-
1
-
-
0346494829
-
SGMD: the Soybean Genomics and Microarray Database
-
Alkharouf N., Matthews B.F. SGMD: the Soybean Genomics and Microarray Database. Nucleic Acids Res. 2004, 32:1-3.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1-3
-
-
Alkharouf, N.1
Matthews, B.F.2
-
2
-
-
78049263858
-
MiRNAs in the biogenesis of trans-acting siRNAs in higher plants
-
Allen E., Howell M.D. miRNAs in the biogenesis of trans-acting siRNAs in higher plants. Semin. Cell Dev. Biol. 2010, 21:798-804.
-
(2010)
Semin. Cell Dev. Biol.
, vol.21
, pp. 798-804
-
-
Allen, E.1
Howell, M.D.2
-
3
-
-
80053304450
-
High density DNA methylation array with single CpG site resolution
-
Bibikova M., Barnes B., Tsan C., Ho V., Klotzle B., Le J.M., Delano D., Zhang L., Schroth G.P., Gunderson K.L., Fan J.B., Shen R. High density DNA methylation array with single CpG site resolution. Genomics 2011, 98:288-295.
-
(2011)
Genomics
, vol.98
, pp. 288-295
-
-
Bibikova, M.1
Barnes, B.2
Tsan, C.3
Ho, V.4
Klotzle, B.5
Le, J.M.6
Delano, D.7
Zhang, L.8
Schroth, G.P.9
Gunderson, K.L.10
Fan, J.B.11
Shen, R.12
-
4
-
-
4544252919
-
Chromatin techniques for plant cells
-
Bowler C., Benvenuto G., Laflamme P., Molino D., Probst A.V., Tariq M., Paszkowski J. Chromatin techniques for plant cells. Plant J. 2004, 39:776-789.
-
(2004)
Plant J.
, vol.39
, pp. 776-789
-
-
Bowler, C.1
Benvenuto, G.2
Laflamme, P.3
Molino, D.4
Probst, A.V.5
Tariq, M.6
Paszkowski, J.7
-
5
-
-
33749532842
-
Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes
-
Cannon S.B., Sterck L., Rombauts S., Sato S., Cheung F., Gouzy J., Wang X.H., Mudge J., Vasdewani J., Scheix T., Spannagl M., Monaghan E., Nicholson C., Humphray S.J., Schoof H., Mayer K.F.X., Rogers J., Quetier F., Oldroyd G.E., Debelle F., Cook D.R., Retzel E.F., Roe B.A., Town C.D., Tabata S., van de Peer Y., Young N.D. Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes. Proc. Natl. Acad. Sci. USA 2006, 103:14959-14964.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 14959-14964
-
-
Cannon, S.B.1
Sterck, L.2
Rombauts, S.3
Sato, S.4
Cheung, F.5
Gouzy, J.6
Wang, X.H.7
Mudge, J.8
Vasdewani, J.9
Scheix, T.10
Spannagl, M.11
Monaghan, E.12
Nicholson, C.13
Humphray, S.J.14
Schoof, H.15
Mayer, K.F.X.16
Rogers, J.17
Quetier, F.18
Oldroyd, G.E.19
Debelle, F.20
Cook, D.R.21
Retzel, E.F.22
Roe, B.A.23
Town, C.D.24
Tabata, S.25
van de Peer, Y.26
Young, N.D.27
more..
-
6
-
-
34548546841
-
A soybean transcript map: gene distribution, haplotype and single-nucleotide polymorphism analysis
-
Choi I.Y., Hyten D.L., Matukumalli L.K., Song Q.J., Chaky J.M., Quigley C.V., Chase K., Lark K.G., Reiter R.S., Yoon M.S., Hwang E.Y., Yi S.I., Young N.D., Shoemaker R.C., van Tassell C.P., Specht J.E., Cregan P.B. A soybean transcript map: gene distribution, haplotype and single-nucleotide polymorphism analysis. Genetics 2007, 176:685-696.
-
(2007)
Genetics
, vol.176
, pp. 685-696
-
-
Choi, I.Y.1
Hyten, D.L.2
Matukumalli, L.K.3
Song, Q.J.4
Chaky, J.M.5
Quigley, C.V.6
Chase, K.7
Lark, K.G.8
Reiter, R.S.9
Yoon, M.S.10
Hwang, E.Y.11
Yi, S.I.12
Young, N.D.13
Shoemaker, R.C.14
van Tassell, C.P.15
Specht, J.E.16
Cregan, P.B.17
-
7
-
-
40749109894
-
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
-
Cokus S.J., Feng S., Zhang X.C., Chen Z., Merriman B., Haudenschild C.D., Pradhan S., Nelson S.F., Pellegrini M., Jacobsen S.E. Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature 2008, 452:215-219.
-
(2008)
Nature
, vol.452
, pp. 215-219
-
-
Cokus, S.J.1
Feng, S.2
Zhang, X.C.3
Chen, Z.4
Merriman, B.5
Haudenschild, C.D.6
Pradhan, S.7
Nelson, S.F.8
Pellegrini, M.9
Jacobsen, S.E.10
-
8
-
-
64749084488
-
An approach to transcriptome analysis of non-model organisms using short-read sequences
-
Collins L.J., Biggs P.J., Voelckel C., Joly S. An approach to transcriptome analysis of non-model organisms using short-read sequences. Genome Inform. 2008, 21:3-14.
-
(2008)
Genome Inform.
