Allelic diversity at the DLA-88 locus in Golden Retriever and Boxer breeds is limited

Tissue Antigens

Volumn 80, Issue 2, 2012, Pages 175-183

  Ross, P ^a   Buntzman, A S ^b   Vincent, B G ^c   Grover, E N ^a   Gojanovich, G S ^a   Collins, E J ^c   Frelinger, J A ^b   Hess, P R ^a  

^a NORTH CAROLINA STATE UNIVERSITY   (United States)

^b UNIVERSITY OF ARIZONA COLLEGE OF MEDICINE   (United States)

^c UNIVERSITY OF NORTH CAROLINA SCHOOL OF MEDICINE   (United States)

Author keywords

Breeds; Canine; Class I genes; Major histocompatibility complex; Polymorphisms

Indexed keywords

DOG LEUKOCYTE ANTIGEN 88; LEUKOCYTE ANTIGEN; UNCLASSIFIED DRUG;

ARTICLE; BREED DIFFERENCE; CD8+ T LYMPHOCYTE; CONTROLLED STUDY; DOG; DOMINANT GENE; FEMALE; GENE IDENTIFICATION; GENE LOCUS; GENETIC POLYMORPHISM; GENETIC VARIABILITY; MALE; NONHUMAN; PREVALENCE; PRIORITY JOURNAL;

ALLELES; AMINO ACID SEQUENCE; ANIMALS; BREEDING; CD8-POSITIVE T-LYMPHOCYTES; DOGS; GENE FREQUENCY; GENETIC LOCI; HAPLOTYPES; HISTOCOMPATIBILITY ANTIGENS CLASS I; HOMOZYGOTE; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMORPHISM, GENETIC; SEQUENCE ALIGNMENT;

CANIS FAMILIARIS;

EID: 84864331894     PISSN: 00012815     EISSN: 13990039     Source Type: Journal    
DOI: 10.1111/j.1399-0039.2012.01889.x     Document Type: Article

References (60)

