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Volumn 40, Issue 13, 2012, Pages 6001-6015

Erratum: Identification of differentially expressed non-coding RNAs in embryonic stem cell neural differentiation (Nucleic Acids Research (2012) 40 (6001-6015) DOI:10.1093/nar/gks311);Identification of differentially expressed non-coding RNAs in embryonic stem cell neural differentiation

Author keywords

[No Author keywords available]

Indexed keywords

INTERRNA; INTRARNA; MICRORNA; SMALL NUCLEOLAR RNA; UNCLASSIFIED DRUG; UNTRANSLATED RNA;

EID: 84864429103     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gks922     Document Type: Erratum
Times cited : (46)

References (80)
  • 3
    • 72449129174 scopus 로고    scopus 로고
    • A global view of genomic information-moving beyond the gene and the master regulator
    • Mattick, J.S., Taft, R.J. and Faulkner, G.J. (2009) A global view of genomic information-moving beyond the gene and the master regulator. Trends Genet., 26, 21-28.
    • (2009) Trends Genet. , vol.26 , pp. 21-28
    • Mattick, J.S.1    Taft, R.J.2    Faulkner, G.J.3
  • 4
    • 77952905505 scopus 로고    scopus 로고
    • Most 'dark matter' transcripts are associated with known genes
    • van Bakel, H., Nislow, C., Blencowe, B.J. and Hughes, T.R. (2010) Most 'dark matter' transcripts are associated with known genes. PLoS Biol., 8, e1000371.
    • (2010) PLoS Biol , vol.8
    • Van Bakel, H.1    Nislow, C.2    Blencowe, B.J.3    Hughes, T.R.4
  • 5
    • 33646883455 scopus 로고    scopus 로고
    • The principles of guiding by RNA: Chimeric RNA-protein enzymes
    • Hüttenhofer, A. and Schattner, P. (2006) The principles of guiding by RNA: chimeric RNA-protein enzymes. Nat. Rev. Genet., 7, 475-482.
    • (2006) Nat. Rev. Genet. , vol.7 , pp. 475-482
    • Hüttenhofer, A.1    Schattner, P.2
  • 6
    • 39149139307 scopus 로고    scopus 로고
    • Small RNAs: Keeping stem cells in line
    • Stadler, B.M. and Ruohola-Baker, H. (2008) Small RNAs: keeping stem cells in line. Cell, 132, 563-566.
    • (2008) Cell , vol.132 , pp. 563-566
    • Stadler, B.M.1    Ruohola-Baker, H.2
  • 7
    • 77955049511 scopus 로고    scopus 로고
    • Emerging roles of micrornas in the control of embryonic stem cells and the generation of induced pluripotent stem cells
    • Mallanna, S.K. and Rizzino, A. (2010) Emerging roles of microRNAs in the control of embryonic stem cells and the generation of induced pluripotent stem cells. Dev. Biol., 344, 16-25.
    • (2010) Dev. Biol. , vol.344 , pp. 16-25
    • Mallanna, S.K.1    Rizzino, A.2
  • 8
    • 54349104464 scopus 로고    scopus 로고
    • Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs
    • Babiarz, J.E., Ruby, J.G., Wang, Y., Bartel, D.P. and Blelloch, R. (2008) Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs. Genes Dev., 22, 2773-2785.
    • (2008) Genes Dev. , vol.22 , pp. 2773-2785
    • Babiarz, J.E.1    Ruby, J.G.2    Wang, Y.3    Bartel, D.P.4    Blelloch, R.5
  • 9
    • 4644309196 scopus 로고    scopus 로고
    • The functions of animal micrornas
    • Ambros, V. (2004) The functions of animal microRNAs. Nature, 431, 350-355.
    • (2004) Nature , vol.431 , pp. 350-355
    • Ambros, V.1
  • 10
    • 33644756685 scopus 로고    scopus 로고
    • Micro RNAs in animal development
    • Plasterk, R.H. (2006) Micro RNAs in animal development. Cell, 124, 877-881.