, vol.21
, pp. 3-14
-
-
Collins, L.J.1
Biggs, P.J.2
Voelckel, C.3
Joly, S.4
-
9
-
-
0032873891
-
An integrated genetic linkage map of the soybean genome
-
Cregan P.B., Jarvik T., Bush A.L., Shoemaker R.C., Lark K.G., Kahler A.L., Kaya N., VanToai T.T., Lohnes D.G., Chung L., Specht J.E. An integrated genetic linkage map of the soybean genome. Crop Sci. 1999, 39:1464-1490.
-
(1999)
Crop Sci.
, vol.39
, pp. 1464-1490
-
-
Cregan, P.B.1
Jarvik, T.2
Bush, A.L.3
Shoemaker, R.C.4
Lark, K.G.5
Kahler, A.L.6
Kaya, N.7
VanToai, T.T.8
Lohnes, D.G.9
Chung, L.10
Specht, J.E.11
-
10
-
-
77950931395
-
Dating the origins of polyploidy events
-
Doyle J.J., Egan A.N. Dating the origins of polyploidy events. New Phytol. 2010, 186:73-85.
-
(2010)
New Phytol.
, vol.186
, pp. 73-85
-
-
Doyle, J.J.1
Egan, A.N.2
-
11
-
-
77649149766
-
SoyTEdb: a comprehensive database of transposable elements in the soybean genome
-
Du J.C., Grant D., Tian Z.X., Nelson R.T., Zhu L.C., Shoemaker R.C., Ma J.X. SoyTEdb: a comprehensive database of transposable elements in the soybean genome. BMC Genomics 2010, 11:113.
-
(2010)
BMC Genomics
, vol.11
, pp. 113
-
-
Du, J.C.1
Grant, D.2
Tian, Z.X.3
Nelson, R.T.4
Zhu, L.C.5
Shoemaker, R.C.6
Ma, J.X.7
-
12
-
-
78349247548
-
A fluorescence in situ hybridization system for karyotyping soybean
-
Findley S.D., Cannon S., Varala K., Du J.C., Ma J.X., Hudson M.E., Birchler J.A., Stacey G. A fluorescence in situ hybridization system for karyotyping soybean. Genetics 2010, 185:727-744.
-
(2010)
Genetics
, vol.185
, pp. 727-744
-
-
Findley, S.D.1
Cannon, S.2
Varala, K.3
Du, J.C.4
Ma, J.X.5
Hudson, M.E.6
Birchler, J.A.7
Stacey, G.8
-
13
-
-
77954877257
-
3 treatment
-
3 treatment. BMC Plant Biol. 2010, 10:153.
-
(2010)
BMC Plant Biol.
, vol.10
, pp. 153
-
-
Ge, Y.1
Li, Y.2
Zhu, Y.3
Bai, X.4
Lv, D.5
Guo, D.6
Ji, W.7
Cai, H.8
-
14
-
-
23744483843
-
Profiling histone modification patterns in plants using genomic tiling microarrays
-
Gendrel A.V., Lippman Z., Martienssen R., Colot V. Profiling histone modification patterns in plants using genomic tiling microarrays. Nat. Methods 2005, 2:213-218.
-
(2005)
Nat. Methods
, vol.2
, pp. 213-218
-
-
Gendrel, A.V.1
Lippman, Z.2
Martienssen, R.3
Colot, V.4
-
15
-
-
70350630311
-
Molecular and chromosomal evidence for allopolyploidy in soybean
-
Gill N., Findley S., Walling J.G., Hans C., Ma J.X., Doyle J., Stacey G., Jackson S.A. Molecular and chromosomal evidence for allopolyploidy in soybean. Plant Physiol. 2009, 151:1167-1174.
-
(2009)
Plant Physiol.
, vol.151
, pp. 1167-1174
-
-
Gill, N.1
Findley, S.2
Walling, J.G.3
Hans, C.4
Ma, J.X.5
Doyle, J.6
Stacey, G.7
Jackson, S.A.8
-
16
-
-
84856585935
-
Phytozome: a comparative platform for green plant genomics
-
Goodstein D.M., Shu S., Howson R., Neupane R., Hayes R.D., Fazo J., Mitros T., Dirks W., Hellsten U., Putnam N., Rokhsar D.S. Phytozome: a comparative platform for green plant genomics. Nucleic Acids Res. 2012, 40:D1178-D1186.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Goodstein, D.M.1
Shu, S.2
Howson, R.3
Neupane, R.4
Hayes, R.D.5
Fazo, J.6
Mitros, T.7
Dirks, W.8
Hellsten, U.9
Putnam, N.10
Rokhsar, D.S.11
-
17
-
-
75549088763
-
SoyBase, the USDA-ARS soybean genetics and genomics database
-
Grant D., Nelson R.T., Cannon S.B., Shoemaker R.C. SoyBase, the USDA-ARS soybean genetics and genomics database. Nucleic Acids Res. 2010, 38:D843-D846.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Grant, D.1
Nelson, R.T.2
Cannon, S.B.3
Shoemaker, R.C.4
-
18
-
-
36248953882
-
Chromatin immunoprecipitation: optimization, quantitative analysis and data normalization
-
Haring M., Offermann S., Danker T., Horst I., Peterhansel C., Stam M. Chromatin immunoprecipitation: optimization, quantitative analysis and data normalization. Plant Methods 2007, 3:11.
-
(2007)
Plant Methods
, vol.3
, pp. 11
-
-
Haring, M.1
Offermann, S.2
Danker, T.3
Horst, I.4
Peterhansel, C.5
Stam, M.6
-
19
-
-
66449120272
-
High-throughput genotyping by whole-genome resequencing
-
Huang X.H., Feng Q., Qian Q., Zhao Q., Wang L., Wang A.H., Guan J.P., Fan D.L., Weng Q.J., Huang T., Dong G.J., Sang T., Han B. High-throughput genotyping by whole-genome resequencing. Genome Res. 2009, 19:1068-1076.