1. Robinson J, Waller MJ, Parham P et al. IMGT/HLA and IMGT/MHC: sequence databases for the study of the major histocompatibility complex. Nucleic Acids Res 2003: 31: 311-4.
2. Parham P, Adams EJ, Arnett KL. The origins of HLA-A, B, C polymorphism. Immunol Rev 1995: 143: 141-80.
3. Messaoudi I, Guevara Patino JA, Dyall R, LeMaoult J, Nikolich-Zugich J. Direct link between mhc polymorphism, T cell avidity, and diversity in immune defense. Science 2002: 298: 1797-800.
4. Hill AV, Allsopp CE, Kwiatkowski D et al. Common west African HLA antigens are associated with protection from severe malaria. Nature 1991: 352: 595-600.
5. Siddle HV, Kreiss A, Eldridge MD et al. Transmission of a fatal clonal tumor by biting occurs due to depleted MHC diversity in a threatened carnivorous marsupial. Proc Natl Acad Sci USA 2007: 104: 16221-6.
6. Burnett RC, DeRose SA, Wagner JL, Storb R. Molecular analysis of six dog leukocyte antigen class I sequences including three complete genes, two truncated genes and one full-length processed gene. Tissue Antigens 1997: 49: 484-95.
7. Burnett RC, Geraghty DE. Structure and expression of a divergent canine class I gene. J Immunol 1995: 155: 4278-85.
8. Graumann MB, DeRose SA, Ostrander EA, Storb R. Polymorphism analysis of four canine MHC class I genes. Tissue Antigens 1998: 51: 374-81.
9. Wagner JL, Creer SA, Storb R. Dog class I gene DLA-88 histocompatibility typing by PCR-SSCP and sequencing. Tissue Antigens 2000: 55: 564-7.
10. Hardt C, Ferencik S, Tak R, Hoogerbrugge PM, Wagner V, Grosse-Wilde H. Sequence-based typing reveals a novel DLA-88 allele, DLA-88*04501, in a beagle family. Tissue Antigens 2006: 67: 163-5.
11. Venkataraman GM, Stroup P, Graves SS, Storb R. An improved method for dog leukocyte antigen 88 typing and two new major histocompatibility complex class I alleles, DLA-88*01101 and DLA-88*01201. Tissue Antigens 2007: 70: 53-7.
12. Vila C, Seddon J, Ellegren H. Genes of domestic mammals augmented by backcrossing with wild ancestors. Trends Genet 2005: 21: 214-8.
13. Pang JF, Kluetsch C, Zou XJ et al. mtDNA data indicate a single origin for dogs south of Yangtze River, less than 16, 300 years ago, from numerous wolves. Mol Biol Evol 2009: 26: 2849-64.
14. Kennedy LJ, Barnes A, Short A et al. Canine DLA diversity: 1. New alleles and haplotypes. Tissue Antigens 2007: 69 (Suppl 1): 272-88.
15. Kennedy LJ, Barnes A, Happ GM et al. Extensive interbreed, but minimal intrabreed, variation of DLA class II alleles and haplotypes in dogs. Tissue Antigens 2002: 59: 194-204.
16. Angles JM, Kennedy LJ, Pedersen NC. Frequency and distribution of alleles of canine MHC-II DLA-DQB1, DLA-DQA1 and DLA-DRB1 in 25 representative American Kennel Club breeds. Tissue Antigens 2005: 66: 173-84.
17. Kennedy LJ, Carter SD, Barnes A et al. Interbreed variation of DLA-DRB1, DQA1 alleles and haplotypes in the dog. Vet Immunol Immunopathol 1999: 69: 101-11.
18. Gonzalez-Galarza FF, Christmas S, Middleton D, Jones AR. Allele frequency net: a database and online repository for immune gene frequencies in worldwide populations. Nucleic Acids Res 2011: 39: D913-9.
19. Davis MW. A plasmid Editor (ApE). 2011.
20. Ellis SA, Bontrop RE, Antczak DF et al. ISAG/IUIS-VIC Comparative MHC Nomenclature Committee report, 2005. Immunogenetics 2006: 57: 953-8.
21. Bird RC, Deinnocentes P, Lenz S, Thacker EE, Curiel DT, Smith BF. An allogeneic hybrid-cell fusion vaccine against canine mammary cancer. Vet Immunol Immunopathol 2008: 123: 289-304.
22. Wagner JL, Sarmiento UM, Storb R. Cellular, serological, and molecular polymorphism of the class I and class II loci of the canine major histocompatibility complex. Tissue Antigens 2002: 59: 205-10.
23. Wellman ML, Krakowka S, Jacobs RM, Kociba GJ. A macrophage-monocyte cell line from a dog with malignant histiocytosis. In Vitro Cell Dev Biol 1988: 24: 223-9.
24. Maloney S, Smith A, Furst DE et al. Microchimerism of maternal origin persists into adult life. J Clin Invest 1999: 104: 41-7.
25. Glass EJ, Oliver RA, Russell GC. Duplicated DQ haplotypes increase the complexity of restriction element usage in cattle. J Immunol 2000: 165: 134-8.
26. Villegas-Castagnasso EE, Diaz S, Giovambattista G, Dulout FN, Peral-Garcia P. Analysis of ELA-DQB exon 2 polymorphism in Argentine Creole horses by PCR-RFLP and PCR-SSCP. J Vet Med A Physiol Pathol Clin Med 2003: 50: 280-5.
27. Saper MA, Bjorkman PJ, Wiley DC. Refined structure of the human histocompatibility antigen HLA-A2 at 2.6 A resolution. J Mol Biol 1991: 219: 277-319.