    • (2006) Cell , vol.124 , pp. 877-881
    • Plasterk, R.H.1
  • 11
    • 0042442335 scopus 로고    scopus 로고
    • Embryonic stem cell-specific micrornas
    • Houbaviy, H.B., Murray, M.F. and Sharp, P.A. (2003) Embryonic stem cell-specific microRNAs. Dev. Cell, 5, 351-358.
    • (2003) Dev. Cell , vol.5 , pp. 351-358
    • Houbaviy, H.B.1    Murray, M.F.2    Sharp, P.A.3
  • 14
    • 67349149082 scopus 로고    scopus 로고
    • Microrna-145 regulates OCT4, SOX2, and KLF4 and represses pluripotency in human embryonic stem cells
    • Xu, N., Papagiannakopoulos, T., Pan, G., Thomson, J.A. and Kosik, K.S. (2009) MicroRNA-145 regulates OCT4, SOX2, and KLF4 and represses pluripotency in human embryonic stem cells. Cell, 137, 647-658.
    • (2009) Cell , vol.137 , pp. 647-658
    • Xu, N.1    Papagiannakopoulos, T.2    Pan, G.3    Thomson, J.A.4    Kosik, K.S.5
  • 15
    • 48649103982 scopus 로고    scopus 로고
    • A feedback loop comprising lin-28 and let-7 controls pre-let-7 maturation during neural stem-cell commitment
    • Rybak, A., Fuchs, H., Smirnova, L., Brandt, C., Pohl, E.E., Nitsch, R. and Wulczyn, F.G. (2008) A feedback loop comprising lin-28 and let-7 controls pre-let-7 maturation during neural stem-cell commitment. Nat. Cell. Biol., 10, 987-993.
    • (2008) Nat. Cell. Biol. , vol.10 , pp. 987-993
    • Rybak, A.1    Fuchs, H.2    Smirnova, L.3    Brandt, C.4    Pohl, E.E.5    Nitsch, R.6    Wulczyn, F.G.7
  • 17
    • 34547116839 scopus 로고    scopus 로고
    • Defining embryonic stem cell identity using differentiation-related micrornas and their potential targets
    • Chen, C., Ridzon, D., Lee, C.T., Blake, J., Sun, Y. and Strauss, W.M. (2007) Defining embryonic stem cell identity using differentiation-related microRNAs and their potential targets. Mamm. Genome, 18, 316-327.
    • (2007) Mamm. Genome , vol.18 , pp. 316-327
    • Chen, C.1    Ridzon, D.2    Lee, C.T.3    Blake, J.4    Sun, Y.5    Strauss, W.M.6
  • 20
    • 33847323881 scopus 로고    scopus 로고
    • Dgcr8 is essential for microrna biogenesis and silencing of embryonic stem cell self-renewal
    • Wang, Y., Medvid, R., Melton, C., Jaenisch, R. and Blelloch, R. (2007) DGCR8 is essential for microRNA biogenesis and silencing of embryonic stem cell self-renewal. Nat. Genet., 39, 380-385.
    • (2007) Nat. Genet. , vol.39 , pp. 380-385
    • Wang, Y.1    Medvid, R.2    Melton, C.3    Jaenisch, R.4    Blelloch, R.5
  • 22
    • 79551677003 scopus 로고    scopus 로고
    • Cdna library generation from ribonucleoprotein particles
    • Rederstorff, M. and Huttenhofer, A. (2011) cDNA library generation from ribonucleoprotein particles. Nat. Protoc., 6, 166-174.
    • (2011) Nat. Protoc. , vol.6 , pp. 166-174
    • Rederstorff, M.1    Huttenhofer, A.2
  • 25
    • 0034044317 scopus 로고    scopus 로고
    • Efficient generation of midbrain and hindbrain neurons from mouse embryonic stem cells
    • Lee, S.H., Lumelsky, N., Studer, L., Auerbach, J.M. and McKay, R.D. (2000) Efficient generation of midbrain and hindbrain neurons from mouse embryonic stem cells. Nat. Biotechnol., 18, 675-679.
