GmPHD5 acts as an important regulator for crosstalk between histone H3K4 di-methylation and H3K14 acetylation in response to salinity stress in soybean

BMC Plant Biology

Volumn 11, Issue , 2011, Pages

  Wu, Tao ^a   Pi, Er Xu ^a   Tsai, Sau Na ^a   Lam, Hon Ming ^a   Sun, Sai Ming ^a   Kwan, Yiu W ^a   Ngai, Sai Ming ^a  

^a CHINESE UNIVERSITY OF HONG KONG   (Hong Kong)

Author keywords

[No Author keywords available]

Indexed keywords

GLYCINE MAX;

HISTONE; HOMEODOMAIN PROTEIN; LYSINE; SOYBEAN PROTEIN;

ACETYLATION; ARTICLE; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; METHYLATION; MOLECULAR CLONING; PHYSIOLOGICAL STRESS; PROTEIN PROCESSING; SALINITY; SOYBEAN;

ACETYLATION; CLONING, MOLECULAR; GENE EXPRESSION REGULATION, PLANT; HISTONES; HOMEODOMAIN PROTEINS; LYSINE; METHYLATION; PROTEIN PROCESSING, POST-TRANSLATIONAL; SALINITY; SOYBEAN PROTEINS; SOYBEANS; STRESS, PHYSIOLOGICAL;

EID: 83455201560     PISSN: None     EISSN: 14712229     Source Type: Journal    
DOI: 10.1186/1471-2229-11-178     Document Type: Article

References (32)

