메뉴 건너뛰기




Volumn 14, Issue 8, 2012, Pages 2113-2126

Phylogenomics of T4 cyanophages: Lateral gene transfer in the 'core' and origins of host genes

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIOPHAGE T4; CLASSIFICATION; CYANOBACTERIUM; EVOLUTION; GENETIC RECOMBINATION; GENETICS; HORIZONTAL GENE TRANSFER; PHYLOGENY; PROCHLOROCOCCUS; SEA; VIROLOGY; VIRUS GENOME;

EID: 84864387036     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/j.1462-2920.2012.02704.x     Document Type: Article
Times cited : (96)

References (97)
  • 2
    • 77958484635 scopus 로고    scopus 로고
    • Mobile regulatory cassettes mediate modular shuffling in t4-type phage genomes
    • Arbiol, C., Comeau, A.M., Kutateladze, M., Adamia, R., and Krisch, H.M. (2010) Mobile regulatory cassettes mediate modular shuffling in t4-type phage genomes. Genome Biol Evol 2: 140-152.
    • (2010) Genome Biol Evol , vol.2 , pp. 140-152
    • Arbiol, C.1    Comeau, A.M.2    Kutateladze, M.3    Adamia, R.4    Krisch, H.M.5
  • 3
    • 0019231684 scopus 로고
    • A theory of modular evolution for bacteriophages
    • Botstein, D. (1980) A theory of modular evolution for bacteriophages. Ann NY Acad Sci 354: 484-490.
    • (1980) Ann NY Acad Sci , vol.354 , pp. 484-490
    • Botstein, D.1
  • 4
    • 56149118576 scopus 로고    scopus 로고
    • Modelling the fitness consequences of a cyanophage-encoded photosynthesis gene
    • Bragg, J.G., and Chisholm, S.W. (2008) Modelling the fitness consequences of a cyanophage-encoded photosynthesis gene. PLoS ONE 3: e3550.
    • (2008) PLoS ONE , vol.3
    • Bragg, J.G.1    Chisholm, S.W.2
  • 7
    • 44349124497 scopus 로고    scopus 로고
    • Evidence for the intense exchange of mazG in marine cyanophages by horizontal gene transfer
    • Bryan, M.J., Burroughs, N.J., Spence, E.M., Clokie, M.R.J., Mann, N.H., and Bryan, S.J. (2008) Evidence for the intense exchange of mazG in marine cyanophages by horizontal gene transfer. PLoS ONE 3: e2048.
    • (2008) PLoS ONE , vol.3
    • Bryan, M.J.1    Burroughs, N.J.2    Spence, E.M.3    Clokie, M.R.J.4    Mann, N.H.5    Bryan, S.J.6
  • 8
    • 84864383249 scopus 로고    scopus 로고
    • Classification of bacteriophages. The Bacteriophages. Oxford University Press. 8-16
    • Calendar, R. (2006) Classification of bacteriophages. The Bacteriophages. Oxford University Press. 8-16.
    • (2006)
    • Calendar, R.1
  • 9
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Castresana, J. (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17: 540-552.
    • (2000) Mol Biol Evol , vol.17 , pp. 540-552
    • Castresana, J.1
  • 11
    • 33645461497 scopus 로고    scopus 로고
    • Transcription of a 'photosynthetic' T4-type phage during infection of a marine cyanobacterium
    • Clokie, M.R.J., Shan, J., Bailey, S., Jia, Y., and Krisch, H.M. (2006) Transcription of a 'photosynthetic' T4-type phage during infection of a marine cyanobacterium. Environ Microbiol 8: 827-835.
    • (2006) Environ Microbiol , vol.8 , pp. 827-835
    • Clokie, M.R.J.1    Shan, J.2    Bailey, S.3    Jia, Y.4    Krisch, H.M.5
  • 12
    • 78649868522 scopus 로고    scopus 로고
    • Ecosystem-specific selection pressures revealed through comparative population genomics
    • Coleman, M.L., and Chisholm, S.W. (2010) Ecosystem-specific selection pressures revealed through comparative population genomics. Proc Natl Acad Sci USA 107: 18634-18639.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 18634-18639
    • Coleman, M.L.1    Chisholm, S.W.2
  • 13
    • 34247602006 scopus 로고    scopus 로고
    • Modular architecture of the T4 phage superfamily: a conserved core genome and a plastic periphery
    • Comeau, A.M., Bertrand, C., Letarov, A., Tétart, F., and Krisch, H.M. (2007) Modular architecture of the T4 phage superfamily: a conserved core genome and a plastic periphery. Virology 362: 384-396.
    • (2007) Virology , vol.362 , pp. 384-396
    • Comeau, A.M.1    Bertrand, C.2    Letarov, A.3    Tétart, F.4    Krisch, H.M.5
  • 14
    • 78751561457 scopus 로고    scopus 로고
    • Quantifying nonvertical inheritance in the evolution of Legionella pneumophila
    • Coscollá, M., Comas, I., and González-Candelas, F. (2011) Quantifying nonvertical inheritance in the evolution of Legionella pneumophila. Mol Biol Evol 28: 985-1001.