    • (2000) Nat. Biotechnol. , vol.18 , pp. 675-679
    • Lee, S.H.1    Lumelsky, N.2    Studer, L.3    Auerbach, J.M.4    McKay, R.D.5
  • 26
    • 0037313844 scopus 로고    scopus 로고
    • Conversion of embryonic stem cells into neuroectodermal precursors in adherent monoculture
    • Ying, Q.L., Stavridis, M., Griffiths, D., Li, M. and Smith, A. (2003) Conversion of embryonic stem cells into neuroectodermal precursors in adherent monoculture. Nat. Biotechnol., 21, 183-186.
    • (2003) Nat. Biotechnol. , vol.21 , pp. 183-186
    • Ying, Q.L.1    Stavridis, M.2    Griffiths, D.3    Li, M.4    Smith, A.5
  • 27
    • 84860186059 scopus 로고    scopus 로고
    • Pharmacological modulation of the hedgehog pathway differentially affects dorsal/ventral patterning in mouse and human embryonic stem cell models of telencephalic development
    • Epub ahead of print
    • Nat, R., Salti, A., Suciu, L., Ström, S. and Dechant, G. (2012) Pharmacological modulation of the hedgehog pathway differentially affects dorsal/ventral patterning in mouse and human embryonic stem cell models of telencephalic development. Stem Cells Dev Epub ahead of print.
    • (2012) Stem Cells Dev
    • Nat, R.1    Salti, A.2    Suciu, L.3    Ström, S.4    Dechant, G.5
  • 28
    • 84861399262 scopus 로고    scopus 로고
    • Revealing stable processing products from ribosome-associated small RNAs by deep-sequencing data analysis
    • Zywicki, M., Bakowska-Zywicka, K. and Polacek, N. (2012) Revealing stable processing products from ribosome-associated small RNAs by deep-sequencing data analysis. Nucleic Acids Res., 40, 4013-4024.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 4013-4024
    • Zywicki, M.1    Bakowska-Zywicka, K.2    Polacek, N.3
  • 29
    • 77951770756 scopus 로고    scopus 로고
    • Bedtools: A flexible suite of utilities for comparing genomic features
    • Quinlan, A.R. and Hall, I.M. (2010) BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics, 26, 841-842.
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 30
    • 75249087100 scopus 로고    scopus 로고
    • Edger: A bioconductor package for differential expression analysis of digital gene expression data
    • Robinson, M.D., McCarthy, D.J. and Smyth, G.K. (2010) edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics, 26, 139-140.
    • (2010) Bioinformatics , vol.26 , pp. 139-140
    • Robinson, M.D.1    McCarthy, D.J.2    Smyth, G.K.3
  • 33
    • 84855293838 scopus 로고    scopus 로고
    • Mirdeep2 accurately identifies known and hundreds of novel microrna genes in seven animal clades
    • Friedländer, M.R., Mackowiak, S.D., Li, N., Chen, W. and Rajewsky, N. (2011) miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades. Nucleic Acids Res., 40, 37-52.
    • (2011) Nucleic Acids Res. , vol.40 , pp. 37-52
    • Friedländer, M.R.1    Mackowiak, S.D.2    Li, N.3    Chen, W.4    Rajewsky, N.5
  • 34
    • 67649837030 scopus 로고    scopus 로고
    • Rtracklayer: An R package for interfacing with genome browsers
    • Lawrence, M., Gentleman, R. and Carey, V. (2009) rtracklayer: an R package for interfacing with genome browsers. Bioinformatics, 25, 1841-1842.
    • (2009) Bioinformatics , vol.25 , pp. 1841-1842
    • Lawrence, M.1    Gentleman, R.2    Carey, V.3
  • 35
    • 36749013633 scopus 로고    scopus 로고
    • RNA sequence analysis defines dicer's role in mouse embryonic stem cells
    • Calabrese, J.M., Seila, A.C., Yeo, G.W. and Sharp, P.A. (2007) RNA sequence analysis defines Dicer's role in mouse embryonic stem cells. Proc. Natl Acad. Sci. USA, 104, 18097-18102.
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 18097-18102
    • Calabrese, J.M.1    Seila, A.C.2    Yeo, G.W.3    Sharp, P.A.4
  • 38
    • 48449091318 scopus 로고    scopus 로고
    • Comprehensive microrna profiling reveals a unique human embryonic stem cell signature dominated by a single seed sequence
    • Laurent, L.C., Chen, J., Ulitsky, I., Mueller, F.J., Lu, C., Shamir, R., Fan, J.B. and Loring, J.F. (2008) Comprehensive microRNA profiling reveals a unique human embryonic stem cell signature dominated by a single seed sequence. Stem Cells, 26, 1506-1516.
    • (2008) Stem Cells , vol.26 , pp. 1506-1516
    • Laurent, L.C.1    Chen, J.2    Ulitsky, I.3    Mueller, F.J.4    Lu, C.5    Shamir, R.6    Fan, J.B.7    Loring, J.F.8
  • 42
    • 33745480963 scopus 로고    scopus 로고
    • Specific micrornas modulate embryonic stem cell-derived neurogenesis
    • Krichevsky, A.M., Sonntag, K.C., Isacson, O. and Kosik, K.S. (2006) Specific microRNAs modulate embryonic stem cell-derived neurogenesis. Stem Cells, 24, 857-864.
    • (2006) Stem Cells , vol.24 , pp. 857-864
    • Krichevsky, A.M.1    Sonntag, K.C.2    Isacson, O.3    Kosik, K.S.4
  • 43
    • 65349090170 scopus 로고    scopus 로고
    • MicroRNA and gene expression patterns in the differentiation of human embryonic stem cells
    • Ren, J., Jin, P., Wang, E., Marincola, F.M. and Stroncek, D.F. (2009) MicroRNA and gene expression patterns in the differentiation of human embryonic stem cells. J. Transl. Med., 7, 20.
    • (2009) J. Transl. Med. , vol.7 , pp. 20
    • Ren, J.1    Jin, P.2    Wang, E.3    Marincola, F.M.4    Stroncek, D.F.5
  • 44
    • 33644875300 scopus 로고    scopus 로고
    • Snorna-lbme-db, a comprehensive database of human h/aca and c/d box snornas
    • Lestrade, L. and Weber, M.J. (2006) snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. Nucleic Acids Res., 34, D158-D162.
    • (2006) Nucleic Acids Res , vol.34
    • Lestrade, L.1    Weber, M.J.2
  • 46
    • 0037133942 scopus 로고    scopus 로고
    • Small nucleolar RNAs: An abundant group of noncoding RNAs with diverse cellular functions
    • Kiss, T. (2002) Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions. Cell, 109, 145-148.
    • (2002) Cell , vol.109 , pp. 145-148
    • Kiss, T.1
  • 47
    • 0036591884 scopus 로고    scopus 로고
    • Biogenesis of small nucleolar ribonucleoproteins
    • Filipowicz, W. and Pogacic, V. (2002) Biogenesis of small nucleolar ribonucleoproteins. Curr. Opin. Cell Biol., 14, 319-327.
    • (2002) Curr. Opin. Cell Biol. , vol.14 , pp. 319-327
    • Filipowicz, W.1    Pogacic, V.2
  • 48
    • 12344275917 scopus 로고    scopus 로고
    • Biogenesis of small nuclear rnps
    • Kiss, T. (2004) Biogenesis of small nuclear RNPs. J. Cell. Sci., 117, 5949-5951.
    • (2004) J. Cell. Sci. , vol.117 , pp. 5949-5951
    • Kiss, T.1
  • 51
    • 0030033546 scopus 로고    scopus 로고
    • A mammalian gene with introns instead of exons generating stable RNA products
    • Tycowski, K.T., Shu, M.D. and Steitz, J.A. (1996) A mammalian gene with introns instead of exons generating stable RNA products. Nature, 379, 464-466.
    • (1996) Nature , vol.379 , pp. 464-466
    • Tycowski, K.T.1    Shu, M.D.2    Steitz, J.A.3
  • 52
    • 0031756336 scopus 로고    scopus 로고
    • Classification of gas5 as a multi-small-nucleolar-RNA (snoRNA) host gene and a member of the 50-terminal oligopyrimidine gene family reveals common features of snorna host genes
    • Smith, C.M. and Steitz, J.A. (1998) Classification of gas5 as a multi-small-nucleolar-RNA (snoRNA) host gene and a member of the 50-terminal oligopyrimidine gene family reveals common features of snoRNA host genes. Mol. Cell. Biol., 18, 6897-6909.
    • (1998) Mol. Cell. Biol. , vol.18 , pp. 6897-6909
    • Smith, C.M.1    Steitz, J.A.2
  • 53
    • 0035509699 scopus 로고    scopus 로고
    • The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for ube3a
    • Runte, M., Hüttenhofer, A., Gross, S., Kiefmann, M., Horsthemke, B. and Buiting, K. (2001) The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A. Hum. Mol. Genet., 10, 2687-2700.
    • (2001) Hum. Mol. Genet. , vol.10 , pp. 2687-2700
    • Runte, M.1    Hüttenhofer, A.2    Gross, S.3    Kiefmann, M.4    Horsthemke, B.5    Buiting, K.6
  • 54
    • 30844442607 scopus 로고    scopus 로고
    • The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C
    • Kishore, S. and Stamm, S. (2006) The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C. Science, 311, 230-232.
    • (2006) Science , vol.311 , pp. 230-232
    • Kishore, S.1    Stamm, S.2
  • 56
    • 79956282385 scopus 로고    scopus 로고
    • Prader-willi syndrome: Obesity due to genomic imprinting
    • Butler, M.G. (2011) Prader-Willi syndrome: obesity due to genomic imprinting. Curr. Genomics, 12, 204-215.
    • (2011) Curr. Genomics , vol.12 , pp. 204-215
    • Butler, M.G.1
  • 57
  • 60
    • 62149112931 scopus 로고    scopus 로고
    • Chromosome 15q11-13 duplication syndrome brain reveals epigenetic alterations in gene expression not predicted from copy number
    • Hogart, A., Leung, K.N., Wang, N.J., Wu, D.J., Driscoll, J., Vallero, R.O., Schanen, N.C. and LaSalle, J.M. (2009) Chromosome 15q11-13 duplication syndrome brain reveals epigenetic alterations in gene expression not predicted from copy number. J. Med. Genet., 46, 86-93.
    • (2009) J. Med. Genet. , vol.46 , pp. 86-93
    • Hogart, A.1    Leung, K.N.2    Wang, N.J.3    Wu, D.J.4    Driscoll, J.5    Vallero, R.O.6    Schanen, N.C.7    Lasalle, J.M.8
  • 63
    • 0028964746 scopus 로고
    • Signal recognition particle (SRP), a ubiquitous initiator of protein translocation
    • Lutcke, H. (1995) Signal recognition particle (SRP), a ubiquitous initiator of protein translocation. Eur. J. Biochem., 228, 531-550.
    • (1995) Eur. J. Biochem. , vol.228 , pp. 531-550
    • Lutcke, H.1
  • 64
    • 81255197794 scopus 로고    scopus 로고
    • 7Sk snrna-mediated, gene-specific cooperativity of hmga1 and P-tefb
    • Eilebrecht, S., Benecke, B.J. and Benecke, A. (2011) 7SK snRNA-mediated, gene-specific cooperativity of HMGA1 and P-TEFb. RNA Biol., 8, 1084-93.
