammalia): assessing the impact of increased sampling on resolving enigmatic relationships. Syst. Biol. 54:317-337.
    • (2005) Syst. Biol. , vol.54 , pp. 317-337
    • Flynn, J.J.1    Finarelli, J.A.2    Zehr, S.3    Hsu, J.4    Nedbal, M.A.5
  • 29
    • 33748204460 scopus 로고    scopus 로고
    • Molecular phylogeny of the Arctoidea (Carnivora): effect of missing data on supertree and supermatrix analyses of multiple gene datasets
    • Fulton, T. L., and C. Strobeck. 2006. Molecular phylogeny of the Arctoidea (Carnivora): effect of missing data on supertree and supermatrix analyses of multiple gene datasets. Mol. Phylogenet. Evol. 41:165-181.
    • (2006) Mol. Phylogenet. Evol. , vol.41 , pp. 165-181
    • Fulton, T.L.1    Strobeck, C.2
  • 30
    • 46649113515 scopus 로고    scopus 로고
    • Species-specific evolution of class I MHC genes in iguanas (Order:Squamata; Subfamily:Iguaninae)
    • Glaberman, S., and A. Caccone. 2008. Species-specific evolution of class I MHC genes in iguanas (Order:Squamata; Subfamily:Iguaninae). Immunogenetics 60:371-382.
    • (2008) Immunogenetics , vol.60 , pp. 371-382
    • Glaberman, S.1    Caccone, A.2
  • 31
    • 0036241218 scopus 로고    scopus 로고
    • The evolution of the major histocompatibility complex in birds
    • Hess, C. M., and S. V. Edwards. 2002. The evolution of the major histocompatibility complex in birds. Bioscience 52:423-431.
    • (2002) Bioscience , vol.52 , pp. 423-431
    • Hess, C.M.1    Edwards, S.V.2
  • 32
    • 0022156803 scopus 로고
    • Exon shuffling in vivo can generate novel HLA class I molecules
    • Holmes, N., and P. Parham. 1985. Exon shuffling in vivo can generate novel HLA class I molecules. EMBO J. 4:2849-2854.
    • (1985) EMBO J , vol.4 , pp. 2849-2854
    • Holmes, N.1    Parham, P.2
  • 33
    • 0029992560 scopus 로고    scopus 로고
    • Evolution of MHC class I loci in marsupials: characterization of sequences from koala (Phascolarctos cinereus)
    • Houlden, B. A.,W. D. Greville, andW. B. Sherwin. 1996. Evolution of MHC class I loci in marsupials: characterization of sequences from koala (Phascolarctos cinereus). Mol. Biol. Evol. 13:1119-1127.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 1119-1127
    • Houlden, B.A.1    Greville, W.D.2    Sherwin, W.B.3
  • 34
    • 0028909092 scopus 로고
    • Origin and evolution of HLA class I pseudogenes
    • Hughes, A. L.. 1995. Origin and evolution of HLA class I pseudogenes. Mol. Biol. Evol. 12:247-258.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 247-258
    • Hughes, A.L.1
  • 35
    • 0024440685 scopus 로고
    • Evolution of the major histocompatibility complex: independent origin of nonclassical class I genes in different groups of mammals
    • Hughes, A. L., and M. Nei. 1989. Evolution of the major histocompatibility complex: independent origin of nonclassical class I genes in different groups of mammals. Mol. Biol. Evol. 6:559-579.
    • (1989) Mol. Biol. Evol. , vol.6 , pp. 559-579
    • Hughes, A.L.1    Nei, M.2
  • 36
    • 0026575161 scopus 로고
    • Maintenance of MHC polymorphism
    • Hughes, A. L., and M. Nei. 1992. Maintenance of MHC polymorphism. Nature 355:402-403.
    • (1992) Nature , vol.355 , pp. 402-403
    • Hughes, A.L.1    Nei, M.2
  • 37
    • 0032426345 scopus 로고    scopus 로고
    • Natural selection at major histocompatibility complex loci of vertebrates
    • Hughes, A. L., and M. Yeager. 1998. Natural selection at major histocompatibility complex loci of vertebrates. Annu. Rev. Genet. 32:415-434.