    • (2011) Mol Biol Evol , vol.28 , pp. 985-1001
    • Coscollá, M.1    Comas, I.2    González-Candelas, F.3
  • 16
    • 31544483932 scopus 로고    scopus 로고
    • Community genomics among stratified microbial assemblages in the ocean's interior
    • DeLong, E.F., Preston, C.M., Mincer, T., Rich, V., Hallam, S.J., Frigaard, N.U., etal. (2006) Community genomics among stratified microbial assemblages in the ocean's interior. Science 311: 496-503.
    • (2006) Science , vol.311 , pp. 496-503
    • DeLong, E.F.1    Preston, C.M.2    Mincer, T.3    Rich, V.4    Hallam, S.J.5    Frigaard, N.U.6
  • 17
    • 0033178790 scopus 로고    scopus 로고
    • Comparative sequence analysis of the DNA packaging, head, and tail morphogenesis modules in the temperate cos-site Streptococcus thermophilus bacteriophage Sfi21
    • Desiere, F., Lucchini, S., and Brüssow, H. (1999) Comparative sequence analysis of the DNA packaging, head, and tail morphogenesis modules in the temperate cos-site Streptococcus thermophilus bacteriophage Sfi21. Virology 260: 244-253.
    • (1999) Virology , vol.260 , pp. 244-253
    • Desiere, F.1    Lucchini, S.2    Brüssow, H.3
  • 18
    • 0038730764 scopus 로고    scopus 로고
    • The diversity and evolution of the T4-type bacteriophages
    • Desplats, C., and Krisch, H.M. (2003) The diversity and evolution of the T4-type bacteriophages. Res Microbiol 154: 259-267.
    • (2003) Res Microbiol , vol.154 , pp. 259-267
    • Desplats, C.1    Krisch, H.M.2
  • 19
    • 79251573854 scopus 로고    scopus 로고
    • Inference of homologous recombination in bacteria using whole-genome sequences
    • Didelot, X., Lawson, D., Darling, A., and Falush, D. (2010) Inference of homologous recombination in bacteria using whole-genome sequences. Genetics 186: 1435-1449.
    • (2010) Genetics , vol.186 , pp. 1435-1449
    • Didelot, X.1    Lawson, D.2    Darling, A.3    Falush, D.4
  • 22
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar, R.C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 23
    • 0026499429 scopus 로고
    • Conservation evaluation and phylogenetic diversity
    • Faith, D.P. (1992) Conservation evaluation and phylogenetic diversity. Biol Conserv 61: 1-10.
    • (1992) Biol Conserv , vol.61 , pp. 1-10
    • Faith, D.P.1
  • 24
    • 24644448794 scopus 로고    scopus 로고
    • Marine T4-type bacteriophages, a ubiquitous component of the dark matter of the biosphere
    • Filee, J., Tetart, F., Suttle, C.A., and Krisch, H.M. (2005) Marine T4-type bacteriophages, a ubiquitous component of the dark matter of the biosphere. Proc Natl Acad Sci USA 102: 12471-12476.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 12471-12476
    • Filee, J.1    Tetart, F.2    Suttle, C.A.3    Krisch, H.M.4
  • 25
    • 33748165572 scopus 로고    scopus 로고
    • A selective barrier to horizontal gene transfer in the T4-type bacteriophages that has preserved a core genome with the viral replication and structural genes
    • Filee, J., Bapteste, E., Susko, E., and Krisch, H.M. (2006) A selective barrier to horizontal gene transfer in the T4-type bacteriophages that has preserved a core genome with the viral replication and structural genes. Mol Biol Evol 23: 1688-1696.
    • (2006) Mol Biol Evol , vol.23 , pp. 1688-1696
    • Filee, J.1    Bapteste, E.2    Susko, E.3    Krisch, H.M.4
  • 26
    • 0033542481 scopus 로고    scopus 로고
    • Marine viruses and their biogeochemical and ecological effects
    • Fuhrman, J.A. (1999) Marine viruses and their biogeochemical and ecological effects. Nature 399: 541-548.