-
(2009)
Genome Res.
, vol.19
, pp. 1068-1076
-
-
Huang, X.H.1
Feng, Q.2
Qian, Q.3
Zhao, Q.4
Wang, L.5
Wang, A.H.6
Guan, J.P.7
Fan, D.L.8
Weng, Q.J.9
Huang, T.10
Dong, G.J.11
Sang, T.12
Han, B.13
-
20
-
-
33750733285
-
Genome-wide analysis of histone modifications by ChIP-on-chip
-
Huebert D.J., Kamal M., O'Donovan A., Bernstein B.E. Genome-wide analysis of histone modifications by ChIP-on-chip. Methods 2006, 40:365-369.
-
(2006)
Methods
, vol.40
, pp. 365-369
-
-
Huebert, D.J.1
Kamal, M.2
O'Donovan, A.3
Bernstein, B.E.4
-
21
-
-
33750964714
-
Impacts of genetic bottlenecks on soybean genome diversity
-
Hyten D.L., Song Q.J., Zhu Y.L., Choi I.Y., Nelson R.L., Costa J.M., Specht J.E., Shoemaker R.C., Cregan P.B. Impacts of genetic bottlenecks on soybean genome diversity. Proc. Natl. Acad. Sci. USA 2006, 103:16666-16671.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 16666-16671
-
-
Hyten, D.L.1
Song, Q.J.2
Zhu, Y.L.3
Choi, I.Y.4
Nelson, R.L.5
Costa, J.M.6
Specht, J.E.7
Shoemaker, R.C.8
Cregan, P.B.9
-
22
-
-
76749107192
-
A high density integrated genetic linkage map of soybean and the development of a 1536 universal soy linkage panel for quantitative trait locus mapping
-
Hyten D.L., Choi I.Y., Song Q.J., Specht J.E., Carter T.E., Shoemaker R.C., Hwang E.Y., Matukumalli L.K., Cregan P.B. A high density integrated genetic linkage map of soybean and the development of a 1536 universal soy linkage panel for quantitative trait locus mapping. Crop Sci. 2010, 50:960-968.
-
(2010)
Crop Sci.
, vol.50
, pp. 960-968
-
-
Hyten, D.L.1
Choi, I.Y.2
Song, Q.J.3
Specht, J.E.4
Carter, T.E.5
Shoemaker, R.C.6
Hwang, E.Y.7
Matukumalli, L.K.8
Cregan, P.B.9
-
23
-
-
76749130701
-
High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence
-
Hyten D.L., Cannon S.B., Song Q.J., Weeks N., Fickus E.W., Shoemaker R.C., Specht J.E., Farmer A.D., May G.D., Cregan P.B. High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence. BMC Genomics 2010, 11:38.
-
(2010)
BMC Genomics
, vol.11
, pp. 38
-
-
Hyten, D.L.1
Cannon, S.B.2
Song, Q.J.3
Weeks, N.4
Fickus, E.W.5
Shoemaker, R.C.6
Specht, J.E.7
Farmer, A.D.8
May, G.D.9
Cregan, P.B.10
-
24
-
-
80051578403
-
Sequencing crop genomes: approaches and applications
-
Jackson S.A., Iwata A., Lee S.H., Schmutz J., Shoemaker R. Sequencing crop genomes: approaches and applications. New Phytol. 2011, 191:915-925.
-
(2011)
New Phytol.
, vol.191
, pp. 915-925
-
-
Jackson, S.A.1
Iwata, A.2
Lee, S.H.3
Schmutz, J.4
Shoemaker, R.5
-
25
-
-
33845574866
-
Toward a reference sequencing of the soybean genome: a multiagency effort
-
Jackson S.A., Rokhsar D., Stacey G., Shoemaker R.C., Schmutz J., Grimwood J. Toward a reference sequencing of the soybean genome: a multiagency effort. Crop Sci. 2006, 46:S55-S61.
-
(2006)
Crop Sci.
, vol.46
-
-
Jackson, S.A.1
Rokhsar, D.2
Stacey, G.3
Shoemaker, R.C.4
Schmutz, J.5
Grimwood, J.6
-
26
-
-
34250159524
-
Genome-wide mapping of in vivo protein-DNA interactions
-
Johnson D.S., Mortazavi A., Myers R.M., Wold B. Genome-wide mapping of in vivo protein-DNA interactions. Science 2007, 316:1497-1502.
-
(2007)
Science
, vol.316
, pp. 1497-1502
-
-
Johnson, D.S.1
Mortazavi, A.2
Myers, R.M.3
Wold, B.4
-
27
-
-
84862247547
-
Soybean Knowledge Base (SoyKB): a web resource for soybean translational genomics
-
Joshi T., Patil K., Fitzpatrick M.R., Franklin L.D., Yao Q., Cook J.R., Wang Z., Libault M., Brechenmacher L., Valliyodan B., Wu X., Cheng J., Stacey G., Nguyen H.T., Xu D. Soybean Knowledge Base (SoyKB): a web resource for soybean translational genomics. BMC Genomics 2012, 13(Suppl. 1):S15.
-
(2012)
BMC Genomics
, vol.13
, Issue.SUPPL. 1
-
-
Joshi, T.1
Patil, K.2
Fitzpatrick, M.R.3
Franklin, L.D.4
Yao, Q.5
Cook, J.R.6
Wang, Z.7
Libault, M.8
Brechenmacher, L.9
Valliyodan, B.10
Wu, X.11
Cheng, J.12
Stacey, G.13
Nguyen, H.T.14
Xu, D.15
-
28
-
-
0037226595
-
Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat
-
Kashkush K., Feldman M., Levy A.A. Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat. Nat. Genet. 2003, 33:102-106.