    • (1998) Annu. Rev. Genet. , vol.32 , pp. 415-434
    • Hughes, A.L.1    Yeager, M.2
  • 38
    • 30744470609 scopus 로고    scopus 로고
    • Application of phylogenetic networks in evolutionary studies
    • Huson, D. H., and D. Bryant. 2006. Application of phylogenetic networks in evolutionary studies. Mol. Biol. Evol. 23:254-267.
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 254-267
    • Huson, D.H.1    Bryant, D.2
  • 39
    • 0031709963 scopus 로고    scopus 로고
    • Patterns of reticulate evolution for the classical class I and II HLA loci
    • Jakobsen, I. B., S. R.Wilson, and S. Easteal. 1998. Patterns of reticulate evolution for the classical class I and II HLA loci. Immunogenetics 48:312-323.
    • (1998) Immunogenetics , vol.48 , pp. 312-323
    • Jakobsen, I.B.1    Wilson, S.R.2    Easteal, S.3
  • 40
    • 0033778423 scopus 로고    scopus 로고
    • Do infectious diseases drive MHC diversity
    • Jeffrey, K. J., and R. M. Bangham. 2000. Do infectious diseases drive MHC diversity Microbes Infect. 2:1335-1341.
    • (2000) Microbes Infect , vol.2 , pp. 1335-1341
    • Jeffrey, K.J.1    Bangham, R.M.2
  • 41
    • 33747072135 scopus 로고    scopus 로고
    • The orthology of HLA-E and H2-Qa1 is hidden by their concerted evolution with other MHC class I molecules
    • Joly, E., and V. Rouillon. 2006. The orthology of HLA-E and H2-Qa1 is hidden by their concerted evolution with other MHC class I molecules. Biol. Direct 1:2.
    • (2006) Biol. Direct , vol.1 , pp. 2
    • Joly, E.1    Rouillon, V.2
  • 42
    • 0000732090 scopus 로고
    • in H. N. Munro, ed. Mammalian protein metabolism. Academic Press, New York
    • Jukes, T. H., and C. R. Cantor. 1969. Evolution of protein molecules. Pp. 21-132 in H. N. Munro, ed. Mammalian protein metabolism. Academic Press, New York.
    • (1969) Evolution of protein molecules , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 43
    • 0028702002 scopus 로고
    • Evolutionary conservation of MHC class I and class II molecules-different yet the same
    • Kaufman, J., J. Salomonsen, and M. Flajnik. 1994. Evolutionary conservation of MHC class I and class II molecules-different yet the same. Semin. Immunol. 6:411-424.
    • (1994) Semin. Immunol. , vol.6 , pp. 411-424
    • Kaufman, J.1    Salomonsen, J.2    Flajnik, M.3
  • 44
    • 12944320844 scopus 로고    scopus 로고
    • Comparative genomics of major histocompatibility complexes
    • Kelley, J., L.Walter, and J. Trowsdale. 2005. Comparative genomics of major histocompatibility complexes. Immunogenetics 56:683-695.
    • (2005) Immunogenetics , vol.56 , pp. 683-695
    • Kelley, J.1    Walter, L.2    Trowsdale, J.3
  • 46
    • 0034793040 scopus 로고    scopus 로고
    • Nomenclature for factors of the dog major histocompatibility system (DLA)
    • 2000 second report of the ISAG DLA Nomenclature Committee Tissus Antigens
    • Kennedy, L. J., J. M. Angles, A. Barnes, S. D. Carter, O. Francino, J. A. Gerlach, G. M. Happ,W. E. R. Ollier,W. Thomson, and J. L.Wagner. 2001. Nomenclature for factors of the dog major histocompatibility system (DLA), 2000: second report of the ISAG DLA Nomenclature Committee. Tissus Antigens 58:55-70.
    • (2001) , vol.58 , pp. 55-70
    • Kennedy, L.J.1    Angles, J.M.2    Barnes, A.3    Carter, S.D.4    Francino, O.5    Gerlach, J.A.6    Happ, G.M.7    Ollier, W.E.R.8    Thomson, W.9    Wagner, J.L.10
  • 47
    • 0023616527 scopus 로고
    • Origin of major histocompatibility complex polymorphism:the trans-species hypothesis
    • Klein, J. 1987. Origin of major histocompatibility complex polymorphism:the trans-species hypothesis. Hum. Immunol. 19:155-162.