    • (1999) Nature , vol.399 , pp. 541-548
    • Fuhrman, J.A.1
  • 27
    • 0031776161 scopus 로고    scopus 로고
    • Occurrence of a sequence in marine cyanophages similar to that of T4 g20 and its application to PCR-based detection and quantification techniques
    • Fuller, N.J., Wilson, W.H., Joint, I.R., and Mann, N.H. (1998) Occurrence of a sequence in marine cyanophages similar to that of T4 g20 and its application to PCR-based detection and quantification techniques. Appl Environ Microbiol 64: 2051-2060.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 2051-2060
    • Fuller, N.J.1    Wilson, W.H.2    Joint, I.R.3    Mann, N.H.4
  • 28
    • 0035949626 scopus 로고    scopus 로고
    • A conserved genetic module that encodes the major virion components in both the coliphage T4 and the marine cyanophage S-PM2
    • Hambly, E., Tetart, F., Desplats, C., Wilson, W.H., Krisch, H.M., and Mann, N.H. (2001) A conserved genetic module that encodes the major virion components in both the coliphage T4 and the marine cyanophage S-PM2. Proc Natl Acad Sci USA 98: 11411-11416.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 11411-11416
    • Hambly, E.1    Tetart, F.2    Desplats, C.3    Wilson, W.H.4    Krisch, H.M.5    Mann, N.H.6
  • 29
    • 66649092982 scopus 로고    scopus 로고
    • Carrying photosynthesis genes increases ecological fitness of cyanophage in silico
    • Hellweger, F.L. (2009) Carrying photosynthesis genes increases ecological fitness of cyanophage in silico. Environ Microbiol 11: 1386-1394.
    • (2009) Environ Microbiol , vol.11 , pp. 1386-1394
    • Hellweger, F.L.1
  • 30
    • 0242323595 scopus 로고    scopus 로고
    • Bacteriophage genomics
    • Hendrix, R.W. (2003) Bacteriophage genomics. Curr Opin Microbiol 6: 506-511.
    • (2003) Curr Opin Microbiol , vol.6 , pp. 506-511
    • Hendrix, R.W.1
  • 31
    • 0033514996 scopus 로고    scopus 로고
    • Evolutionary relationships among diverse bacteriophages andprophages: all the world's a phage
    • Hendrix, R.W., Smith, M.C.M., Burns, R.N., Ford, M.E., and Hatfull, G.F. (1999) Evolutionary relationships among diverse bacteriophages andprophages: all the world's a phage. Proc Natl Acad Sci USA 96: 2192-2197.
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 2192-2197
    • Hendrix, R.W.1    Smith, M.C.M.2    Burns, R.N.3    Ford, M.E.4    Hatfull, G.F.5
  • 32
    • 13744252890 scopus 로고    scopus 로고
    • MAFFT version 5: improvement in accuracy of multiple sequence aligment
    • Katoh, K., Kuma, K., Toh, H., and Miyata, T. (2005) MAFFT version 5: improvement in accuracy of multiple sequence aligment. Nucleic Acids Res 33: 511-518.
    • (2005) Nucleic Acids Res , vol.33 , pp. 511-518
    • Katoh, K.1    Kuma, K.2    Toh, H.3    Miyata, T.4
  • 34
    • 78651065709 scopus 로고    scopus 로고
    • Family level phylogenies reveal modes of macroevolution in RNA viruses
    • Kitchen, A., Shackelton, L.A., and Holmes, E.C. (2011) Family level phylogenies reveal modes of macroevolution in RNA viruses. Proc Natl Acad Sci USA 108: 238-243.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 238-243
    • Kitchen, A.1    Shackelton, L.A.2    Holmes, E.C.3
  • 37
    • 65549114090 scopus 로고    scopus 로고
    • The interplay of homologous recombination and horizontal gene transfer in bacterial speciation
    • Gogarten, M.B., Gogarten, J.P., and Olendzenski, L. (eds). New York: Humana Press
    • Lawrence, J.G., and Retchless, A.C. (2009) The interplay of homologous recombination and horizontal gene transfer in bacterial speciation. In Horizontal Gene Transfer: Genomes in Flux. Gogarten, M.B., Gogarten, J.P., and Olendzenski, L. (eds). New York: Humana Press, pp. 29-53.
    • (2009) Horizontal Gene Transfer: Genomes in Flux , pp. 29-53
    • Lawrence, J.G.1    Retchless, A.C.2
  • 38
    • 1342271382 scopus 로고    scopus 로고
    • From gene trees to organismal phylogeny in prokaryotes:the case of the gamma-Proteobacteria
    • Lerat, E., Daubin, V., and Moran, N.A. (2003) From gene trees to organismal phylogeny in prokaryotes:the case of the gamma-Proteobacteria. PLoS Biol 1: E19.
    • (2003) PLoS Biol , vol.1
    • Lerat, E.1    Daubin, V.2    Moran, N.A.3
  • 40
    • 34548513271 scopus 로고    scopus 로고
    • Genome-wide expression dynamics of a marine virus and host reveal features of co-evolution
    • Lindell, D., Jaffe, J.D., Coleman, M.L., Futschik, M.E., Axmann, I.M., Rector, T., etal. (2007) Genome-wide expression dynamics of a marine virus and host reveal features of co-evolution. Nature 449: 83-86.