-
(2003)
Nat. Genet.
, vol.33
, pp. 102-106
-
-
Kashkush, K.1
Feldman, M.2
Levy, A.A.3
-
29
-
-
77749320166
-
Chromatin immunoprecipitation (ChIP) of plant transcription factors followed by sequencing (ChIP-SEQ) or hybridization to whole genome arrays (ChIP-CHIP)
-
Kaufmann K., Muino J.M., Osteras M., Farinelli L., Krajewski P., Angenent G.C. Chromatin immunoprecipitation (ChIP) of plant transcription factors followed by sequencing (ChIP-SEQ) or hybridization to whole genome arrays (ChIP-CHIP). Nat. Protoc. 2010, 5:457-472.
-
(2010)
Nat. Protoc.
, vol.5
, pp. 457-472
-
-
Kaufmann, K.1
Muino, J.M.2
Osteras, M.3
Farinelli, L.4
Krajewski, P.5
Angenent, G.C.6
-
30
-
-
78650668282
-
Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome
-
Kim M.Y., Lee S., Van K., Kim T.H., Jeong S.C., Choi I.Y., Kim D.S., Lee Y.S., Park D., Ma J., Kim W.Y., Kim B.C., Park S., Lee K.A., Kim D.H., Kim K.H., Shin J.H., Jang Y.E., Kim K.D., Liu W.X., Chaisan T., Kang Y.J., Lee Y.H., Moon J.K., Schmutz J., Jackson S.A., Bhak J., Lee S.H. Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome. Proc. Natl. Acad. Sci. USA 2010, 107:22032-22037.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 22032-22037
-
-
Kim, M.Y.1
Lee, S.2
Van, K.3
Kim, T.H.4
Jeong, S.C.5
Choi, I.Y.6
Kim, D.S.7
Lee, Y.S.8
Park, D.9
Ma, J.10
Kim, W.Y.11
Kim, B.C.12
Park, S.13
Lee, K.A.14
Kim, D.H.15
Kim, K.H.16
Shin, J.H.17
Jang, Y.E.18
Kim, K.D.19
Liu, W.X.20
Chaisan, T.21
Kang, Y.J.22
Lee, Y.H.23
Moon, J.K.24
Schmutz, J.25
Jackson, S.A.26
Bhak, J.27
Lee, S.H.28
more..
-
31
-
-
5144219921
-
Characterization of the maize endosperm transcriptome and its comparison to the rice genome
-
Lai J.S., Dey N., Kim C.S., Bharti A.K., Rudd S., Mayer K.F.X., Larkins B.A., Becraft P., Messing J. Characterization of the maize endosperm transcriptome and its comparison to the rice genome. Genome Res. 2004, 14:1932-1937.
-
(2004)
Genome Res.
, vol.14
, pp. 1932-1937
-
-
Lai, J.S.1
Dey, N.2
Kim, C.S.3
Bharti, A.K.4
Rudd, S.5
Mayer, K.F.X.6
Larkins, B.A.7
Becraft, P.8
Messing, J.9
-
32
-
-
78649479141
-
Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection
-
Lam H.-M., Xu X., Liu X., Chen W.B., Yang G.H., Wong F.L., Li M.W., He W.M., Qin N., Wang B., Li J., Jian M., Wang J.A., Shao G., Wang J., Sun S.S.M., Zhang G.Y. Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection. Nat. Genet. 2010, 42:1053-1059.
-
(2010)
Nat. Genet.
, vol.42
, pp. 1053-1059
-
-
Lam, H.-M.1
Xu, X.2
Liu, X.3
Chen, W.B.4
Yang, G.H.5
Wong, F.L.6
Li, M.W.7
He, W.M.8
Qin, N.9
Wang, B.10
Li, J.11
Jian, M.12
Wang, J.A.13
Shao, G.14
Wang, J.15
Sun, S.S.M.16
Zhang, G.Y.17
-
33
-
-
11144333713
-
A major QTL conditioning salt tolerance in S-100 soybean and descendent cultivars
-
Lee G.J., Boerma H.R., Villagarcia M.R., Zhou X., Carter T.E., Li Z., Gibbs M.O. A major QTL conditioning salt tolerance in S-100 soybean and descendent cultivars. Theor. Appl. Genet. 2004, 109:1610-1619.
-
(2004)
Theor. Appl. Genet.
, vol.109
, pp. 1610-1619
-
-
Lee, G.J.1
Boerma, H.R.2
Villagarcia, M.R.3
Zhou, X.4
Carter, T.E.5
Li, Z.6
Gibbs, M.O.7
-
34
-
-
75949111391
-
Complete transcriptome of the soybean root hair cell, a single-cell model, and its alteration in response to Bradyrhizobium japonicum infection
-
Libault M., Farmer A., Brechenmacher L., Drnevich J., Langley R.J., Bilgin D.D., Radwan O., Neece D.J., Clough S.J., May G.D., Stacey G. Complete transcriptome of the soybean root hair cell, a single-cell model, and its alteration in response to Bradyrhizobium japonicum infection. Plant Physiol. 2010, 152:541-552.
-
(2010)
Plant Physiol.