    • (1987) Hum. Immunol. , vol.19 , pp. 155-162
    • Klein, J.1
  • 49
    • 34548396076 scopus 로고    scopus 로고
    • MHC, TSP, and the origin of species: from immunogenetics to evolutionary genetics
    • Klein J., A. Sato, and N. Nikolaidis 2007. MHC, TSP, and the origin of species: from immunogenetics to evolutionary genetics. Annu. Rev. Genet. 41:281-304.
    • (2007) Annu. Rev. Genet. , vol.41 , pp. 281-304
    • Klein, J.1    Sato, A.2    Nikolaidis, N.3
  • 50
    • 0021919448 scopus 로고
    • Cloning and complete sequence of an HLA-A2 gene: analysis of two HLA-A alleles at the nucleotide level
    • Koller, B. H., and H. T. Orr. 1985. Cloning and complete sequence of an HLA-A2 gene: analysis of two HLA-A alleles at the nucleotide level. J. Immunol. 134:2727-2733.
    • (1985) J. Immunol. , vol.134 , pp. 2727-2733
    • Koller, B.H.1    Orr, H.T.2
  • 51
    • 0028987317 scopus 로고
    • Immune response to Mycobacterium bovis bacille Calmette Guerin infection in major histocompatibility complex class I- and II-deficient knock-out mice: contribution of CD4 and CD8 T cells to acquired resistance
    • Ladel, C. H., S. Daugelat, and S. H. E. Kaufmann. 1995. Immune response to Mycobacterium bovis bacille Calmette Guerin infection in major histocompatibility complex class I- and II-deficient knock-out mice: contribution of CD4 and CD8 T cells to acquired resistance. Eur. J. Immunol. 25:377-384.
    • (1995) Eur. J. Immunol. , vol.25 , pp. 377-384
    • Ladel, C.H.1    Daugelat, S.2    Kaufmann, S.H.E.3
  • 52
    • 79951918984 scopus 로고    scopus 로고
    • Evidence for a role of the host-specific flea (Paraceras melis) in the transmission of Trypanosoma (Megatrypanum) pestanai to the European badger
    • Lizundia, R., C.Newman, C. D. Buesching, D. Ngugi, D. Blake, Y. W. Sin, D. W. Macdonald, A. Wilson, and D. McKeever. 2011. Evidence for a role of the host-specific flea (Paraceras melis) in the transmission of Trypanosoma (Megatrypanum) pestanai to the European badger. PLoS ONE 6:e16977.
    • (2011) PLoS ONE , vol.6
    • Lizundia, R.1    Newman, C.2    Buesching, C.D.3    Ngugi, D.4    Blake, D.5    Sin, Y.W.6    Macdonald, D.W.7    Wilson, A.8    Mckeever, D.9
  • 53
    • 0034968862 scopus 로고    scopus 로고
    • Roles of lineage sorting and phylogenetic relationship in the genetic diversity at the self-incompatibility locus of Solanaceae
    • Lu, Y. 2001. Roles of lineage sorting and phylogenetic relationship in the genetic diversity at the self-incompatibility locus of Solanaceae. Heredity 86:195-205.
    • (2001) Heredity , vol.86 , pp. 195-205
    • Lu, Y.1
  • 54
    • 0036159655 scopus 로고    scopus 로고
    • Population dynamics of badgers (Meles meles) in Oxfordshire, UK: numbers, density and cohort life histories, and a possible role of climate change in population growth
    • Macdonald, D.W., and C. Newman. 2002. Population dynamics of badgers (Meles meles) in Oxfordshire, UK: numbers, density and cohort life histories, and a possible role of climate change in population growth. J. Zool. 256:121-138.
    • (2002) J. Zool. , vol.256 , pp. 121-138
    • Macdonald, D.W.1    Newman, C.2
  • 55
    • 0033480644 scopus 로고    scopus 로고
    • Inter-annual differences in the age-related prevalences of Babesia and Trypanosoma parasites of European badgers (Meles meles)
    • Macdonald, D.W., M. Anwar, C. Newman, R.Woodroffe, and P. J. Johnson. 1999. Inter-annual differences in the age-related prevalences of Babesia and Trypanosoma parasites of European badgers (Meles meles). J. Zool. 247:65-70.