28. Warburton RJ, Matsui M, Rowland-Jones SL et al. Mutation of the alpha 2 domain disulfide bridge of the class I molecule HLA-A*0201. Effect on maturation and peptide presentation. Hum Immunol 1994: 39: 261-71.
29. Gu X, Nei M. Locus specificity of polymorphic alleles and evolution by a birth-and-death process in mammalian MHC genes. Mol Biol Evol 1999: 16: 147-56.
30. Ando A, Kawata H, Shigenari A et al. Genetic polymorphism of the swine major histocompatibility complex (SLA) class I genes, SLA-1, -2 and -3. Immunogenetics 2003: 55: 583-93.
31. Tallmadge RL, Campbell JA, Miller DC, Antczak DF. Analysis of MHC class I genes across horse MHC haplotypes. Immunogenetics 2010: 62: 159-72.
32. Foss V. Golden Retrievers Today. New York: Prentice Hall/Macmillan Co., 1994, 7-11.
33. Walker JH. The Boxer Handbook. Hauppauge: Barron's, 2000, 1-3.
34. Babiuk S, Horseman B, Zhang C et al. BoLA class I allele diversity and polymorphism in a herd of cattle. Immunogenetics 2007: 59: 167-76.
35. Pokorny I, Sharma R, Goyal SP, Mishra S, Tiedemann R. MHC class I and MHC class II DRB gene variability in wild and captive Bengal tigers (Panthera tigris tigris). Immunogenetics 2010: 62: 667-79.
36. Allendorf FW. Genetic drift and the loss of alleles versus heterozygosity. Zoo Biol 1986: 5: 181-90.
37. Jost L. Partitioning diversity into independent alpha and beta components. Ecology 2007: 88: 2427-39.
38. Vincent BG, Young EF, Buntzman AS et al. Toxin-coupled MHC class I tetramers can specifically ablate autoreactive CD8+ T cells and delay diabetes in nonobese diabetic mice. J Immunol 2010: 184: 4196-204.
39. Egeland T, Salas A. Estimating haplotype frequency and coverage of databases. PLoS One 2008: 3: e3988.
40. Chao A. Species estimation and applications. In: Balakrishnan N, Read CB, Vidakovic B, eds. Encyclopedia of Statistical Sciences, 2nd edn. New York: Wiley, 2005, 7907-16.
41. Chao A, Shen T-J. Program SPADE (Species Prediction And Diversity Estimation). Program and User's Guide published at 2010.
42. Lindblad-Toh K, Wade CM, Mikkelsen TS et al. Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature 2005: 438: 803-19.
43. Parker HG, Kim LV, Sutter NB et al. Genetic structure of the purebred domestic dog. Science 2004: 304: 1160-4.
44. Wilbe M, Sundberg K, Hansen IR et al. Increased genetic risk or protection for canine autoimmune lymphocytic thyroiditis in Giant Schnauzers depends on DLA class II genotype. Tissue Antigens 2010: 75: 712-9.
45. Wilbe M, Ziener ML, Aronsson A et al. DLA class II alleles are associated with risk for canine symmetrical lupoid onychodystrophy [corrected](SLO). PLoS One 2010: 5: e12332.
46. Kennedy LJ, Barnes A, Ollier WE, Day MJ. Association of a common dog leucocyte antigen class II haplotype with canine primary immune-mediated haemolytic anaemia. Tissue Antigens 2006: 68: 502-8.
47. Kennedy LJ, Davison LJ, Barnes A et al. Identification of susceptibility and protective major histocompatibility complex haplotypes in canine diabetes mellitus. Tissue Antigens 2006: 68: 467-76.
48. Kennedy LJ, Quarmby S, Happ GM et al. Association of canine hypothyroidism with a common major histocompatibility complex DLA class II allele. Tissue Antigens 2006: 68: 82-6.
49. Quinnell RJ, Kennedy LJ, Barnes A et al. Susceptibility to visceral leishmaniasis in the domestic dog is associated with MHC class II polymorphism. Immunogenetics 2003: 55: 23-8.
50. Angles JM, Famula TR, Pedersen NC. Uveodermatologic (VKH-like) syndrome in American Akita dogs is associated with an increased frequency of DQA1*00201. Tissue Antigens 2005: 66: 656-65.
51. Willcox JL, Pruitt AF, Suter SE. Autologous peripheral blood hematopoietic cell transplantation in dogs with B-cell lymphoma. J Vet Int Med 2012. In press.
52. Drummond AJ, Ashton B, Buxton S et al. Geneious. v.5.04 2010.
53. Tamura K, Nei M. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 1993: 10: 512-26.
54. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987: 4: 406-25.
55. Huelsenbeck JP, Dyer KA. Bayesian estimation of positively selected sites. J Mol Evol 2004: 58: 661-72.
56. Rambaut A, Drummond AJ. Tracer v1.5.2007. Available at:.
57. Blicher T, Kastrup JS, Buus S, Gajhede M. High-resolution structure of HLA-A*1101 in complex with SARS nucleocapsid peptide. Acta Crystallogr D Biol Crystallogr 2005: 61: 1031-40.
58. Arnold K, Bordoli L, Kopp J, Schwede T. The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics 2006: 22: 195-201.
59. Schwede T, Kopp J, Guex N, Peitsch MC. SWISS-MODEL: an automated protein homology-modeling server. Nucleic Acids Res 2003: 31: 3381-5.
60. Guex N, Peitsch MC. SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. Electrophoresis 1997: 18: 2714-23.