, vol.152
, pp. 541-552
-
-
Libault, M.1
Farmer, A.2
Brechenmacher, L.3
Drnevich, J.4
Langley, R.J.5
Bilgin, D.D.6
Radwan, O.7
Neece, D.J.8
Clough, S.J.9
May, G.D.10
Stacey, G.11
-
35
-
-
77957764187
-
Structural and functional divergence of a 1-Mb duplicated region in the soybean (Glycine max) genome and comparison to an orthologous region from Phaseolus vulgaris
-
Lin J.Y., Stupar R.M., Hans C., Hyten D.L., Jackson S.A. Structural and functional divergence of a 1-Mb duplicated region in the soybean (Glycine max) genome and comparison to an orthologous region from Phaseolus vulgaris. Plant Cell 2010, 22:2545-2561.
-
(2010)
Plant Cell
, vol.22
, pp. 2545-2561
-
-
Lin, J.Y.1
Stupar, R.M.2
Hans, C.3
Hyten, D.L.4
Jackson, S.A.5
-
36
-
-
33344458581
-
The accumulation of deleterious mutations in rice genomes: a hypothesis on the cost of domestication
-
Lu J., Tang T., Tang H., Huang J.Z., Shi S.H., Wu C.I. The accumulation of deleterious mutations in rice genomes: a hypothesis on the cost of domestication. Trends Genet. 2006, 22:126-131.
-
(2006)
Trends Genet.
, vol.22
, pp. 126-131
-
-
Lu, J.1
Tang, T.2
Tang, H.3
Huang, J.Z.4
Shi, S.H.5
Wu, C.I.6
-
37
-
-
31044442399
-
Recombination, rearrangement, reshuffling, and divergence in a centromeric region of rice
-
Ma J.X., Bennetzen J.L. Recombination, rearrangement, reshuffling, and divergence in a centromeric region of rice. Proc. Natl. Acad. Sci. USA 2006, 103:383-388.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 383-388
-
-
Ma, J.X.1
Bennetzen, J.L.2
-
38
-
-
17944370746
-
Soybean genomic survey: BAC-end sequences near RFLP and SSR markers
-
Marek L.F., Mudge J., Darnielle L., Grant D., Hanson N., Paz M., Huihuang Y., Denny R., Larson K., Foster-Hartnett D., Cooper A., Danesh D., Larsen D., Schmidt T., Staggs R., Crow J.A., Retzel E., Young N.D., Shoemaker R.C. Soybean genomic survey: BAC-end sequences near RFLP and SSR markers. Genome 2001, 44:572-581.
-
(2001)
Genome
, vol.44
, pp. 572-581
-
-
Marek, L.F.1
Mudge, J.2
Darnielle, L.3
Grant, D.4
Hanson, N.5
Paz, M.6
Huihuang, Y.7
Denny, R.8
Larson, K.9
Foster-Hartnett, D.10
Cooper, A.11
Danesh, D.12
Larsen, D.13
Schmidt, T.14
Staggs, R.15
Crow, J.A.16
Retzel, E.17
Young, N.D.18
Shoemaker, R.C.19
-
39
-
-
80052960863
-
Next-generation transcriptome assembly
-
Martin J.A., Wang Z. Next-generation transcriptome assembly. Nat. Rev. Genet. 2011, 12:671-682.
-
(2011)
Nat. Rev. Genet.
, vol.12
, pp. 671-682
-
-
Martin, J.A.1
Wang, Z.2
-
40
-
-
80855123881
-
Gene expression profiling of resistant and susceptible soybean lines infected with soybean cyst nematode
-
Mazarei M., Liu W.X., Al-Ahmad H., Arelli P., Pantalone V., Stewart C. Gene expression profiling of resistant and susceptible soybean lines infected with soybean cyst nematode. Theor. Appl. Genet. 2011, 123:1193-1206.
-
(2011)
Theor. Appl. Genet.
, vol.123
, pp. 1193-1206
-
-
Mazarei, M.1
Liu, W.X.2
Al-Ahmad, H.3
Arelli, P.4
Pantalone, V.5
Stewart, C.6
-
41
-
-
10644247621
-
Applications of DNA tiling arrays for whole-genome analysis
-
Mockler T.C., Ecker J.R. Applications of DNA tiling arrays for whole-genome analysis. Genomics 2005, 85:1-15.
-
(2005)
Genomics
, vol.85
, pp. 1-15
-
-
Mockler, T.C.1
Ecker, J.R.2
-
42
-
-
33847661809
-
Protocol for the fast chromatin immunoprecipitation (ChIP) method
-
Nelson J.D., Denisenko O., Bomsztyk K. Protocol for the fast chromatin immunoprecipitation (ChIP) method. Nat. Protoc. 2006, 1:179-185.
-
(2006)
Nat. Protoc.
, vol.1
, pp. 179-185
-
-
Nelson, J.D.1
Denisenko, O.2
Bomsztyk, K.3
-
43
-
-
78751570979
-
RNA sequencing: advances, challenges and opportunities
-
Ozsolak F., Milos P.M. RNA sequencing: advances, challenges and opportunities. Nat. Rev. Genet. 2010, 12:87-98.
-
(2010)
Nat. Rev. Genet.
, vol.12
, pp. 87-98
-
-
Ozsolak, F.1
Milos, P.M.2
-
44
-
-
22844439628
-
Placing paleopolyploidy in relation to taxon divergence: a phylogenetic analysis in legumes using 39 gene families
-
Pfeil B.E., Schlueter J.A., Shoemaker R.C., Doyle J.J. Placing paleopolyploidy in relation to taxon divergence: a phylogenetic analysis in legumes using 39 gene families. Syst. Biol. 2005, 54:441-454.
-
(2005)
Syst. Biol.