    • (1999) J. Zool. , vol.247 , pp. 65-70
    • Macdonald, D.W.1    Anwar, M.2    Newman, C.3    Woodroffe, R.4    Johnson, P.J.5
  • 56
    • 4043167840 scopus 로고    scopus 로고
    • The distribution of Eurasian badger, Meles meles, setts in a high density area: field observations contradict the sett dispersion hypothesis
    • Macdonald, D.W., C. Newman, J. Dean, C. D. Buesching, and P. J. Johnson. 2004. The distribution of Eurasian badger, Meles meles, setts in a high density area: field observations contradict the sett dispersion hypothesis. Oikos 106:295-307.
    • (2004) Oikos , vol.106 , pp. 295-307
    • Macdonald, D.W.1    Newman, C.2    Dean, J.3    Buesching, C.D.4    Johnson, P.J.5
  • 57
    • 73549085170 scopus 로고    scopus 로고
    • An analysis of Eurasian badger (Meles meles) population dynamics: implications for regulatory mechanisms
    • Macdonald, D.W., C. Newman, P. M. Nouvellet, and C. D. Buesching. 2009. An analysis of Eurasian badger (Meles meles) population dynamics: implications for regulatory mechanisms. J. Mammal. 90:1392-1403.
    • (2009) J. Mammal. , vol.90 , pp. 1392-1403
    • Macdonald, D.W.1    Newman, C.2    Nouvellet, P.M.3    Buesching, C.D.4
  • 58
    • 33644606488 scopus 로고    scopus 로고
    • Inferring phylogeny despite incomplete lineage sorting
    • Maddison,W. P., and L. L. Knowle. 2006. Inferring phylogeny despite incomplete lineage sorting. Syst. Biol. 55:21-30.
    • (2006) Syst. Biol. , vol.55 , pp. 21-30
    • Maddison, W.P.1    Knowle, L.L.2
  • 59
    • 0033824415 scopus 로고    scopus 로고
    • RDP: detection of recombination amongst aligned sequences
    • Martin, D., and E. Rybicki. 2000. RDP: detection of recombination amongst aligned sequences. Bioinformatics 16:562-563.
    • (2000) Bioinformatics , vol.16 , pp. 562-563
    • Martin, D.1    Rybicki, E.2
  • 60
    • 13144283628 scopus 로고    scopus 로고
    • A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints
    • Martin, D. P.,D. Posada, K. A. Crandall, and C. Williamson. 2005. A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints. AIDS Res. Hum. Retrovir. 21:98-102.
    • (2005) AIDS Res. Hum. Retrovir. , vol.21 , pp. 98-102
    • Martin, D.P.1    Posada, D.2    Crandall, K.A.3    Williamson, C.4
  • 61
  • 63
    • 0027421334 scopus 로고
    • Resolution of the HLA-DRB6 puzzle: a case of grafting a de novo generated exon on an existing gene
    • USA
    • Mayer,W. E., C. O'huigin, and J. Klein. 1993. Resolution of the HLA-DRB6 puzzle: a case of grafting a de novo generated exon on an existing gene. Proc. Natl. Acad. Sci. USA 90:10720-10724.
    • (1993) Proc. Natl. Acad. Sci. , vol.90 , pp. 10720-10724
    • Mayer, W.E.1    O'huigin, C.2    Klein, J.3
  • 65
    • 50449088155 scopus 로고    scopus 로고
    • A common sequence motif associated with recombination hot spots and genome instability in humans
    • Myers, S., C. Freeman, A. Auton, P. Donnelly, and G. McVean. 2008. A common sequence motif associated with recombination hot spots and genome instability in humans. Nat. Genet. 40:1124-1129.
    • (2008) Nat. Genet. , vol.40 , pp. 1124-1129
    • Myers, S.1    Freeman, C.2    Auton, A.3    Donnelly, P.4    Mcvean, G.5
  • 67
    • 0022507362 scopus 로고
    • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
    • Nei, M., and T. Gojobori. 1986. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 3:418-426.
    • (1986) Mol. Biol. Evol. , vol.3 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 68
    • 27944477670 scopus 로고    scopus 로고
    • Concerted and birth-and-death evolution of multigene families
    • Nei, M., and A. P. Rooney. 2005. Concerted and birth-and-death evolution of multigene families. Annu. Rev. Genet. 39:121- 152.
    • (2005) Annu. Rev. Genet. , vol.39 , pp. 121-152
    • Nei, M.1    Rooney, A.P.2
  • 69
    • 0030791307 scopus 로고    scopus 로고
    • Evolution by the birth-and-death process in multigene families of the vertebrate immune system
    • USA
    • Nei, M., X. Gu, and T. Sitnikova. 1997. Evolution by the birth-and-death process in multigene families of the vertebrate immune system. Proc. Natl. Acad. Sci. USA 94:7799-7806.
    • (1997) Proc. Natl. Acad. Sci. , vol.94 , pp. 7799-7806
    • Nei, M.1    Gu, X.2    Sitnikova, T.3
  • 70
    • 0034914631 scopus 로고    scopus 로고
    • Coccidiosis in the European badger
    • inWytham Woods: infection and consequences for growth and survival. Parasitology
    • Newman, C., D.W. Macdonald, and M. A. Anwar. 2001. Coccidiosis in the European badger, Meles meles inWytham Woods: infection and consequences for growth and survival. Parasitology 123:133-142.
    • (2001) Meles meles , vol.123 , pp. 133-142
    • Newman, C.1    Macdonald, D.W.2    Anwar, M.A.3
  • 71
    • 84862960376 scopus 로고    scopus 로고
    • Contrasting sociality in two widespread, generalist, mustelid genera
    • Mamm. Study
    • Newman, C., Y.-B. Zhou, C.D. Buesching, Y. Kaneko, and D. W. Macdonald. 2011. Contrasting sociality in two widespread, generalist, mustelid genera, Meles and Martes. Mamm. Study 36:169-188.
    • (2011) Meles and Martes , vol.36 , pp. 169-188
    • Newman, C.1    Zhou, Y.-B.2    Buesching, C.D.3    Kaneko, Y.4    Macdonald, D.W.5
  • 72
    • 78650317041 scopus 로고    scopus 로고
    • Mouthing off about developmental stress: individuality of palate marking in the European badger and its relationship with juvenile parasitoses
    • Nouvellet, P., C. D. Buesching, H. L. Dugdale, C. Newman, and D.W. Macdonald. 2010. Mouthing off about developmental stress: individuality of palate marking in the European badger and its relationship with juvenile parasitoses. J. Zool. 283:52-62.
    • (2010) J. Zool. , vol.283 , pp. 52-62
    • Nouvellet, P.1    Buesching, C.D.2    Dugdale, H.L.3    Newman, C.4    Macdonald, D.W.5
  • 73
    • 0025949290 scopus 로고
    • Role of diversifying selection and gene conversion in evolution of major histocompatibility complex loci
    • Ohta, T. 1991. Role of diversifying selection and gene conversion in evolution of major histocompatibility complex loci. Proc. Natl. Acad. Sci. USA 88:6716-6720.
    • (1991) Proc. Natl. Acad. Sci. USA , vol.88 , pp. 6716-6720
    • Ohta, T.1
  • 75
    • 0033590220 scopus 로고    scopus 로고
    • Possible emergence of new geminiviruses by frequent recombination
    • Padidam, M., S. Sawyer, and C. M. Fauquet. 1999. Possible emergence of new geminiviruses by frequent recombination. Virology 265:218-225.
    • (1999) Virology , vol.265 , pp. 218-225
    • Padidam, M.1    Sawyer, S.2    Fauquet, C.M.3
  • 76
    • 42449125173 scopus 로고    scopus 로고
    • Molecular characterization of major histocompatibility complex class I genes from the giant panda (Ailuropoda melanoleuca)
    • Pan, H.-J., Q.-H.Wan, and S.-G. Fang. 2008. Molecular characterization of major histocompatibility complex class I genes from the giant panda (Ailuropoda melanoleuca). Immunogenetics 60:185-193.
    • (2008) Immunogenetics , vol.60 , pp. 185-193
    • Pan, H.-J.1    Wan, Q.-H.2    Fang, S.-G.3
  • 77
    • 0030006049 scopus 로고    scopus 로고
    • Population biology of antigen presentation by MHC class I molecules
    • Parham, P., and T. Ohta. 1996. Population biology of antigen presentation by MHC class I molecules. Science 272:67-74.
    • (1996) Science , vol.272 , pp. 67-74
    • Parham, P.1    Ohta, T.2
  • 78
    • 0030152620 scopus 로고    scopus 로고
    • A point mutation in HLA-A0201 results in failure to bind the TAP complex and to present virus-derived peptides to CTL
    • Peace-Brewer, A. L., L. G. Tussey, M. Matsui, G. Li, D. G. Quinn, and J. A. Frelinger. 1996. A point mutation in HLA-A0201 results in failure to bind the TAP complex and to present virus-derived peptides to CTL. Immunity 4:505-514.
    • (1996) Immunity , vol.4 , pp. 505-514
    • Peace-Brewer, A.L.1    Tussey, L.G.2    Matsui, M.3    Li, G.4    Quinn, D.G.5    Frelinger, J.A.6
  • 79
    • 0033036460 scopus 로고    scopus 로고
    • The evolution of mating preferences and major histocompatibility complex genes
    • Penn, D. J., andW. K. Potts. 1999. The evolution of mating preferences and major histocompatibility complex genes. Am. Nat. 153:145-164.
    • (1999) Am. Nat. , vol.153 , pp. 145-164
    • Penn, D.J.1    Potts, W.K.2
  • 80
    • 0037143716 scopus 로고    scopus 로고
    • MHC heterozygosity confers a selective advantage against multiple-strain infections
    • Penn, D. J., K. Damjanovich, andW. K. Potts. 2002. MHC heterozygosity confers a selective advantage against multiple-strain infections. Proc. Natl. Acad. Sci. USA 99:11260-11264.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 11260-11264
    • Penn, D.J.1    Damjanovich, K.2    Potts, W.K.3
  • 81
    • 33644998297 scopus 로고    scopus 로고
    • The evolutionary ecology of the major histocompatibility complex
    • Piertney, S. B., and M. K. Oliver. 2006. The evolutionary ecology of the major histocompatibility complex. Heredity 96:7-21.
    • (2006) Heredity , vol.96 , pp. 7-21
    • Piertney, S.B.1    Oliver, M.K.2
  • 82
    • 0037387390 scopus 로고    scopus 로고
    • Birth-and-death evolution in primate MHC class I genes: divergence time estimates
    • Piontkivska, H., and M. Nei. 2003. Birth-and-death evolution in primate MHC class I genes: divergence time estimates. Mol. Biol. Evol. 20:601-609.
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 601-609
    • Piontkivska, H.1    Nei, M.2
  • 84
    • 0034527213 scopus 로고    scopus 로고
    • Evolution of balanced genetic polymorphism
    • Richman, A. 2000. Evolution of balanced genetic polymorphism. Mol. Ecol. 9:1953-1963
    • (2000) Mol. Ecol. , vol.9 , pp. 1953-1963
    • Richman, A.1
  • 85
    • 0038725529 scopus 로고    scopus 로고
    • Relative roles of mutation and recombination in generating allelic polymorphism at an MHC class II locus in Peromyscus maniculatus
    • Richman, A., L. Herrera, D. Nash, and M. Schierup. 2003. Relative roles of mutation and recombination in generating allelic polymorphism at an MHC class II locus in Peromyscus maniculatus. Genet. Res. 82:89-99.
    • (2003) Genet. Res. , vol.82 , pp. 89-99
    • Richman, A.1    Herrera, L.2    Nash, D.3    Schierup, M.4
  • 86
    • 83355176321 scopus 로고    scopus 로고
    • Culling-induced changes in badger (Meles meles) behaviour, social organisation and the epidemiology of bovine tuberculosis
    • doi:28910.21371/journal.pone.0028904
    • Riordan, P., R. J. Delahay, C. Cheeseman, P. J. Johnson, and D.W. Macdonald. 2011. Culling-induced changes in badger (Meles meles) behaviour, social organisation and the epidemiology of bovine tuberculosis. PLoS ONE 6:e28904. doi: 28910.21371/journal.pone.0028904
    • (2011) PLoS ONE , vol.6
    • Riordan, P.1    Delahay, R.J.2    Cheeseman, C.3    Johnson, P.J.4    Macdonald, D.W.5
  • 87
    • 20644439105 scopus 로고    scopus 로고
    • MHC class Ib molecules bridge innate and acquired immunity
    • Rodgers, J. R., and R. G. Cook. 2005. MHC class Ib molecules bridge innate and acquired immunity. Nat. Rev. Immunol. 5:459-471.
    • (2005) Nat. Rev. Immunol. , vol.5 , pp. 459-471
    • Rodgers, J.R.1    Cook, R.G.2
  • 88
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3 Bayesian phylogenetic inference under mixed models
    • Ronquist, F., and J. P. Huelsenbeck. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 89
    • 84890286748 scopus 로고    scopus 로고
    • MrBayes v. 3.1 Manual. Available at
    • Ronquist, F., J. P. Huelsenbeck, and P. van-der-Mark. 2005. MrBayes v. 3.1 Manual. Available at: http://mrbayes.sourceforge.net/manual.php
    • (2005)
    • Ronquist, F.1    Huelsenbeck, J.P.2    Van-Der-Mark, P.3
  • 90
    • 11144248493 scopus 로고    scopus 로고
    • Spatial structure and land-cover use in a low-density Mediterranean population of Eurasian badgers
    • Rosalino, L. M., D.W. Macdonald, and M.Santos-Reis, 2004. Spatial structure and land-cover use in a low-density Mediterranean population of Eurasian badgers. Can. J. Zool. 82:1493-1502.
    • (2004) Can. J. Zool. , vol.82 , pp. 1493-1502
    • Rosalino, L.M.1    Macdonald, D.W.2    Santos-Reis, M.3
  • 91
    • 33745713985 scopus 로고    scopus 로고
    • A survey of helminth infection in Eurasian badgers (Meles meles) in relation to their foraging behaviour in a Mediterranean environment in southwest Portugal
    • Rosalino, L. M., J. Torres, and M. Santos-Reis. 2006. A survey of helminth infection in Eurasian badgers (Meles meles) in relation to their foraging behaviour in a Mediterranean environment in southwest Portugal. Eur. J.Wildl. Res. 52:202-206.
    • (2006) Eur. J. Wildl. Res. , vol.52 , pp. 202-206
    • Rosalino, L.M.1    Torres, J.2    Santos-Reis, M.3
  • 92
    • 0347513220 scopus 로고    scopus 로고
    • DnaSP DNA polymorphism analyses by the coalescent and other methods
    • Rozas, J., J. Śanchez-DelBarrio, X. Messenguer, and R. Rozas. 2003. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19:2469-2497.
    • (2003) Bioinformatics , vol.19 , pp. 2469-2497
    • Rozas, J.1    Sánchez-DelBarrio, J.2    Messenguer, X.3    Rozas, R.4
  • 95
    • 84860823570 scopus 로고    scopus 로고
    • MHC class II genes in the European badger (Meles meles): characterization, patterns of variation, and transcription analysis
    • Sin, Y.W., H. L. Dugdale, C. Newman,D.W.Macdonald, and T. Burke. 2012. MHC class II genes in the European badger (Meles meles): characterization, patterns of variation, and transcription analysis. Immunogenetics 64:313-327.
    • (2012) Immunogenetics , vol.64 , pp. 313-327
    • Sin, Y.W.1    Dugdale, H.L.2    Newman, C.3    Macdonald, D.W.4    Burke, T.5
  • 96
    • 0026708873 scopus 로고
    • Analyzing the mosaic structure of genes
    • Smith, J. M.. 1992. Analyzing the mosaic structure of genes. J. Mol. Evol. 34:126-129.
    • (1992) J. Mol. Evol. , vol.34 , pp. 126-129
    • Smith, J.M.1
  • 97
    • 0020643477 scopus 로고
    • T cell subsets and the recognition of MHC class
    • Swain, S. L.. 1983. T cell subsets and the recognition of MHC class. Immunol. Rev. 74:129-142.
    • (1983) Immunol. Rev. , vol.74 , pp. 129-142
    • Swain, S.L.1
  • 98
    • 0034068253 scopus 로고    scopus 로고
    • Origins and divergence times of mammalian class II MHC gene clusters
    • Takahashi, K., A. P. Rooney, and M. Nei. 2000. Origins and divergence times of mammalian class II MHC gene clusters. J. Hered. 91:198-204.
    • (2000) J. Hered. , vol.91 , pp. 198-204
    • Takahashi, K.1    Rooney, A.P.2    Nei, M.3
  • 99
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4
    • Tamura, K., J. Dudley, M. Nei, and S. Kumar. 2007. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:1596-1599.