    • (2007) Nature , vol.449 , pp. 83-86
    • Lindell, D.1    Jaffe, J.D.2    Coleman, M.L.3    Futschik, M.E.4    Axmann, I.M.5    Rector, T.6
  • 41
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: a new phylogenetic method for comparing microbial communities
    • Lozupone, C., and Knight, R. (2005) UniFrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microbiol 71: 8228-8235.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 42
    • 33748713890 scopus 로고    scopus 로고
    • UniFrac an online tool for comparing microbial community diversity in a phylogenetic context
    • Lozupone, C., Hamady, H., and Knight, R. (2006) UniFrac an online tool for comparing microbial community diversity in a phylogenetic context. BMC Bioinformatics 7: 371-385.
    • (2006) BMC Bioinformatics , vol.7 , pp. 371-385
    • Lozupone, C.1    Hamady, H.2    Knight, R.3
  • 43
    • 0035403340 scopus 로고    scopus 로고
    • Distribution, isolation, host specificity, and diversity of cyanophages infecting marine Synechococcus spp. in river estuaries
    • Lu, J., Chen, F., and Hodson, R.E. (2001) Distribution, isolation, host specificity, and diversity of cyanophages infecting marine Synechococcus spp. in river estuaries. Appl Environ Microbiol 67: 3285-3290.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 3285-3290
    • Lu, J.1    Chen, F.2    Hodson, R.E.3
  • 44
    • 0035972889 scopus 로고    scopus 로고
    • Sexual isolation in bacteria
    • Majewski, J. (2001) Sexual isolation in bacteria. FEMS Microbiol Lett 199: 161-169.
    • (2001) FEMS Microbiol Lett , vol.199 , pp. 161-169
    • Majewski, J.1
  • 46
    • 17644410730 scopus 로고    scopus 로고
    • The genome of S-PM2, a 'photosynthetic' T4-type bacteriophage that infects marine Synechococcus
    • Mann, N.H., Clokie, M.R., Millard, A., Cook, A., Wilson, W.H., Wheatley, P.J., etal. (2005) The genome of S-PM2, a 'photosynthetic' T4-type bacteriophage that infects marine Synechococcus. J Bacteriol 187: 3188-3200.
    • (2005) J Bacteriol , vol.187 , pp. 3188-3200
    • Mann, N.H.1    Clokie, M.R.2    Millard, A.3    Cook, A.4    Wilson, W.H.5    Wheatley, P.J.6
  • 47
    • 70350459198 scopus 로고    scopus 로고
    • Recombination and microdiversity in coastal marine cyanophages
    • Marston, F.M., and Amrich, C.G. (2009) Recombination and microdiversity in coastal marine cyanophages. Environ Microbiol 11: 2893-2903.
    • (2009) Environ Microbiol , vol.11 , pp. 2893-2903
    • Marston, F.M.1    Amrich, C.G.2
  • 48
    • 0043031198 scopus 로고    scopus 로고
    • Genetic diversity and temporal variation in the cyanophage community infecting marine Synechococcus species in Rhode Island's coastal waters
    • Marston, M.F., and Sallee, J.L. (2003) Genetic diversity and temporal variation in the cyanophage community infecting marine Synechococcus species in Rhode Island's coastal waters. Appl Environ Microbiol 69: 4639-4647.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 4639-4647
    • Marston, M.F.1    Sallee, J.L.2
  • 49
    • 0036324293 scopus 로고    scopus 로고
    • Phylogenetic approaches for describing and comparing the diversity of microbial communities
    • Martin, A.P. (2002) Phylogenetic approaches for describing and comparing the diversity of microbial communities. Appl Environ Microbiol 68: 3673-3682.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 3673-3682
    • Martin, A.P.1
  • 50
    • 0033824415 scopus 로고    scopus 로고
    • RDP: detection of recombination amongst aligned sequences
    • Martin, D., and Rybicki, E. (2000) RDP: detection of recombination amongst aligned sequences. Bioinformatics 16: 562-563.
    • (2000) Bioinformatics , vol.16 , pp. 562-563
    • Martin, D.1    Rybicki, E.2
  • 51
    • 68049128027 scopus 로고    scopus 로고
    • Recombination detection and analysis using RDP3
    • Martin, D.P. (2009) Recombination detection and analysis using RDP3. Methods Mol Biol 537: 185-205.
    • (2009) Methods Mol Biol , vol.537 , pp. 185-205
    • Martin, D.P.1
  • 52
    • 3342929288 scopus 로고    scopus 로고
    • Genetic organization of the psbAD region in phages infecting marine Synechococcus strains
    • Millard, A., Clokie, M.R., Shub, D.A., and Mann, N.H. (2004) Genetic organization of the psbAD region in phages infecting marine Synechococcus strains. Proc Natl Acad Sci USA 101: 11007-11012.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 11007-11012
    • Millard, A.1    Clokie, M.R.2    Shub, D.A.3    Mann, N.H.4
  • 53
    • 69949104491 scopus 로고    scopus 로고
    • Comparative genomics of marine cyanomyoviruses reveals the widespread occurrence of Synechococcus host genes localized to a hyperplastic region: implications for mechanisms of cyanophage evolution
    • Millard, A.D., Zwirglmaier, K., Downey, M.J., Mann, N.H., and Scanlan, D.J. (2009) Comparative genomics of marine cyanomyoviruses reveals the widespread occurrence of Synechococcus host genes localized to a hyperplastic region: implications for mechanisms of cyanophage evolution. Environ Microbiol 11: 2370-2387.