1. Sokol A, Kwiatkowska A, Jerzmanowski A, Prymakowska-Bosak M. Up-regulation of stress-inducible genes in tobacco and Arabidopsis cells in response to abiotic stresses and ABA treatment correlates with dynamic changes in histone H3 and H4 modifications. Planta 2007, 227:245-254. 10.1007/s00425-007-0612-1, 17721787.
2. Kim JM, To TK, Ishida J, Morosawa T, Kawashima M, Matsui A, Toyoda T, Kimura H, Shinozaki K, Seki M. Alterations of lysine modifications on the histone H3 N-tail under drought stress conditions in Arabidopsis thaliana. Plant Cell Physiology 2008, 49:1580-1588. 10.1093/pcp/pcn133, 18779215.
3. Xu C, Sibicky T, Huang B. Protein profile analysis of salt-responsive proteins in leaves and roots in two cultivars of creeping bentgrass differing in salinity tolerance. Plant Cell Reports 2010, 29:595-615. 10.1007/s00299-010-0847-3, 20361191.
4. Vermeulen M, Eber HC, Matarese F, Marks H, Denissov S, Butter F, Lee KK, Olsen JV, Hyman AA, Stunnenberg HG, Mann M. Quantitative Interaction Proteomics and Genome-wide Profiling of Epigenetic Histone Marks and Their Readers. Cell 2010, 142:967-980. 10.1016/j.cell.2010.08.020, 20850016.
5. Vermeulen M, Mulder KW, Denissov S, Pijnappel WWMP, Schaik FMA, van Varier RA, Baltissen MPA, Stunnenberg HG, Mann M, Timmers HTM. Selective Anchoring of TFIID to Nucleosomes by Trimethylation of Histone H3 Lysine 4. Cell 2007, 131:58-69. 10.1016/j.cell.2007.08.016, 17884155.
6. Sung S, Amasino RM. Vernalisation in Arabidopsis thaliana is mediated by the PHD finger protein VIN3. Nature 2004, 427:159-164. 10.1038/nature02195, 14712276.
7. Sung S, Schmitz R, Amasino RM. A PHD finger protein involved in both the vernalization and photoperiod pathways in Arabidopsis. Genes and Development 2006, 20:3244-3248. 10.1101/gad.1493306, 1686601, 17114575.
8. Greb T, Mylne JS, Crevillen P, Geraldo N, An H, Gendall AR, Dean C. The PHD Finger Protein VRN5 Functions in the Epigenetic Silencing of Arabidopsis FLC. Current Biology 2007, 17:73-78. 10.1016/j.cub.2006.11.052, 17174094.
9. Lee JD, Shannon JG, Vuong TD, Nguyen HT. Inheritance of salt tolerance in wild soybean (Glycine soja Sieb. and Zucc.) accession PI483463. Journal of Heredity 2009, 100:798-801. 10.1093/jhered/esp027, 19451208.
10. De LPSM, Gutierrez C. Arabidopsis ORC1 is a PHD containing H3K4me3 effector that regulates transcription. Proceedings of the National Academy of Sciences of the United States of America 2009, 106:2065-2070. 10.1073/pnas.0811093106, 2644164, 19171893.
11. Winicov I. cDNA encoding putative zinc finger motifs from salt-tolerant alfalfa (Medicago sativa L.) cells. Plant Physiology 1993, 102:681-682. 10.1104/pp.102.2.681, 158829, 8108516.
12. Seki M, Narusaka M, Ishida J, Nanjo T, Fujita M, Oono Y, Kamiya A, Nakajima M, Enju A, Sakurai T, Satou M, Akiyama K, Taji T, Yamaguchi-Shinozaki K, Carninci P, Kawai J, Hayashizaki Y, Shinozaki K. Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray. Plant Journal 2002, 31:279-292. 10.1046/j.1365-313X.2002.01359.x, 12164808.
13. Wei W, Huang J, Hao YJ, Zou HF, Wang HW, Zhao JY, Liu XY, Zhang WK, Ma B, Zhang JS, Chen SY. Soybean GmPHD-type transcription regulators improve stress tolerance in transgenic Arabidopsis plants. PLoS One 2009, 4:e7209. 10.1371/journal.pone.0007209, 2747011, 19789627.
14. Taverna SD, Ilin S, Rogers RS, Tanny JC, Lavender H, Li H, Baker L, Boyle J, Blair LP, Chait BT, Patel DJ, Aitchison JD, Tackett AJ, Allis CD. Yng1 PHD finger binding to H3 trimethylated at K4 promotes NuA3 HAT activity at K14 of H3 and transcription at a subset of targeted ORFs. Molecular Cell 2006, 24:785-796. 10.1016/j.molcel.2006.10.026, 17157260.
15. Ramón-Maiques S, Kuo AJ, Carney D, Matthews AG, Oettinger MA, Gozani O, Yang W. The plant homeodomain finger of RAG2 recognizes histone H3 methylated at both lysine-4 and arginine-2. Proceedings of the National Academy of Sciences of the United States of America 2007, 104:18993-18998. 10.1073/pnas.0709170104, 2141896, 18025461.
16. He X, Fan HY, Garlick JD, Kingston RE. Diverse regulation of SNF2h chromatin remodeling by noncatalytic subunits. Biochemistry 2008, 47:7025-7033. 10.1021/bi702304p, 18553938.
17. Ruthenburg AJ, Allis CD, Wysocka J. Methylation of lysine 4 on histone H3: intricacy of writing and reading a single epigenetic mark. Molecular Cell 2007, 25:15-30. 10.1016/j.molcel.2006.12.014, 17218268.
18. Bastola DR, Pethe VV, Winicov I. Alfin1, a novel zinc-finger protein in alfalfa roots that binds to promoter elements in the salt-inducible MsPRP2 gene. Plant Molecular Biology 1998, 38:1123-1135. 10.1023/A:1006081926699, 9869418.
19. Baker LA, Allis CD, Wang GG. PHD fingers in human diseases: disorders arising from misinterpreting epigenetic marks. Mutation Research 2008, 647:3-12. 10.1016/j.mrfmmm.2008.07.004, 2656448, 18682256.
20. Vetting MW, S de Carvalho LP, Yu M, Hegde SS, Magnet S, Roderick SL, Blanchard JS. Structure and functions of the GNAT superfamily of acetyltransferases. Archives of Biochemistry and Biophysics 2005, 433:212-226. 10.1016/j.abb.2004.09.003, 15581578.
21. Brownell JE, Allis CD. Special HATs for special occasions: linking histone acetylation to chromatin assembly and gene activation. Current Opinion in Genetics & Development 1996, 6:176-184. 10.1016/S0959-437X(96)80048-7, 22030243.
22. Berger SL. Histone modifications in transcriptional regulation. Current Opinion in Genetics & Development 2002, 12:142-148. 10.1016/S0959-437X(02)00279-4, 22030243.
23. Benhamed M, Bertrand C, Servet C, Zhou DX. Arabidopsis GCN5, HD1, and TAF1/HAF2 interact to regulate histone acetylation required for light-responsive gene expression. Plant Cell 2006, 18:2893-2903. 10.1105/tpc.106.043489, 1693931, 17085686.
24. Yang XJ, Seto E. Lysine acetylation: codified crosstalk with other posttranslational modifications. Molecular Cell 2008, 31:449-461. 10.1016/j.molcel.2008.07.002, 2551738, 18722172.
25. Yang W. The plant homeodomain finger of RAG2 recognizes histone H3 methylated at both lysine-4 and arginine-2. Proceedings of the National Academy of Sciences of the United States of America 2007, 104:18993-18998. 10.1073/pnas.0709170104, 2141896, 18025461.
26. Aso T, Lane WS, Conaway JW, Conaway RC. Elongin (SIII): a multisubunit regulator of elongation by RNA polymerase II. Science 1995, 269:1439-1443. 10.1126/science.7660129, 7660129.
27. Schübeler D, MacAlpine DM, Scalzo D, Wirbelauer C, Kooperberg C, van Leeuwen F, Gottschling DE, O'Neill LP, Turner BM, Delrow J, Bell SP, Groudine M. The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote. Genes and Development 2004, 18:1263-1271. 10.1101/gad.1198204, 420352, 15175259.
28. Cheung MY, Zeng NY, Tong SW, Li WYF, Xue Y, Zhao KJ, Wang C, Zhang Q, Fu Y, Sun Z, Sun SSM, Lam HM. Constitutive expression of a rice GTPase-activating protein induces defense responses. New Phytologist 2008, 179:530-545. 10.1111/j.1469-8137.2008.02473.x, 19086295.
29. Choy WY, Lin SG, Chan PKS, Tam JSL, Lo YMD, Chu IMT, Tsai SN, