-
1
-
-
2542491127
-
Employment opportunities for non-coding RNAs
-
DOI 10.1016/j.febslet.2004.03.117, PII S0014579304004922
-
Morey,C. and Avner,P. (2004) Employment opportunities for non-coding RNAs. FEBS Lett, 567, 27-34. (Pubitemid 38686419)
-
(2004)
FEBS Letters
, vol.567
, Issue.1
, pp. 27-34
-
-
Morey, C.1
Avner, P.2
-
2
-
-
77950841042
-
Transcriptional gene silencing through epigenetic changes mediated by non-coding RNAs
-
Malecova,B. and Morris,K.V. (2010) Transcriptional gene silencing through epigenetic changes mediated by non-coding RNAs. Curr. Opin. Mol. Ther., 12, 214-222.
-
(2010)
Curr. Opin. Mol. Ther.
, vol.12
, pp. 214-222
-
-
Malecova, B.1
Morris, K.V.2
-
3
-
-
38949188739
-
Non-coding RNAs regulating the transcriptional machinery
-
Barrandon,C., Spiluttini,B. and Bensaude,O. (2008) Non-coding RNAs regulating the transcriptional machinery. Biol. Cell, 100, 83-95.
-
(2008)
Biol. Cell
, vol.100
, pp. 83-95
-
-
Barrandon, C.1
Spiluttini, B.2
Bensaude, O.3
-
4
-
-
59049108328
-
How do microRNAs regulate gene expression?
-
Cannell,I.G., Kong,Y.W. and Bushell,M. (2008) How do microRNAs regulate gene expression? Biochem. Soc. Trans., 36, 1224-1231.
-
(2008)
Biochem. Soc. Trans.
, vol.36
, pp. 1224-1231
-
-
Cannell, I.G.1
Kong, Y.W.2
Bushell, M.3
-
5
-
-
70349595267
-
Protein targeting by the signal recognition particle
-
Grudnik,P., Bange,G. and Sinning,I. (2009) Protein targeting by the signal recognition particle. Biol. Chem., 390, 775-782.
-
(2009)
Biol. Chem.
, vol.390
, pp. 775-782
-
-
Grudnik, P.1
Bange, G.2
Sinning, I.3
-
6
-
-
70349332644
-
Interplay between DNA methylation, histone modification and chromatin remodeling in stem cells and during development
-
Ikegami,K., Ohgane,J., Tanaka,S., Yagi,S. and Shiota,K. (2009) Interplay between DNA methylation, histone modification and chromatin remodeling in stem cells and during development. Int. J. Dev. Biol., 53, 203-214.
-
(2009)
Int. J. Dev. Biol.
, vol.53
, pp. 203-214
-
-
Ikegami, K.1
Ohgane, J.2
Tanaka, S.3
Yagi, S.4
Shiota, K.5
-
7
-
-
0019135807
-
Intracellular distribution of low molecular weight RNA species in HeLa cells
-
Gurney,T. Jr and Eliceiri,G.L. (1980) Intracellular distribution of low molecular weight RNA species in HeLa cells. J. Cell. Biol., 87, 398-403.
-
(1980)
J. Cell. Biol.
, vol.87
, pp. 398-403
-
-
Gurney Jr., T.1
Eliceiri, G.L.2
-
8
-
-
0025053433
-
Characterization of U6 small nuclear RNA cap-specific antibodies. Identification of gamma-monomethyl-GTP cap structure in 7SK and several other human small RNAs
-
Gupta,S., Busch,R.K., Singh,R. and Reddy,R. (1990) Characterization of U6 small nuclear RNA cap-specific antibodies. Identification of gamma-monomethyl-GTP cap structure in 7SK and several other human small RNAs. J. Biol. Chem., 265, 19137-19142.
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 19137-19142
-
-
Gupta, S.1
Busch, R.K.2
Singh, R.3
Reddy, R.4
-
9
-
-
0025039152
-
B2 RNA and 7SK RNA, RNA Polymerase III transcripts, have a cap-like structure at their 50 end
-
Shumyatsky,G.P., Tillib,S.V. and Kramerov,D.A. (1990) B2 RNA and 7SK RNA, RNA Polymerase III transcripts, have a cap-like structure at their 50 end. Nucleic Acids Res., 18, 6347-6351.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 6347-6351
-
-
Shumyatsky, G.P.1
Tillib, S.V.2
Kramerov, D.A.3
-
10
-
-
40649100262
-
A La-related protein modulates 7SK snRNP integrity to suppress P-TEFb-dependent transcriptional elongation and tumorigenesis
-
He,N., Jahchan,N.S., Hong,E., Li,Q., Bayfield,M.A., Maraia,R.J., Luo,K. and Zhou,Q. (2008) A La-related protein modulates 7SK snRNP integrity to suppress P-TEFb-dependent transcriptional elongation and tumorigenesis. Mol. Cell, 29, 588-599.
-
(2008)
Mol. Cell
, vol.29
, pp. 588-599
-
-
He, N.1
Jahchan, N.S.2
Hong, E.3
Li, Q.4
Bayfield, M.A.5
Maraia, R.J.6
Luo, K.7
Zhou, Q.8
-
11
-
-
77449119756
-
A capping-independent function of MePCE in stabilizing 7SK snRNA and facilitating the assembly of 7SK snRNP
-
Xue,Y., Yang,Z., Chen,R. and Zhou,Q. A capping-independent function of MePCE in stabilizing 7SK snRNA and facilitating the assembly of 7SK snRNP. Nucleic Acids Res., 38, 360-369.