    • (2009) Environ Microbiol , vol.11 , pp. 2370-2387
    • Millard, A.D.1    Zwirglmaier, K.2    Downey, M.J.3    Mann, N.H.4    Scanlan, D.J.5
  • 55
    • 0041386480 scopus 로고    scopus 로고
    • Complete genome sequence of the broad-host-range vibriophage KVP40: comparative genomics of a T4-related bacteriophage
    • Miller, E.S., Heidelberg, J.F., Eisen, J.A., Nelson, W.C., Durkin, A.S., Ciecko, A., etal. (2003b) Complete genome sequence of the broad-host-range vibriophage KVP40: comparative genomics of a T4-related bacteriophage. J Bacteriol 185: 5220-5233.
    • (2003) J Bacteriol , vol.185 , pp. 5220-5233
    • Miller, E.S.1    Heidelberg, J.F.2    Eisen, J.A.3    Nelson, W.C.4    Durkin, A.S.5    Ciecko, A.6
  • 56
    • 0032426554 scopus 로고    scopus 로고
    • Recombination and recombination-dependent DNA replication in bacteriophage T4
    • Mosig, G. (1998) Recombination and recombination-dependent DNA replication in bacteriophage T4. Annu Rev Genet 32: 379-413.
    • (1998) Annu Rev Genet , vol.32 , pp. 379-413
    • Mosig, G.1
  • 57
    • 0035902485 scopus 로고    scopus 로고
    • Two recombination-dependent DNA replication pathways of bacteriophage T4, and their roles in mutagenesis and horizontal gene transfer
    • Mosig, G., Gewin, J., Luder, A., Colowick, N., and Vo, D. (2001) Two recombination-dependent DNA replication pathways of bacteriophage T4, and their roles in mutagenesis and horizontal gene transfer. Proc Natl Acad Sci USA 98: 8306-8311.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 8306-8311
    • Mosig, G.1    Gewin, J.2    Luder, A.3    Colowick, N.4    Vo, D.5
  • 58
    • 0037025202 scopus 로고    scopus 로고
    • Biochemistry. DNA building block reinvented
    • Murzin, A.G. (2002) Biochemistry. DNA building block reinvented. Science 297: 61-62.
    • (2002) Science , vol.297 , pp. 61-62
    • Murzin, A.G.1
  • 59
    • 0037025191 scopus 로고    scopus 로고
    • An alternative flavin-dependent mechanism for thymidylate synthesis
    • Myllykallio, H., Lipowski, G., Leduc, D., Filee, J., Forterre, P., and Liebl, U. (2002) An alternative flavin-dependent mechanism for thymidylate synthesis. Science 297: 105-107.
    • (2002) Science , vol.297 , pp. 105-107
    • Myllykallio, H.1    Lipowski, G.2    Leduc, D.3    Filee, J.4    Forterre, P.5    Liebl, U.6
  • 61
    • 0033590220 scopus 로고    scopus 로고
    • Possible emergence of new geminiviruses by frequent recombination
    • Padidam, M., Sawyer, S., and Fauquet, C.M. (1999) Possible emergence of new geminiviruses by frequent recombination. Virology 265: 218-225.
    • (1999) Virology , vol.265 , pp. 218-225
    • Padidam, M.1    Sawyer, S.2    Fauquet, C.M.3
  • 64
    • 0035923699 scopus 로고    scopus 로고
    • Evaluation of methods for detecting recombination from DNA sequences: computer simulations
    • Posada, D., and Crandall, K.A. (2001) Evaluation of methods for detecting recombination from DNA sequences: computer simulations. Proc Natl Acad Sci USA 98: 13757-13762.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 13757-13762
    • Posada, D.1    Crandall, K.A.2
  • 65
    • 0036838138 scopus 로고    scopus 로고
    • The dilemma of phage taxonomy illustrated by comparative genomics of Sfi21-like Siphoviridae in lactic acid bacteria
    • Proux, C., van Sinderen, D., Suarez, J., Garcia, P., Ladero, V., Fitzgerald, G.F., etal. (2002) The dilemma of phage taxonomy illustrated by comparative genomics of Sfi21-like Siphoviridae in lactic acid bacteria. J Bacteriol 184: 6026-6023.