, vol.54
, pp. 441-454
-
-
Pfeil, B.E.1
Schlueter, J.A.2
Shoemaker, R.C.3
Doyle, J.J.4
-
45
-
-
35848952287
-
GeneChip profiling of transcriptional responses to soybean cyst nematode, Heterodera glycines, colonization of soybean roots
-
Puthoff D.P., Ehrenfried M.L., Vinyard B.T., Tucker M.L. GeneChip profiling of transcriptional responses to soybean cyst nematode, Heterodera glycines, colonization of soybean roots. J. Exp. Bot. 2007, 58:3407-3418.
-
(2007)
J. Exp. Bot.
, vol.58
, pp. 3407-3418
-
-
Puthoff, D.P.1
Ehrenfried, M.L.2
Vinyard, B.T.3
Tucker, M.L.4
-
46
-
-
77950668357
-
Protocol: fine-tuning of a chromatin immunoprecipitation (ChIP) protocol in tomato
-
Ricardi M.M., Gonzalez R.M., Iusem N.D. Protocol: fine-tuning of a chromatin immunoprecipitation (ChIP) protocol in tomato. Plant Methods 2010, 6:11.
-
(2010)
Plant Methods
, vol.6
, pp. 11
-
-
Ricardi, M.M.1
Gonzalez, R.M.2
Iusem, N.D.3
-
47
-
-
0042669957
-
Genomewide histone acetylation microarrays
-
Robyr D., Grunstein M. Genomewide histone acetylation microarrays. Methods 2003, 31:83-89.
-
(2003)
Methods
, vol.31
, pp. 83-89
-
-
Robyr, D.1
Grunstein, M.2
-
48
-
-
74549221016
-
Genome sequence of the palaeopolyploid soybean
-
Schmutz J., Cannon S.B., Schlueter J., Ma J.X., Mitros T., Nelson W., Hyten D.L., Song Q.J., Thelen J.J., Cheng J.L., Xu D., Hellsten U., May G.D., Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D., Valliyodan B., Lindquist E., Peto M., Grant D., Shu S.Q., Goodstein D., Barry K., Futrell-Griggs M., Abernathy B., Du J.C., Tian Z.X., Zhu L.C., Gill N., Joshi T., Libault M., Sethuraman A., Zhang X.C., Shinozaki K., Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.C., Jackson S.A. Genome sequence of the palaeopolyploid soybean. Nature 2010, 463:178-183.
-
(2010)
Nature
, vol.463
, pp. 178-183
-
-
Schmutz, J.1
Cannon, S.B.2
Schlueter, J.3
Ma, J.X.4
Mitros, T.5
Nelson, W.6
Hyten, D.L.7
Song, Q.J.8
Thelen, J.J.9
Cheng, J.L.10
Xu, D.11
Hellsten, U.12
May, G.D.13
Yu, Y.14
Sakurai, T.15
Umezawa, T.16
Bhattacharyya, M.K.17
Sandhu, D.18
Valliyodan, B.19
Lindquist, E.20
Peto, M.21
Grant, D.22
Shu, S.Q.23
Goodstein, D.24
Barry, K.25
Futrell-Griggs, M.26
Abernathy, B.27
Du, J.C.28
Tian, Z.X.29
Zhu, L.C.30
Gill, N.31
Joshi, T.32
Libault, M.33
Sethuraman, A.34
Zhang, X.C.35
Shinozaki, K.36
Nguyen, H.T.37
Wing, R.A.38
Cregan, P.39
Specht, J.40
Grimwood, J.41
Rokhsar, D.42
Stacey, G.43
Shoemaker, R.C.44
Jackson, S.A.45
more..
-
49
-
-
77955214742
-
RNA-seq atlas of Glycine max: a guide to the soybean transcriptome
-
Severin A.J., Woody J.L., Bolon Y.T., Joseph B., Diers B.W., Farmer A.D., Muehlbauer G.J., Nelson R.T., Grant D., Specht J.E., Graham M.A., Cannon S.B., May G.D., Vance C.P., Shoemaker R.C. RNA-seq atlas of Glycine max: a guide to the soybean transcriptome. BMC Plant Biol. 2010, 10:160.
-
(2010)
BMC Plant Biol.
, vol.10
, pp. 160
-
-
Severin, A.J.1
Woody, J.L.2
Bolon, Y.T.3
Joseph, B.4
Diers, B.W.5
Farmer, A.D.6
Muehlbauer, G.J.7
Nelson, R.T.8
Grant, D.9
Specht, J.E.10
Graham, M.A.11
Cannon, S.B.12
May, G.D.13
Vance, C.P.14
Shoemaker, R.C.15
-
50
-
-
33847075431
-
Genome-wide analysis of chromatin status using tiling microarrays
-
Shivaswamy S., Iyer V.R. Genome-wide analysis of chromatin status using tiling microarrays. Methods 2007, 41:304-311.
-
(2007)
Methods
, vol.41
, pp. 304-311
-
-
Shivaswamy, S.1
Iyer, V.R.2
-
52
-
-
43549118881
-
Microsatellite discovery from BAC end sequences and genetic mapping to anchor the soybean physical and genetic maps
-
Shoemaker R.C., Grant D., Olson T., Warren W.C., Wing R., Yu Y., Kim H., Cregan P., Joseph B., Futrell-Griggs M., Nelson W., Davito J., Walker J., Wallis J., Kremitski C., Scheer D., Clifton S.W., Graves T., Nguyen H., Wu X.L., Luo M.C., Dvorak J., Nelson R., Cannon S., Tomkins J., Schmutz J., Stacey G., Jackson S. Microsatellite discovery from BAC end sequences and genetic mapping to anchor the soybean physical and genetic maps. Genome 2008, 51:294-302.