-
Nucleic Acids Res.
, vol.38
, pp. 360-369
-
-
Xue, Y.1
Yang, Z.2
Chen, R.3
Zhou, Q.4
-
12
-
-
0033938015
-
The vertebrate 7S K RNA separates hagfish (Myxine glutinosa) and lamprey (Lampetra fluviatilis)
-
Gursoy,H.C., Koper,D. and Benecke,B.J. (2000) The vertebrate 7S K RNA separates hagfish (Myxine glutinosa) and lamprey (Lampetra fluviatilis). J. Mol. Evol., 50, 456-464. (Pubitemid 30429960)
-
(2000)
Journal of Molecular Evolution
, vol.50
, Issue.5
, pp. 456-464
-
-
Gursoy, H.-C.1
Koper, D.2
Benecke, B.-J.3
-
13
-
-
40949135077
-
Invertebrate 7SK snRNAs
-
Gruber,A.R., Koper-Emde,D., Marz,M., Tafer,H., Bernhart,S., Obernosterer,G., Mosig,A., Hofacker,I.L., Stadler,P.F. and Benecke,B.J. (2008) Invertebrate 7SK snRNAs. J. Mol. Evol., 66, 107-115.
-
(2008)
J. Mol. Evol.
, vol.66
, pp. 107-115
-
-
Gruber, A.R.1
Koper-Emde, D.2
Marz, M.3
Tafer, H.4
Bernhart, S.5
Obernosterer, G.6
Mosig, A.7
Hofacker, I.L.8
Stadler, P.F.9
Benecke, B.J.10
-
14
-
-
0017160239
-
Small RNA species of the HeLa cell: Metabolism and subcellular localization
-
Zieve,G. and Penman,S. (1976) Small RNA species of the HeLa cell: metabolism and subcellular localization. Cell, 8, 19-31.
-
(1976)
Cell
, vol.8
, pp. 19-31
-
-
Zieve, G.1
Penman, S.2
-
15
-
-
0035891288
-
7SK small nuclear RNA binds to and inhibits the activity of CDK9/cyclin T complexes
-
DOI 10.1038/35104581
-
Nguyen,V.T., Kiss,T., Michels,A.A. and Bensaude,O. (2001) 7SK small nuclear RNA binds to and inhibits the activity of CDK9/cyclin T complexes. Nature, 414, 322-325. (Pubitemid 33097810)
-
(2001)
Nature
, vol.414
, Issue.6861
, pp. 322-325
-
-
Nguyen, V.T.1
Kiss, T.2
Michels, A.A.3
Bensaude, O.4
-
16
-
-
0035891271
-
The 7SK small nuclear RNA inhibits the CDK9/cyclin T1 kinase to control transcription
-
DOI 10.1038/35104575
-
Yang,Z., Zhu,Q., Luo,K. and Zhou,Q. (2001) The 7SK small nuclear RNA inhibits the CDK9/cyclin T1 kinase to control transcription. Nature, 414, 317-322. (Pubitemid 33097809)
-
(2001)
Nature
, vol.414
, Issue.6861
, pp. 317-322
-
-
Yang, Z.1
Zhu, Q.2
Luo, K.3
Zhou, Q.4
-
17
-
-
0034741714
-
NF-kappaB binds P-TEFb to stimulate transcriptional elongation by RNA Polymerase II
-
Barboric,M., Nissen,R.M., Kanazawa,S., Jabrane-Ferrat,N. and Peterlin,B.M. (2001) NF-kappaB binds P-TEFb to stimulate transcriptional elongation by RNA Polymerase II. Mol. Cell, 8, 327-337.
-
(2001)
Mol. Cell
, vol.8
, pp. 327-337
-
-
Barboric, M.1
Nissen, R.M.2
Kanazawa, S.3
Jabrane-Ferrat, N.4
Peterlin, B.M.5
-
18
-
-
0035233239
-
Genomic-scale measurement of mRNA turnover and the mechanisms of action of the anti-cancer drug flavopiridol
-
RESEARCH0041
-
Lam,L.T., Pickeral,O.K., Peng,A.C., Rosenwald,A., Hurt,E.M., Giltnane,J.M., Averett,L.M., Zhao,H., Davis,R.E., Sathyamoorthy,M. et al. (2001) Genomic-scale measurement of mRNA turnover and the mechanisms of action of the anti-cancer drug flavopiridol. Genome Biol., 2, RESEARCH0041.
-
(2001)
Genome Biol.
, vol.2
-
-
Lam, L.T.1
Pickeral, O.K.2
Peng, A.C.3
Rosenwald, A.4
Hurt, E.M.5
Giltnane, J.M.6
Averett, L.M.7
Zhao, H.8
Davis, R.E.9
Sathyamoorthy, M.10
-
19
-
-
0035971078
-
Androgen receptor interacts with the positive elongation factor P-TEFb and enhances the efficiency of transcriptional elongation
-
Lee,D.K., Duan,H.O. and Chang,C. (2001) Androgen receptor interacts with the positive elongation factor P-TEFb and enhances the efficiency of transcriptional elongation. J. Biol. Chem., 276, 9978-9984.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 9978-9984
-
-
Lee, D.K.1
Duan, H.O.2
Chang, C.3
-
20
-
-
50049085170
-
The positive transcription elongation factor b is an essential cofactor for the activation of transcription by myocyte enhancer factor 2
-
Nojima,M., Huang,Y., Tyagi,M., Kao,H.Y. and Fujinaga,K. (2008) The positive transcription elongation factor b is an essential cofactor for the activation of transcription by myocyte enhancer factor 2. J. Mol. Biol., 382, 275-287.