    • (2002) J Bacteriol , vol.184 , pp. 6026-6023
    • Proux, C.1    van Sinderen, D.2    Suarez, J.3    Garcia, P.4    Ladero, V.5    Fitzgerald, G.F.6
  • 67
    • 0036200876 scopus 로고    scopus 로고
    • Resolution of Prochlorococcus and Synechococcus ecotypes by using 16S-23S ribosomal DNA internal transcribed spacer sequences
    • Rocap, G., Distel, D.L., Waterbury, J.B., and Chisholm, S.W. (2002) Resolution of Prochlorococcus and Synechococcus ecotypes by using 16S-23S ribosomal DNA internal transcribed spacer sequences. Appl Environ Microbiol 68: 1180-1191.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 1180-1191
    • Rocap, G.1    Distel, D.L.2    Waterbury, J.B.3    Chisholm, S.W.4
  • 68
    • 0037453721 scopus 로고    scopus 로고
    • Global phage diversity
    • Rohwer, F. (2003) Global phage diversity. Cell 113: 141.
    • (2003) Cell , vol.113 , pp. 141
    • Rohwer, F.1
  • 69
    • 0036330981 scopus 로고    scopus 로고
    • The phage proteomic tree: a genome-based taxonomy for phage
    • Rohwer, F., and Edwards, R. (2002) The phage proteomic tree: a genome-based taxonomy for phage. J Bacteriol 184: 4529-4535.
    • (2002) J Bacteriol , vol.184 , pp. 4529-4535
    • Rohwer, F.1    Edwards, R.2
  • 71
    • 0022689021 scopus 로고
    • Homologous recombination in Escherichia coli: dependence on substrate length and homology
    • Shen, P., and Huang, H.V. (1986) Homologous recombination in Escherichia coli: dependence on substrate length and homology. Genetics 112: 441-457.
    • (1986) Genetics , vol.112 , pp. 441-457
    • Shen, P.1    Huang, H.V.2
  • 72
    • 0032766857 scopus 로고    scopus 로고
    • Multiple comparisons of log-likelihoods with applications to phylogenetic inference
    • Shimodaira, H., and Hasegawa, M. (1999) Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol Biol Evol 16: 1114-1116.
    • (1999) Mol Biol Evol , vol.16 , pp. 1114-1116
    • Shimodaira, H.1    Hasegawa, M.2
  • 73
    • 0036139287 scopus 로고    scopus 로고
    • CONSEL: for assessing the confidence of phylogenetic tree selection
    • Shimodaira, H., and Hasegawa, M. (2001) CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics 17: 1246-1247.
    • (2001) Bioinformatics , vol.17 , pp. 1246-1247
    • Shimodaira, H.1    Hasegawa, M.2
  • 74
    • 12244252269 scopus 로고    scopus 로고
    • Nearly identical bacteriophage structural gene sequences are widely distributed in both marine and freshwater environments
    • Short, C.M., and Suttle, C.A. (2005) Nearly identical bacteriophage structural gene sequences are widely distributed in both marine and freshwater environments. Appl Environ Microbiol 71: 480-486.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 480-486
    • Short, C.M.1    Suttle, C.A.2
  • 75
    • 0026708873 scopus 로고
    • Analyzing the mosaic structure of genes
    • Smith, M. (1992) Analyzing the mosaic structure of genes. J Mol Evol 34: 126-129.
    • (1992) J Mol Evol , vol.34 , pp. 126-129
    • Smith, M.1
  • 76
    • 0032900532 scopus 로고    scopus 로고
    • Genome phylogeny based on gene content
    • Snel, B., Bork, P., and Huynen, M.A. (1999) Genome phylogeny based on gene content. Nat Genet 21: 108-110.
    • (1999) Nat Genet , vol.21 , pp. 108-110
    • Snel, B.1    Bork, P.2    Huynen, M.A.3
  • 77
    • 14644397888 scopus 로고    scopus 로고
    • RaxML-iii: a fast program for maximum likelihood-based inference of large phylogenetic trees
    • Stamatakis, A., Ludwig, T., and Meier, H. (2005) RaxML-iii: a fast program for maximum likelihood-based inference of large phylogenetic trees. Bioinformatics 21: 456-463.
    • (2005) Bioinformatics , vol.21 , pp. 456-463
    • Stamatakis, A.1    Ludwig, T.2    Meier, H.3
  • 78
    • 0041375471 scopus 로고    scopus 로고
    • Cyanophages infecting the oceanic cyanobacterium Prochlorococcus
    • Sullivan, M.B., Waterbury, J.B., and Chisholm, S.W. (2003) Cyanophages infecting the oceanic cyanobacterium Prochlorococcus. Nature 424: 1047-1051.
    • (2003) Nature , vol.424 , pp. 1047-1051
    • Sullivan, M.B.1    Waterbury, J.B.2    Chisholm, S.W.3
  • 79
    • 21344461027 scopus 로고    scopus 로고
    • Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations
    • Sullivan, M.B., Coleman, M., Weigele, P., Rohwer, F., and Chisholm, S.W. (2005) Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations. PLoS Biol 3: e144.