-
(2008)
Genome
, vol.51
, pp. 294-302
-
-
Shoemaker, R.C.1
Grant, D.2
Olson, T.3
Warren, W.C.4
Wing, R.5
Yu, Y.6
Kim, H.7
Cregan, P.8
Joseph, B.9
Futrell-Griggs, M.10
Nelson, W.11
Davito, J.12
Walker, J.13
Wallis, J.14
Kremitski, C.15
Scheer, D.16
Clifton, S.W.17
Graves, T.18
Nguyen, H.19
Wu, X.L.20
Luo, M.C.21
Dvorak, J.22
Nelson, R.23
Cannon, S.24
Tomkins, J.25
Schmutz, J.26
Stacey, G.27
Jackson, S.28
more..
-
53
-
-
0000699697
-
The genome relationship between Glycine max (L) Merr. and Glycine soja Sieb. and Zucc. as revealed by pachytene chromosome analysis
-
Singh R.J., Hymowitz T. The genome relationship between Glycine max (L) Merr. and Glycine soja Sieb. and Zucc. as revealed by pachytene chromosome analysis. Theor. Appl. Genet. 1988, 76:705-711.
-
(1988)
Theor. Appl. Genet.
, vol.76
, pp. 705-711
-
-
Singh, R.J.1
Hymowitz, T.2
-
54
-
-
3142708169
-
A new integrated genetic linkage map of the soybean
-
Song Q.J., Marek L.F., Shoemaker R.C., Lark K.G., Concibido V.C., Delannay X., Specht J.E., Cregan P.B. A new integrated genetic linkage map of the soybean. Theor. Appl. Genet. 2004, 109:122-128.
-
(2004)
Theor. Appl. Genet.
, vol.109
, pp. 122-128
-
-
Song, Q.J.1
Marek, L.F.2
Shoemaker, R.C.3
Lark, K.G.4
Concibido, V.C.5
Delannay, X.6
Specht, J.E.7
Cregan, P.B.8
-
55
-
-
0043171067
-
Chromatin immunoprecipitation: a tool for studying histone acetylation and transcription factor binding
-
Spencer V.A., Sun J.M., Li L., Davie J.R. Chromatin immunoprecipitation: a tool for studying histone acetylation and transcription factor binding. Methods 2003, 31:67-75.
-
(2003)
Methods
, vol.31
, pp. 67-75
-
-
Spencer, V.A.1
Sun, J.M.2
Li, L.3
Davie, J.R.4
-
56
-
-
18644378331
-
The generic genome browser: a building block for a model organism system database
-
Stein L.D., Mungall C., Shu S.Q., Caudy M., Mangone M., Day A., Nickerson E., Stajich J.E., Harris T.W., Arva A., Lewis S. The generic genome browser: a building block for a model organism system database. Genome Res. 2002, 12:1599-1610.
-
(2002)
Genome Res.
, vol.12
, pp. 1599-1610
-
-
Stein, L.D.1
Mungall, C.2
Shu, S.Q.3
Caudy, M.4
Mangone, M.5
Day, A.6
Nickerson, E.7
Stajich, J.E.8
Harris, T.W.9
Arva, A.10
Lewis, S.11
-
57
-
-
78650661833
-
Into the wild: the soybean genome meets its undomesticated relative
-
Stupar R.M. Into the wild: the soybean genome meets its undomesticated relative. Proc. Natl. Acad. Sci. USA 2010, 107:21947-21948.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 21947-21948
-
-
Stupar, R.M.1
-
58
-
-
42549136362
-
Novel and nodulation-regulated microRNAs in soybean roots
-
Subramanian S., Fu Y., Sunkar R., Barbazuk W.B., Zhu J.-K., Yu O. Novel and nodulation-regulated microRNAs in soybean roots. BMC Genomics 2008, 9:160.
-
(2008)
BMC Genomics
, vol.9
, pp. 160
-
-
Subramanian, S.1
Fu, Y.2
Sunkar, R.3
Barbazuk, W.B.4
Zhu, J.-K.5
Yu, O.6
-
59
-
-
57749195712
-
RNA-Seq: a revolutionary tool for transcriptomics
-
Wang Z., Gerstein M., Snyder M. RNA-Seq: a revolutionary tool for transcriptomics. Nat. Rev. Genet. 2009, 10:57-63.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 57-63
-
-
Wang, Z.1
Gerstein, M.2
Snyder, M.3
-
60
-
-
77649328902
-
SoyDB: a knowledge database of soybean transcription factors
-
Wang Z., Libault M., Joshi T., Valliyodan B., Nguyen H.T., Xu D., Stacey G., Cheng J.L. SoyDB: a knowledge database of soybean transcription factors. BMC Plant Biol. 2010, 10:14.
-
(2010)
BMC Plant Biol.
, vol.10
, pp. 14
-
-
Wang, Z.1
Libault, M.2
Joshi, T.3
Valliyodan, B.4
Nguyen, H.T.5
Xu, D.6
Stacey, G.7
Cheng, J.L.8
-
61
-
-
1242341968
-
A BAC and BIBAC-based physical map of the soybean genome
-
Wu C.C., Sun S.K., Nimmakayala P., Santos F.A., Meksem K., Springman R., Ding K., Lightfoot D.A., Zhang H.B. A BAC and BIBAC-based physical map of the soybean genome. Genome Res. 2004, 14:319-326.
-
(2004)
Genome Res.
, vol.14
, pp. 319-326
-
-
Wu, C.C.1
Sun, S.K.2
Nimmakayala, P.3
Santos, F.A.4
Meksem, K.5
Springman, R.6
Ding, K.7
Lightfoot, D.A.8
Zhang, H.B.9
-
62
-
-
69549084781
-
Mass spectrometry analysis of the variants of histone H3 and H4 of soybean and their post-translational modifications
-
Wu T., Yuan T.Z., Tsai S.N., Wang C.M., Sun S.M., Lam H.M., Ngai S.M. Mass spectrometry analysis of the variants of histone H3 and H4 of soybean and their post-translational modifications. BMC Plant Biol. 2009, 9:98.