-
(2008)
J. Mol. Biol.
, vol.382
, pp. 275-287
-
-
Nojima, M.1
Huang, Y.2
Tyagi, M.3
Kao, H.Y.4
Fujinaga, K.5
-
21
-
-
0242498382
-
Interactions between the aryl hydrocarbon receptor and P-TEFb. Sequential recruitment of transcription factors and differential phosphorylation of C-terminal domain of RNA Polymerase II at cyp1a1 promoter
-
Tian,Y., Ke,S., Chen,M. and Sheng,T. (2003) Interactions between the aryl hydrocarbon receptor and P-TEFb. Sequential recruitment of transcription factors and differential phosphorylation of C-terminal domain of RNA Polymerase II at cyp1a1 promoter. J. Biol. Chem., 278, 44041-44048.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 44041-44048
-
-
Tian, Y.1
Ke, S.2
Chen, M.3
Sheng, T.4
-
22
-
-
0032548918
-
A novel CDK9-associated C-type cyclin interacts directly with HIV-1 Tat and mediates its high-affinity, loop-specific binding to TAR RNA
-
Wei,P., Garber,M.E., Fang,S.M., Fischer,W.H. and Jones,K.A. (1998) A novel CDK9-associated C-type cyclin interacts directly with HIV-1 Tat and mediates its high-affinity, loop-specific binding to TAR RNA. Cell, 92, 451-462.
-
(1998)
Cell
, vol.92
, pp. 451-462
-
-
Wei, P.1
Garber, M.E.2
Fang, S.M.3
Fischer, W.H.4
Jones, K.A.5
-
23
-
-
15144348173
-
Trans.cription elongation factor P-TEFb is required for HIV-1 tat transactivation in vitro
-
Zhu,Y., Pe'ery,T., Peng,J., Ramanathan,Y., Marshall,N., Marshall,T., Amendt,B., Mathews,M.B. and Price,D.H. (1997) Trans.cription elongation factor P-TEFb is required for HIV-1 tat transactivation in vitro. Genes Dev., 11, 2622-2632.
-
(1997)
Genes Dev.
, vol.11
, pp. 2622-2632
-
-
Zhu, Y.1
Pe'ery, T.2
Peng, J.3
Ramanathan, Y.4
Marshall, N.5
Marshall, T.6
Amendt, B.7
Mathews, M.B.8
Price, D.H.9
-
24
-
-
77951954237
-
HIV-1 Tat assembles a multifunctional transcription elongation complex and stably associates with the 7SK snRNP
-
Sobhian,B., Laguette,N., Yatim,A., Nakamura,M., Levy,Y., Kiernan,R. and Benkirane,M. HIV-1 Tat assembles a multifunctional transcription elongation complex and stably associates with the 7SK snRNP. Mol. Cell, 38, 439-451.
-
Mol. Cell
, vol.38
, pp. 439-451
-
-
Sobhian, B.1
Laguette, N.2
Yatim, A.3
Nakamura, M.4
Levy, Y.5
Kiernan, R.6
Benkirane, M.7
-
25
-
-
66449089824
-
7SK RNA, a non-coding RNA regulating P-TEFb, a general transcription factor
-
Diribarne,G. and Bensaude,O. (2009) 7SK RNA, a non-coding RNA regulating P-TEFb, a general transcription factor. RNA Biol., 6, 122-128.
-
(2009)
RNA Biol.
, vol.6
, pp. 122-128
-
-
Diribarne, G.1
Bensaude, O.2
-
26
-
-
35148867404
-
The transcription-dependent dissociation of P-TEFb-HEXIM1-7SK RNA relies upon formation of hnRNP-7SK RNA complexes
-
Barrandon,C., Bonnet,F., Nguyen,V.T., Labas,V. and Bensaude,O. (2007) The transcription-dependent dissociation of P-TEFb-HEXIM1-7SK RNA relies upon formation of hnRNP-7SK RNA complexes. Mol. Cell. Biol., 27, 6996-7006.
-
(2007)
Mol. Cell. Biol.