    • (2005) PLoS Biol , vol.3
    • Sullivan, M.B.1    Coleman, M.2    Weigele, P.3    Rohwer, F.4    Chisholm, S.W.5
  • 80
    • 33747369803 scopus 로고    scopus 로고
    • Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts
    • Sullivan, M.B., Lindell, D., Lee, J.A., Thompson, L.R., Bielawski, J.P., and Chisholm, S.W. (2006) Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts. PLoS Biol 4: e234.
    • (2006) PLoS Biol , vol.4
    • Sullivan, M.B.1    Lindell, D.2    Lee, J.A.3    Thompson, L.R.4    Bielawski, J.P.5    Chisholm, S.W.6
  • 82
    • 78249280297 scopus 로고    scopus 로고
    • Genomic analysis of oceanic cyanobacterial myoviruses compared to T4-like myoviruses from diverse hosts and environments
    • Sullivan, M.B., Huang, K., Ignacio-Espinoza, J.C., Berlin, A.M., Kelly, L., Weigele, P.R., etal. (2010) Genomic analysis of oceanic cyanobacterial myoviruses compared to T4-like myoviruses from diverse hosts and environments. Environ Microbiol 12: 3035-3305.
    • (2010) Environ Microbiol , vol.12 , pp. 3035-3305
    • Sullivan, M.B.1    Huang, K.2    Ignacio-Espinoza, J.C.3    Berlin, A.M.4    Kelly, L.5    Weigele, P.R.6
  • 83
    • 25144506135 scopus 로고    scopus 로고
    • Viruses in the sea
    • Suttle, C.A. (2005) Viruses in the sea. Nature 437: 356-361.
    • (2005) Nature , vol.437 , pp. 356-361
    • Suttle, C.A.1
  • 84
    • 34548792911 scopus 로고    scopus 로고
    • Marine viruses - major players in the global ecosystem
    • Suttle, C.A. (2007) Marine viruses - major players in the global ecosystem. Nat Rev Microbiol 5: 801-812.
    • (2007) Nat Rev Microbiol , vol.5 , pp. 801-812
    • Suttle, C.A.1
  • 85
    • 0027802137 scopus 로고
    • Marine cyanophages infecting oceanic and coastal strains of Synechococcus: abundance, morphology, cross-infectivity and growth characteristics
    • Suttle, C.A., and Chan, A.M. (1993) Marine cyanophages infecting oceanic and coastal strains of Synechococcus: abundance, morphology, cross-infectivity and growth characteristics. Mar Ecol Prog Ser 92: 99-109.
    • (1993) Mar Ecol Prog Ser , vol.92 , pp. 99-109
    • Suttle, C.A.1    Chan, A.M.2
  • 86
    • 19444376568 scopus 로고    scopus 로고
    • The Calvin cycle in cyanobacteria is regulated by CP12 via the NAD(H)/NADP(H) ratio under light/dark conditions
    • Tamoi, M., Miyazaki, T., Fukamizo, T., and Shigeoka, S. (2005) The Calvin cycle in cyanobacteria is regulated by CP12 via the NAD(H)/NADP(H) ratio under light/dark conditions. Plant J 42: 504-513.
    • (2005) Plant J , vol.42 , pp. 504-513
    • Tamoi, M.1    Miyazaki, T.2    Fukamizo, T.3    Shigeoka, S.4
  • 87
    • 0035180718 scopus 로고    scopus 로고
    • Phylogeny of the major head and tail genes of the wide-ranging T4-type bacteriophages
    • Tétart, F., Desplats, C., Kutateladze, M., Monod, C., Ackermann, H.W., and Krisch, H.M. (2001) Phylogeny of the major head and tail genes of the wide-ranging T4-type bacteriophages. J Bacteriol 183: 358-366.
    • (2001) J Bacteriol , vol.183 , pp. 358-366
    • Tétart, F.1    Desplats, C.2    Kutateladze, M.3    Monod, C.4    Ackermann, H.W.5    Krisch, H.M.6
  • 88
    • 80053624997 scopus 로고    scopus 로고
    • Phage auxiliary metabolic genes and the redirection of cyanobacterial host carbon metabolism
    • Thompson, L.R., Zeng, Q., Kelly, L., Huang, K.H., Coleman, M.L., Singer, A.U., etal. (2011) Phage auxiliary metabolic genes and the redirection of cyanobacterial host carbon metabolism. Proc Natl Acad Sci USA 108: 757-764.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 757-764
    • Thompson, L.R.1    Zeng, Q.2    Kelly, L.3    Huang, K.H.4    Coleman, M.L.5    Singer, A.U.6
  • 89
    • 0027329223 scopus 로고
    • Resistance to co-occurring phages enables marine Synechococcus communities to coexist with cyanophage abundant in seawater
    • Waterbury, J.B., and Valois, F.W. (1993) Resistance to co-occurring phages enables marine Synechococcus communities to coexist with cyanophage abundant in seawater. Appl Environ Microbiol 59: 3393-3399.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 3393-3399
    • Waterbury, J.B.1    Valois, F.W.2
  • 90
    • 0033929368 scopus 로고    scopus 로고
    • Exploring the phylogenetic structure of ecological communities: an example for rain forest trees
    • Webb, C.O. (2000) Exploring the phylogenetic structure of ecological communities: an example for rain forest trees. Am Nat 156: 145-145.