    • (2011) RNA Biol. , vol.8 , pp. 1084-1093
    • Eilebrecht, S.1    Benecke, B.J.2    Benecke, A.3
  • 67
    • 34250891308 scopus 로고    scopus 로고
    • Subtractive hybridization identifies novel differentially expressed ncRNA species in EBV-infected human B cells
    • Mrá zek, J., Kreutmayer, S.B., Grässer, F.A., Polacek, N. and Hüttenhofer, A. (2007) Subtractive hybridization identifies novel differentially expressed ncRNA species in EBV-infected human B cells. Nucleic Acids Res., 35, e73.
    • (2007) Nucleic Acids Res. , vol.35
    • Mrázek, J.1    Kreutmayer, S.B.2    Grässer, F.A.3    Polacek, N.4    Hüttenhofer, A.5
  • 70
    • 67449156149 scopus 로고    scopus 로고
    • RNA secondary structure analysis using the vienna RNA package
    • Chapter 12, Unit12, 12
    • Hofacker, I.L. (2009) RNA secondary structure analysis using the Vienna RNA package. Curr. Protoc. Bioinformatics, Chapter 12, Unit12 12.
    • (2009) Curr. Protoc. Bioinformatics
    • Hofacker, I.L.1
  • 73
    • 57149094023 scopus 로고    scopus 로고
    • SnoRNA, a novel precursor of microrna in giardia lamblia
    • Saraiya, A.A. and Wang, C.C. (2008) snoRNA, a novel precursor of microRNA in Giardia lamblia. PLoS Pathog., 4, e1000224.
    • (2008) PLoS Pathog. , vol.4
    • Saraiya, A.A.1    Wang, C.C.2
  • 75
    • 0034703745 scopus 로고    scopus 로고
    • RNA processing marches on
    • Tollervey, D. and Caceres, J.F. (2000) RNA processing marches on. Cell, 103, 703-709.
    • (2000) Cell , vol.103 , pp. 703-709
    • Tollervey, D.1    Caceres, J.F.2
  • 76
    • 33747146784 scopus 로고    scopus 로고
    • Role of miRNA and miRNA processing factors in development and disease
    • Conrad, R., Barrier, M. and Ford, L.P. (2006) Role of miRNA and miRNA processing factors in development and disease. Birth Defects Res. C Embryo Today, 78, 107-117.
    • (2006) Birth Defects Res. C Embryo Today , vol.78 , pp. 107-117
    • Conrad, R.1    Barrier, M.2    Ford, L.P.3
  • 77
    • 79958279955 scopus 로고    scopus 로고
    • Regulation of pre-mirna processing
    • Lehrbach, N.J. and Miska, E.A. (2011) Regulation of pre-miRNA Processing. Adv. Exp. Med. Biol., 700, 67-75.
    • (2011) Adv. Exp. Med. Biol. , vol.700 , pp. 67-75
    • Lehrbach, N.J.1    Miska, E.A.2
  • 78
    • 17344392308 scopus 로고    scopus 로고
    • A new mathematical model for relative quantification in real-time RT-PCR
    • Pfaffl, M.W. (2001) A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res., 29, e45.
    • (2001) Nucleic Acids Res. , vol.29
    • Pfaffl, M.W.1
  • 79
    • 0037062769 scopus 로고    scopus 로고
    • The slice overlay assay: A versatile tool to study the influence of extracellular signals on neuronal development
    • Polleux, F. and Ghosh, A. (2002) The slice overlay assay: a versatile tool to study the influence of extracellular signals on neuronal development. Sci. STKE, 2002, pl9.
    • (2002) Sci. STKE , vol.2002
    • Polleux, F.1    Ghosh, A.2


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