, vol.27
, pp. 6996-7006
-
-
Barrandon, C.1
Bonnet, F.2
Nguyen, V.T.3
Labas, V.4
Bensaude, O.5
-
27
-
-
34547821418
-
Dynamic remodelling of human 7SK snRNP controls the nuclear level of active P-TEFb
-
DOI 10.1038/sj.emboj.7601783, PII 7601783
-
Van Herreweghe,E., Egloff,S., Goiffon,I., Jady,B.E., Froment,C., Monsarrat,B. and Kiss,T. (2007) Dynamic remodelling of human 7SK snRNP controls the nuclear level of active P-TEFb. EMBO J., 26, 3570-3580. (Pubitemid 47236869)
-
(2007)
EMBO Journal
, vol.26
, Issue.15
, pp. 3570-3580
-
-
Van Herreweghe, E.1
Egloff, S.2
Goiffon, I.3
Jady, B.E.4
Froment, C.5
Monsarrat, B.6
Kiss, T.7
-
28
-
-
34249053165
-
RNA-based affinity purification reveals 7SK RNPs with distinct composition and regulation
-
DOI 10.1261/rna.565207
-
Hogg,J.R. and Collins,K. (2007) RNA-based affinity purification reveals 7SK RNPs with distinct composition and regulation. RNA, 13, 868-880. (Pubitemid 46799821)
-
(2007)
RNA
, vol.13
, Issue.6
, pp. 868-880
-
-
Hogg, J.R.1
Collins, K.2
-
29
-
-
0034652838
-
Transcription by RNA polymerases I and III
-
Paule,M.R. and White,R.J. (2000) Survey and summary: transcription by RNA Polymerases I and III. Nucleic Acids Res., 28, 1283-1298. (Pubitemid 30142670)
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.6
, pp. 1283-1298
-
-
Paule, M.R.1
White, R.J.2
-
30
-
-
27744459377
-
siRNA depletion of 7SK snRNA induces apoptosis but does not affect expression of the HIV-1 LTR or P-TEFb-dependent cellular genes
-
Haaland,R.E., Herrmann,C.H. and Rice,A.P. (2005) siRNA depletion of 7SK snRNA induces apoptosis but does not affect expression of the HIV-1 LTR or P-TEFb-dependent cellular genes. J. Cell. Physiol., 205, 463-470.
-
(2005)
J. Cell. Physiol.
, vol.205
, pp. 463-470
-
-
Haaland, R.E.1
Herrmann, C.H.2
Rice, A.P.3
-
31
-
-
77949360667
-
EBER2 RNA-induced transcriptome changes identify cellular processes likely targeted during Epstein Barr Virus infection
-
Eilebrecht,S., Pellay,F.X., Odenwalder,P., Brysbaert,G., Benecke,B.J. and Benecke,A. (2008) EBER2 RNA-induced transcriptome changes identify cellular processes likely targeted during Epstein Barr Virus infection. BMC Res. Notes, 1, 100.
-
(2008)
BMC Res. Notes
, vol.1
, pp. 100
-
-
Eilebrecht, S.1
Pellay, F.X.2
Odenwalder, P.3
Brysbaert, G.4
Benecke, B.J.5
Benecke, A.6
-
32
-
-
0015847039
-
A new technique for the assay of infectivity of human adenovirus 5 DNA
-
Graham,F.L. and van der Eb,A.J. (1973) A new technique for the assay of infectivity of human adenovirus 5 DNA. Virology, 52, 456-467.
-
(1973)
Virology
, vol.52
, pp. 456-467
-
-
Graham, F.L.1
Van Der Eb, A.J.2
-
33
-
-
0021100690
-
Accurate transcription initiation by RNA Polymerase II in a soluble extract from isolated mammalian nuclei
-
Dignam,J.D., Lebovitz,R.M. and Roeder,R.G. (1983) Accurate transcription initiation by RNA Polymerase II in a soluble extract from isolated mammalian nuclei. Nucleic Acids Res., 11, 1475-1489.
-
(1983)
Nucleic Acids Res.
, vol.11
, pp. 1475-1489
-
-
Dignam, J.D.1
Lebovitz, R.M.2
Roeder, R.G.3
-
34
-
-
0035019156
-
Loss of HCF-1-chromatin association precedes temperature-induced growth arrest of tsBN67 cells
-
Wysocka,J., Reilly,P.T. and Herr,W. (2001) Loss of HCF-1-chromatin association precedes temperature-induced growth arrest of tsBN67 cells. Mol. Cell. Biol., 21, 3820-3829.
-
(2001)
Mol. Cell. Biol.
, vol.21
, pp. 3820-3829
-
-
Wysocka, J.1
Reilly, P.T.2
Herr, W.3
-
35
-
-
0017184389
-
A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
-
Bradford,M.M. (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem., 72, 248-254.
-
(1976)
Anal. Biochem.
, vol.72
, pp. 248-254
-
-
Bradford, M.M.1
-
36
-
-
0014949207
-
Cleavage of structural proteins during the assembly of the head of bacteriophage T4
-
Laemmli,U.K. (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature, 227, 680-685.
-
(1970)
Nature
, vol.227
, pp. 680-685
-
-
Laemmli, U.K.1
-
37
-
-
33744981623
-
Image Processing with ImageJ
-
Abramoff,M.D., Magelhaes,P.J. and Ram,S.J. (2004) Image Processing with ImageJ. Biophotonics Int., 11, 36-42.
-
(2004)
Biophotonics Int.
, vol.11
, pp. 36-42
-
-
Abramoff, M.D.1
Magelhaes, P.J.2
Ram, S.J.3
-
38
-
-
0023277545
-
Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction
-
Chomczynski,P. and Sacchi,N. (1987) Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal. Biochem., 162, 156-159.
-
(1987)
Anal. Biochem.
, vol.162
, pp. 156-159
-
-
Chomczynski, P.1
Sacchi, N.2
-
39
-
-
0029927505
-
Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels
-
Shevchenko,A., Wilm,M., Vorm,O. and Mann,M. (1996) Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels. Anal. Chem., 68, 850-858.
-
(1996)
Anal. Chem.