    • (2000) Am Nat , vol.156 , pp. 145-145
    • Webb, C.O.1
  • 91
    • 34250170456 scopus 로고    scopus 로고
    • Genomic and structural analysis of Syn9, a cyanophage infecting marine Prochlorococcus and Synechococcus
    • Weigele, P.R., Pope, W.H., Pedulla, M.L., Houtz, J.M., Smith, A.L., Conway, J.F., etal. (2007) Genomic and structural analysis of Syn9, a cyanophage infecting marine Prochlorococcus and Synechococcus. Environ Microbiol 9: 1675-1695.
    • (2007) Environ Microbiol , vol.9 , pp. 1675-1695
    • Weigele, P.R.1    Pope, W.H.2    Pedulla, M.L.3    Houtz, J.M.4    Smith, A.L.5    Conway, J.F.6
  • 92
    • 0842266354 scopus 로고    scopus 로고
    • Are viruses driving microbial diversification and diversity?
    • Weinbauer, M.G., and Rassoulzadegan, F. (2004) Are viruses driving microbial diversification and diversity? Environ Microbiol 6: 1-11.
    • (2004) Environ Microbiol , vol.6 , pp. 1-11
    • Weinbauer, M.G.1    Rassoulzadegan, F.2
  • 93
    • 33746042196 scopus 로고    scopus 로고
    • Marine and freshwater cyanophages in a Laurentian Great Lake: evidence from infectivity assays and molecular analyses of g20 genes
    • Wilhelm, S.W., Carberry, M.J., Eldridge, M.L., Poorvin, L., Saxton, M.A., and Doblin, M.A. (2006) Marine and freshwater cyanophages in a Laurentian Great Lake: evidence from infectivity assays and molecular analyses of g20 genes. Appl Environ Microbiol 72: 4957-4963.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 4957-4963
    • Wilhelm, S.W.1    Carberry, M.J.2    Eldridge, M.L.3    Poorvin, L.4    Saxton, M.A.5    Doblin, M.A.6
  • 94
    • 44849140662 scopus 로고    scopus 로고
    • The Sorcerer II Global Ocean Sampling Expedition: metagenomic characterization of viruses within aquatic microbial samples
    • Williamson, S.J., Rusch, D.B., Yooseph, S., Halpern, A.L., Heidelberg, K.B., Glass, J.I., etal. (2008) The Sorcerer II Global Ocean Sampling Expedition: metagenomic characterization of viruses within aquatic microbial samples. PLoS ONE 3: e1456.
    • (2008) PLoS ONE , vol.3
    • Williamson, S.J.1    Rusch, D.B.2    Yooseph, S.3    Halpern, A.L.4    Heidelberg, K.B.5    Glass, J.I.6
  • 95
    • 0027376914 scopus 로고
    • Isolation and molecular characterization of five marine cyanophages propagated on Synechococcus sp. strain WH7803
    • Wilson, W.H., Joint, I.R., Carr, N.G., and Mann, N.H. (1993) Isolation and molecular characterization of five marine cyanophages propagated on Synechococcus sp. strain WH7803. Appl Environ Microbiol 59: 3736-3743.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 3736-3743
    • Wilson, W.H.1    Joint, I.R.2    Carr, N.G.3    Mann, N.H.4
  • 96
    • 33947235074 scopus 로고    scopus 로고
    • The sorcerer II global ocean sampling expedition: expanding the universe of protein families
    • Yooseph, S., Sutton, G., Rusch, D.B., Halpern, A.L., Williamson, S.J., Remington, K., etal. (2007) The sorcerer II global ocean sampling expedition: expanding the universe of protein families. PLoS Biol 5: e16.
    • (2007) PLoS Biol , vol.5
    • Yooseph, S.1    Sutton, G.2    Rusch, D.B.3    Halpern, A.L.4    Williamson, S.J.5    Remington, K.6
  • 97
    • 65249154859 scopus 로고    scopus 로고
    • Choreography of the transcriptome, photophysiology, and cell cycle of a minimal photoautotroph, Prochlorococcus
    • Zinser, E.R., Lindell, D., Johnson, Z.I., Futschik, M.E., Steglich, C., Coleman, M.L., etal. (2009) Choreography of the transcriptome, photophysiology, and cell cycle of a minimal photoautotroph, Prochlorococcus. PLoS ONE 4: e5135.
    • (2009) PLoS ONE , vol.4
    • Zinser, E.R.1    Lindell, D.2    Johnson, Z.I.3    Futschik, M.E.4    Steglich, C.5    Coleman, M.L.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.