    • (2007) 0. Mol. Biol. Evol. , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 100
    • 1642354555 scopus 로고    scopus 로고
    • The evolution and maintenance of delayed implantation in the Mustelidae (Mammalia:Carnivora)
    • Thom, M. D., D. D. P. Johnson, and D.W. Macdonald. 2004. The evolution and maintenance of delayed implantation in the Mustelidae (Mammalia:Carnivora). Evolution 58: 175-183.
    • (2004) Evolution , vol.58 , pp. 175-183
    • Thom, M.D.1    Johnson, D.D.P.2    Macdonald, D.W.3
  • 101
  • 102
    • 0347478283 scopus 로고    scopus 로고
    • Molecular organization of the canine major histocompatibility complex
    • Wagner, J. L.. 2003. Molecular organization of the canine major histocompatibility complex. J. Hered. 94:23-26.
    • (2003) J. Hered. , vol.94 , pp. 23-26
    • Wagner, J.L.1
  • 103
    • 0032904247 scopus 로고    scopus 로고
    • Organization of the canine major histocompatibility complex: current perspectives
    • Wagner, J. L., R. C. Burnett, and R. Storb. 1999. Organization of the canine major histocompatibility complex: current perspectives. J. Hered. 90:35-38.
    • (1999) J. Hered. , vol.90 , pp. 35-38
    • Wagner, J.L.1    Burnett, R.C.2    Storb, R.3
  • 104
    • 33645216107 scopus 로고    scopus 로고
    • Female receptivity, embryonic diapause, and superfetation in the European badger (Meles meles): implications for the reproductive tactics of males and females
    • Yamaguchi, N., H. L. Dugdale, and D.W. Macdonald. 2006. Female receptivity, embryonic diapause, and superfetation in the European badger (Meles meles): implications for the reproductive tactics of males and females. Q. Rev. Biol. 81:33-48.
    • (2006) Q. Rev. Biol. , vol.81 , pp. 33-48
    • Yamaguchi, N.1    Dugdale, H.L.2    Macdonald, D.W.3
  • 105
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4 phylogenetic analysis by maximum likelihood
    • Yang, Z.. 2007. PAML 4: phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 24:1586-1591.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 106
    • 0034097381 scopus 로고    scopus 로고
    • Codon-substitution models for heterogeneous selection pressure at amino acid sites
    • Yang, Z., R. N. Nielsen Goldman, and A.-M. K. Pedersen. 2000. Codon-substitution models for heterogeneous selection pressure at amino acid sites. Genetics 155: 431-449.
    • (2000) Genetics , vol.155 , pp. 431-449
    • Yang, Z.1    Nielsen Goldman, R.N.2    Pedersen, A.-M.3
  • 107
    • 16344378246 scopus 로고    scopus 로고
    • Bayes empirical Bayes inference of amino acid sites under positive selection
    • Yang, Z.,W. S.W.Wong, and R. Nielsen. 2005. Bayes empirical Bayes inference of amino acid sites under positive selection. Mol. Biol. Evol. 22:1107-1118.
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 1107-1118
    • Yang, Z.1    Wong, W.S.W.2    Nielsen, R.3
  • 108
    • 34548402524 scopus 로고    scopus 로고
    • Comparative genomic structure of human, dog, and cat MHC: HLA, DLA, and FLA
    • Yuhki, N., T. Beck, R. Stephens, B. Neelam, and S. J. O'Brien. 2007. Comparative genomic structure of human, dog, and cat MHC: HLA, DLA, and FLA. J. Hered. 98:390-399.
    • (2007) J. Hered. , vol.98 , pp. 390-399
    • Yuhki, N.1    Beck, T.2    Stephens, R.3    Neelam, B.4    O'Brien, S.J.5
  • 109
    • 0031786949 scopus 로고    scopus 로고
    • Characterization of a harbor seal class I major histocompatability complex cDNA clone
    • Zhong, J. F., J. T. Harvey, and J. T. Boothby. 1998. Characterization of a harbor seal class I major histocompatability complex cDNA clone. Immunogenetics 48:422-424.
    • (1998) Immunogenetics , vol.48 , pp. 422-424
    • Zhong, J.F.1    Harvey, J.T.2    Boothby, J.T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.