-
(2009)
BMC Plant Biol.
, vol.9
, pp. 98
-
-
Wu, T.1
Yuan, T.Z.2
Tsai, S.N.3
Wang, C.M.4
Sun, S.M.5
Lam, H.M.6
Ngai, S.M.7
-
63
-
-
83455201560
-
GmPHD5 acts as an important regulator for crosstalk between histone H3K4 di-methylation and H3K14 acetylation in response to salinity stress in soybean
-
Wu T., Pi E.-X., Tsai S.-N., Lam H.-M., Sun S.S.-M., Kwan Y.W., Ngai S.-M. GmPHD5 acts as an important regulator for crosstalk between histone H3K4 di-methylation and H3K14 acetylation in response to salinity stress in soybean. BMC Plant Biol. 2011, 11:178.
-
(2011)
BMC Plant Biol.
, vol.11
, pp. 178
-
-
Wu, T.1
Pi, E.-X.2
Tsai, S.-N.3
Lam, H.-M.4
Sun, S.S.-M.5
Kwan, Y.W.6
Ngai, S.-M.7
-
64
-
-
40149092542
-
Genetic marker anchoring by six-dimensional pools for development of a soybean physical map
-
Wu X.L., Zhong G.H., Findley S.D., Cregan P., Stacey G., Nguyen H.T. Genetic marker anchoring by six-dimensional pools for development of a soybean physical map. BMC Genomics 2008, 9:28.
-
(2008)
BMC Genomics
, vol.9
, pp. 28
-
-
Wu, X.L.1
Zhong, G.H.2
Findley, S.D.3
Cregan, P.4
Stacey, G.5
Nguyen, H.T.6
-
65
-
-
77955412222
-
SNP discovery by high-throughput sequencing in soybean
-
Wu X.L., Ren C.W., Joshi T., Vuong T., Xu D., Nguyen H.T. SNP discovery by high-throughput sequencing in soybean. BMC Genomics 2010, 11:469.
-
(2010)
BMC Genomics
, vol.11
, pp. 469
-
-
Wu, X.L.1
Ren, C.W.2
Joshi, T.3
Vuong, T.4
Xu, D.5
Nguyen, H.T.6
-
66
-
-
77953796079
-
Parent-independent genotyping for constructing an ultrahigh-density linkage map based on population sequencing
-
Xie W.B., Feng Q., Yu H.H., Huang X.H., Zhao Q.A., Xing Y.Z., Yu S.B., Han B., Zhang Q.F. Parent-independent genotyping for constructing an ultrahigh-density linkage map based on population sequencing. Proc. Natl. Acad. Sci. USA 2010, 107:10578-10583.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 10578-10583
-
-
Xie, W.B.1
Feng, Q.2
Yu, H.H.3
Huang, X.H.4
Zhao, Q.A.5
Xing, Y.Z.6
Yu, S.B.7
Han, B.8
Zhang, Q.F.9
-
67
-
-
43549115088
-
Epigenetic modification of centromeric chromatin: hypomethylation of DNA sequences in the CENH3-associated chromatin in Arabidopsis thaliana and maize
-
Zhang W.L., Lee H.R., Koo D.H., Jiang J.M. Epigenetic modification of centromeric chromatin: hypomethylation of DNA sequences in the CENH3-associated chromatin in Arabidopsis thaliana and maize. Plant Cell 2008, 20:25-34.
-
(2008)
Plant Cell
, vol.20
, pp. 25-34
-
-
Zhang, W.L.1
Lee, H.R.2
Koo, D.H.3
Jiang, J.M.4
-
68
-
-
75549083571
-
PMRD: plant microRNA database
-
Zhang Z.H., Yu J.Y., Li D.F., Zhang Z.Y., Liu F.X., Zhou X., Wang T., Ling Y., Su Z. PMRD: plant microRNA database. Nucleic Acids Res. 2010, 38:D806-D813.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Zhang, Z.H.1
Yu, J.Y.2
Li, D.F.3
Zhang, Z.Y.4
Liu, F.X.5
Zhou, X.6
Wang, T.7
Ling, Y.8
Su, Z.9
-
69
-
-
69249154303
-
DNA methylation polymorphism in annual wild soybean (Glycine soja Sieb. et Zucc.) and cultivated soybean (G. max L. Merr.)
-
Zhong X.F., Wang Y.M., Liu X.D., Gong L., Ma Y., Qi B., Dong Y.S., Liu B. DNA methylation polymorphism in annual wild soybean (Glycine soja Sieb. et Zucc.) and cultivated soybean (G. max L. Merr.). Can. J. Plant Sci. 2009, 89:851-863.
-
(2009)
Can. J. Plant Sci.
, vol.89
, pp. 851-863
-
-
Zhong, X.F.1
Wang, Y.M.2
Liu, X.D.3
Gong, L.4
Ma, Y.5
Qi, B.6
Dong, Y.S.7
Liu, B.8
-
70
-
-
0028089904
-
Hypomethylated sequences: characterization of the duplicate soybean genome
-
Zhu T., Schupp J.M., Oliphant A., Keim P. Hypomethylated sequences: characterization of the duplicate soybean genome. Mol. Gen. Genet. 1994, 244:638-645.
-
(1994)
Mol. Gen. Genet.
, vol.244
, pp. 638-645
-
-
Zhu, T.1
Schupp, J.M.2
Oliphant, A.3
Keim, P.4
|