, vol.68
, pp. 850-858
-
-
Shevchenko, A.1
Wilm, M.2
Vorm, O.3
Mann, M.4
-
40
-
-
0024806949
-
Computer prediction of RNA structure
-
Zuker,M. (1989) Computer prediction of RNA structure. Methods Enzymol., 180, 262-288.
-
(1989)
Methods Enzymol.
, vol.180
, pp. 262-288
-
-
Zuker, M.1
-
41
-
-
30044442305
-
Avoiding inconsistencies over time and tracking difficulties in Applied Biosystems AB1700/Panther probe-to-gene annotations
-
Noth,S. and Benecke,A. (2005) Avoiding inconsistencies over time and tracking difficulties in Applied Biosystems AB1700/Panther probe-to-gene annotations. BMC Bioinformatics, 6, 307.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 307
-
-
Noth, S.1
Benecke, A.2
-
42
-
-
33747330684
-
Normalization Using Weighted Negative Second Order Exponential Error Functions (NeONORM) Provides Robustness Against Asymmetries in Comparative Transcriptome Profiles and Avoids False Calls
-
DOI 10.1016/S1672-0229(06)60021-1, PII S1672022906600211
-
Noth,S., Brysbaert,G. and Benecke,A. (2006) Normalization using weighted negative second order exponential error functions (NeONORM) provides robustness against asymmetries in comparative transcriptome profiles and avoids false calls. Genomics Proteomics Bioinformatics, 4, 90-109. (Pubitemid 44247935)
-
(2006)
Genomics, Proteomics and Bioinformatics
, vol.4
, Issue.2
, pp. 90-109
-
-
Noth, S.1
Brysbaert, G.2
Benecke, A.3
-
43
-
-
34248664998
-
High-sensitivity transcriptome data structure and implications for analysis and biologic interpretation
-
Noth,S., Brysbaert,G., Pellay,F.X. and Benecke,A. (2006) High-sensitivity transcriptome data structure and implications for analysis and biologic interpretation. Genomics Proteomics Bioinformatics, 4, 212-229.
-
(2006)
Genomics Proteomics Bioinformatics
, vol.4
, pp. 212-229
-
-
Noth, S.1
Brysbaert, G.2
Pellay, F.X.3
Benecke, A.4
-
44
-
-
77249141663
-
TAF6delta orchestrates an apoptotic transcriptome profile and interacts functionally with p53
-
Wilhelm,E., Kornete,M., Targat,B., Vigneault-Edwards,J., Frontini,M., Tora,L., Benecke,A. and Bell,B. TAF6delta orchestrates an apoptotic transcriptome profile and interacts functionally with p53. BMC Mol. Biol., 11, 10.
-
BMC Mol. Biol.
, vol.11
, pp. 10
-
-
Wilhelm, E.1
Kornete, M.2
Targat, B.3
Vigneault-Edwards, J.4
Frontini, M.5
Tora, L.6
Benecke, A.7
Bell, B.8
-
45
-
-
33750986493
-
Lentivirus-mediated RNA interference of HMGA1 promotes chemosensitivity to gemcitabine in pancreatic adenocarcinoma
-
discussion 1263
-
Liau,S.S., Ashley,S.W. and Whang,E.E. (2006) Lentivirus-mediated RNA interference of HMGA1 promotes chemosensitivity to gemcitabine in pancreatic adenocarcinoma. J. Gastrointest. Surg, 10, 1254-1262, discussion 1263.
-
(2006)
J. Gastrointest. Surg
, vol.10
, pp. 1254-1262
-
-
Liau, S.S.1
Ashley, S.W.2
Whang, E.E.3
-
46
-
-
30644478471
-
Regulation of Polymerase II transcription by 7SK snRNA: Two distinct RNA elements direct P-TEFb and HEXIM1 binding
-
Egloff,S., Van Herreweghe,E. and Kiss,T. (2006) Regulation of Polymerase II transcription by 7SK snRNA: two distinct RNA elements direct P-TEFb and HEXIM1 binding. Mol. Cell. Biol., 26, 630-642.
-
(2006)
Mol. Cell. Biol.
, vol.26
, pp. 630-642
-
-
Egloff, S.1
Van Herreweghe, E.2
Kiss, T.3
-
47
-
-
34547821418
-
Dynamic remodelling of human 7SK snRNP controls the nuclear level of active P-TEFb
-
DOI 10.1038/sj.emboj.7601783, PII 7601783
-
Van Herreweghe,E., Egloff,S., Goiffon,I., Jady,B.E., Froment,C., Monsarrat,B. and Kiss,T. (2007) Dynamic remodelling of human 7SK snRNP controls the nuclear level of active P-TEFb. EMBO J., 26, 3570-3580. (Pubitemid 47236869)
-
(2007)
EMBO Journal
, vol.26
, Issue.15
, pp. 3570-3580
-
-
Van Herreweghe, E.1
Egloff, S.2
Goiffon, I.3
Jady, B.E.4
Froment, C.5
Monsarrat, B.6
Kiss, T.7
-
48
-
-
0035962921
-
HMGI/Y proteins: Flexible regulators of transcription and chromatin structure
-
Reeves,R. and Beckerbauer,L. (2001) HMGI/Y proteins: flexible regulators of transcription and chromatin structure. Biochim. Biophys. Acta, 1519, 13-29.
-
(2001)
Biochim. Biophys. Acta
, vol.1519
, pp. 13-29
-
-
Reeves, R.1
Beckerbauer, L.2
-
49
-
-
0035904395
-
Molecular biology of HMGA proteins: Hubs of nuclear function
-
Reeves,R. (2001) Molecular biology of HMGA proteins: hubs of nuclear function. Gene, 277, 63-81.
-
(2001)
Gene
, vol.277
, pp. 63-81
-
-
Reeves, R.1
-
50
-
-
0025196283
-
The A.T-DNA-binding domain of mammalian high mobility group I chromosomal proteins. A novel peptide motif for recognizing DNA structure
-
Reeves,R. and Nissen,M.S. (1990) The A.T-DNA-binding domain of mammalian high mobility group I chromosomal proteins. A novel peptide motif for recognizing DNA structure. J. Biol. Chem., 265, 8573-8582.
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 8573-8582
-
-
Reeves, R.1
Nissen, M.S.2
-
51
-
-
4444254840
-
Dynamic interaction of HMGA1a proteins with chromatin
-
DOI 10.1242/jcs.01160
-
Harrer,M., Luhrs,H., Bustin,M., Scheer,U. and Hock,R. (2004) Dynamic interaction of HMGA1a proteins with chromatin. J. Cell Sci., 117, 3459-3471. (Pubitemid 39206386)
-
(2004)
Journal of Cell Science
, vol.117
, Issue.16
, pp. 3459-3471
-
-
Harrer, M.1
Luhrs, H.2
Bustin, M.3
Scheer, U.4
Hock, R.5
-
52
-
-
0023404462
-
Posttranscriptional gene regulation and specific binding of the nonhistone protein HMG-I by the 30 untranslated region of bovine interleukin 2 cDNA
-
Reeves,R., Elton,T.S., Nissen,M.S., Lehn,D. and Johnson,K.R. (1987) Posttranscriptional gene regulation and specific binding of the nonhistone protein HMG-I by the 30 untranslated region of bovine interleukin 2 cDNA. Proc. Natl Acad. Sci. USA, 84, 6531-6535.
-
(1987)
Proc. Natl Acad. Sci. USA
, vol.84
, pp. 6531-6535
-
-
Reeves, R.1
Elton, T.S.2
Nissen, M.S.3
Lehn, D.4
Johnson, K.R.5
-
53
-
-
0034121077
-
Binding of HMG-I(Y) imparts architectural specificity to a positioned nucleosome on the promoter of the human interleukin-2 receptor alpha gene
-
Reeves,R., Leonard,W.J. and Nissen,M.S. (2000) Binding of HMG-I(Y) imparts architectural specificity to a positioned nucleosome on the promoter of the human interleukin-2 receptor alpha gene. Mol. Cell. Biol., 20, 4666-4679.
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 4666-4679
-
-
Reeves, R.1
Leonard, W.J.2
Nissen, M.S.3
-
54
-
-
65249092577
-
The dynamics of HMG protein-chromatin interactions in living cells
-
Gerlitz,G., Hock,R., Ueda,T. and Bustin,M. (2009) The dynamics of HMG protein-chromatin interactions in living cells. Biochem. Cell. Biol., 87, 127-137.
-
(2009)
Biochem. Cell. Biol.
, vol.87
, pp. 127-137
-
-
Gerlitz, G.1
Hock, R.2
Ueda, T.3
Bustin, M.4
-
55
-
-
0019444924
-
Two small RNAs encoded by Epstein-Barr virus and complexed with protein are precipitated by antibodies from patients with systemic lupus erythematosus
-
Lerner,M.R., Andrews,N.C., Miller,G. and Steitz,J.A. (1981) Two small RNAs encoded by Epstein-Barr virus and complexed with protein are precipitated by antibodies from patients with systemic lupus erythematosus. Proc. Natl Acad. Sci. USA, 78, 805-809.
-
(1981)
Proc. Natl Acad. Sci. USA
, vol.78
, pp. 805-809
-
-
Lerner, M.R.1
Andrews, N.C.2
Miller, G.3
Steitz, J.A.4
-
56
-
-
0037379032
-
Efficient transcription of the EBER2 gene depends on the structural integrity of the RNA
-
DOI 10.1261/rna.2176603
-
Dumpelmann,E., Mittendorf,H. and Benecke,B.J. (2003) Efficient transcription of the EBER2 gene depends on the structural integrity of the RNA. RNA, 9, 432-442. (Pubitemid 36356730)
-
(2003)
RNA
, vol.9
, Issue.4
, pp. 432-442
-
-
Dumpelmann, E.1
Mittendorf, H.2
Benecke, B.-J.3
-
57
-
-
8044225313
-
High level expression of the HMGI (Y) gene during embryonic development
-
Chiappetta,G., Avantaggiato,V., Visconti,R., Fedele,M., Battista,S., Trapasso,F., Merciai,B.M., Fidanza,V., Giancotti,V., Santoro,M. et al. (1996) High level expression of the HMGI (Y) gene during embryonic development. Oncogene, 13, 2439-2446. (Pubitemid 27026027)
-
(1996)
Oncogene
, vol.13
, Issue.11
, pp. 2439-2446
-
-
Chiappetta, G.1
Avantaggiato, V.2
Visconti, R.3
Fedele, M.4
Battista, S.5
Trapasso, F.6
Merciai, B.M.7
Fidanza, V.8
Giancotti, V.9
Santoro, M.10
Simeone, A.11
Fusco, A.12
-
58
-
-
0028970056
-
The expression of the high mobility group HMGI (Y) proteins correlates with the malignant phenotype of human thyroid neoplasias
-
Chiappetta,G., Bandiera,A., Berlingieri,M.T., Visconti,R., Manfioletti,G., Battista,S., Martinez-Tello,F.J., Santoro,M., Giancotti,V. and Fusco,A. (1995) The expression of the high mobility group HMGI (Y) proteins correlates with the malignant phenotype of human thyroid neoplasias. Oncogene, 10, 1307-1314.
-
(1995)
Oncogene
, vol.10
, pp. 1307-1314
-
-
Chiappetta, G.1
Bandiera, A.2
Berlingieri, M.T.3
Visconti, R.4
Manfioletti, G.5
Battista, S.6
Martinez-Tello, F.J.7
Santoro, M.8
Giancotti, V.9
Fusco, A.10
-
60
-
-
36448992338
-
Roles of HMGA proteins in cancer
-
Fusco,A. and Fedele,M. (2007) Roles of HMGA proteins in cancer. Nat. Rev. Cancer, 7, 899-910.
-
(2007)
Nat. Rev. Cancer
, vol.7
, pp. 899-910
-
-
Fusco, A.1
Fedele, M.2
-
61
-
-
0031936644
-
Chromosomal translocations in benign tumors: The HMGI proteins
-
Hess,J.L. (1998) Chromosomal translocations in benign tumors: the HMGI proteins. Am J. Clin. Pathol., 109, 251-261.
-
(1998)
Am J. Clin. Pathol.
, vol.109
, pp. 251-261
-
-
Hess, J.L.1
-
62
-
-
0029094903
-
Functional roles of the transcription factor Oct-2A and the high mobility group protein I/Y in HLA-DRA gene expression
-
Abdulkadir,S.A., Krishna,S., Thanos,D., Maniatis,T., Strominger,J.L. and Ono,S.J. (1995) Functional roles of the transcription factor Oct-2A and the high mobility group protein I/Y in HLA-DRA gene expression. J. Exp. Med., 182, 487-500.
-
(1995)
J. Exp. Med.
, vol.182
, pp. 487-500
-
-
Abdulkadir, S.A.1
Krishna, S.2
Thanos, D.3
Maniatis, T.4
Strominger, J.L.5
Ono, S.J.6
-
63
-
-
0032915869
-
Specific binding of high-mobility-group I (HMGI) protein and histone H1 to the upstream AT-rich region of the murine beta interferon promoter: HMGI protein acts as a potential antirepressor of the promoter
-
Bonnefoy,E., Bandu,M.T. and Doly,J. (1999) Specific binding of high-mobility-group I (HMGI) protein and histone H1 to the upstream AT-rich region of the murine beta interferon promoter: HMGI protein acts as a potential antirepressor of the promoter. Mol. Cell. Biol., 19, 2803-2816.
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 2803-2816
-
-
Bonnefoy, E.1
Bandu, M.T.2
Doly, J.3
-
64
-
-
0032504751
-
Hypoxia induces high-mobility-group protein I(Y) and transcription of the cyclooxygenase-2 gene in human vascular endothelium
-
Ji,Y.S., Xu,Q. and Schmedtje,J.F. Jr (1998) Hypoxia induces high-mobility-group protein I(Y) and transcription of the cyclooxygenase-2 gene in human vascular endothelium. Circ Res., 83, 295-304.
-
(1998)
Circ Res.
, vol.83
, pp. 295-304
-
-
Ji, Y.S.1
Xu, Q.2
Schmedtje Jr., J.F.3
-
65
-
-
4143074927
-
Identification of the genes up- and down-regulated by the high mobility group A1 (HMGA1) proteins: Tissue specificity of the HMGA1-dependent gene regulation
-
Martinez Hoyos,J., Fedele,M., Battista,S., Pentimalli,F., Kruhoffer,M., Arra,C., Orntoft,T.F., Croce,C.M. and Fusco,A. (2004) Identification of the genes up- and down-regulated by the high mobility group A1 (HMGA1) proteins: tissue specificity of the HMGA1-dependent gene regulation. Cancer Res., 64, 5728-5735.
-
(2004)
Cancer Res.
, vol.64
, pp. 5728-5735
-
-
Martinez Hoyos, J.1
Fedele, M.2
Battista, S.3
Pentimalli, F.4
Kruhoffer, M.5
Arra, C.6
Orntoft, T.F.7
Croce, C.M.8
Fusco, A.9
-
66
-
-
34247874793
-
Tat competes with HEXIM1 to increase the active pool of P-TEFb for HIV-1 transcription
-
Barboric,M., Yik,J.H., Czudnochowski,N., Yang,Z., Chen,R., Contreras,X., Geyer,M., Matija., Peterlin,B. and Zhou,Q. (2007) Tat competes with HEXIM1 to increase the active pool of P-TEFb for HIV-1 transcription. Nucleic Acids Res., 35, 2003-2012.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 2003-2012
-
-
Barboric, M.1
Yik, J.H.2
Czudnochowski, N.3
Yang, Z.4
Chen, R.5
Contreras, X.6
Geyer, M.7
Matija8
Peterlin, B.9
Zhou, Q.10
-
67
-
-
34547850648
-
Manipulation of P-TEFb control machinery by HIV: Recruitment of P-TEFb from the large form by Tat and binding of HEXIM1 to TAR
-
Sedore,S.C., Byers,S.A., Biglione,S., Price,J.P., Maury,W.J. and Price,D.H. (2007) Manipulation of P-TEFb control machinery by HIV: recruitment of P-TEFb from the large form by Tat and binding of HEXIM1 to TAR. Nucleic Acids Res., 35, 4347-4358.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 4347-4358
-
-
Sedore, S.C.1
Byers, S.A.2
Biglione, S.3
Price, J.P.4
Maury, W.J.5
Price, D.H.6
-
68
-
-
65349093357
-
Role of the HIV-1 positive elongation factor P-TEFb and inhibitors thereof
-
Wang,Y., Liu,X.Y. and De Clercq,E. (2009) Role of the HIV-1 positive elongation factor P-TEFb and inhibitors thereof. Mini. Rev. Med. Chem., 9, 379-385.
-
(2009)
Mini. Rev. Med. Chem.
, vol.9
, pp. 379-385
-
-
Wang, Y.1
Liu, X.Y.2
De Clercq, E.3
-
69
-
-
2942628287
-
A human immunodeficiency virus type 1 Tat-like arginine-rich RNA-binding domain is essential for HEXIM1 to inhibit RNA Polymerase II transcription through 7SK snRNA-mediated inactivation of P-TEFb
-
Yik,J.H., Chen,R., Pezda,A.C., Samford,C.S. and Zhou,Q. (2004) A human immunodeficiency virus type 1 Tat-like arginine-rich RNA-binding domain is essential for HEXIM1 to inhibit RNA Polymerase II transcription through 7SK snRNA-mediated inactivation of P-TEFb. Mol. Cell. Biol., 24, 5094-5105.
-
(2004)
Mol. Cell. Biol.
, vol.24
, pp. 5094-5105
-
-
Yik, J.H.1
Chen, R.2
Pezda, A.C.3
Samford, C.S.4
Zhou, Q.5
-
70
-
-
56849106137
-
HIV induced AIDS and related cancers: Chronic immune activation and future therapeutic strategies
-
Cadogan,M. and Dalgleish,A.G. (2008) HIV induced AIDS and related cancers: chronic immune activation and future therapeutic strategies. Adv Cancer Res., 101, 349-395.
-
(2008)
Adv Cancer Res.
, vol.101
, pp. 349-395
-
-
Cadogan, M.1
Dalgleish, A.G.2
-
71
-
-
27244431778
-
AIDS-related lymphomas: From pathogenesis to pathology
-
Carbone,A. and Gloghini,A. (2005) AIDS-related lymphomas: from pathogenesis to pathology. Br. J. Haematol., 130, 662-670.
-
(2005)
Br. J. Haematol.
, vol.130
, pp. 662-670
-
-
Carbone, A.1
Gloghini, A.2
-
72
-
-
34648828546
-
Molecular biology of KSHV in relation to AIDS-associated oncogenesis
-
Greene,W., Kuhne,K., Ye,F., Chen,J., Zhou,F., Lei,X. and Gao,S.J. (2007) Molecular biology of KSHV in relation to AIDS-associated oncogenesis. Cancer Treat Res., 133, 69-127.
-
(2007)
Cancer Treat Res.
, vol.133
, pp. 69-127
-
-
Greene, W.1
Kuhne, K.2
Ye, F.3
Chen, J.4
Zhou, F.5
Lei, X.6
Gao, S.J.7
-
73
-
-
73949094320
-
AIDS-related Kaposi's sarcoma: State of the art and therapeutic strategies
-
Martellotta,F., Berretta,M., Vaccher,E., Schioppa,O., Zanet,E. and Tirelli,U. (2009) AIDS-related Kaposi's sarcoma: state of the art and therapeutic strategies. Curr. HIV Res., 7, 634-638.
-
(2009)
Curr. HIV Res.
, vol.7
, pp. 634-638
-
-
Martellotta, F.1
Berretta, M.2
Vaccher, E.3
Schioppa, O.4
Zanet, E.5
Tirelli, U.6
-
74
-
-
27744541450
-
snRNAs as the catalysts of pre-mRNA splicing
-
Valadkhan,S. (2005) snRNAs as the catalysts of pre-mRNA splicing. Curr. Opin. Chem. Biol., 9, 603-608.
-
(2005)
Curr. Opin. Chem. Biol.
, vol.9
, pp. 603-608
-
-
Valadkhan, S.1
-
76
-
-
0031022249
-
C-myc deregulation during transformation induction: Involvement of 7SK RNA
-
Luo,Y., Kurz,J., MacAfee,N. and Krause,M.O. (1997) C-myc deregulation during transformation induction: involvement of 7SK RNA. J. Cell. Biochem., 4, 313-327.
-
(1997)
J. Cell. Biochem.
, vol.4
, pp. 313-327
-
-
Luo, Y.1
Kurz, J.2
MacAfee, N.3
Krause, M.O.4
-
77
-
-
71049141339
-
HMGA1a recognition candidate DNA sequences in humans
-
Manabe,T., Katayama,T. and Tohyama,M. (2009) HMGA1a recognition candidate DNA sequences in humans. PLoS ONE, 4, e8004.
-
(2009)
PLoS ONE
, vol.4
-
-
Manabe, T.1
Katayama, T.2
Tohyama, M.3
|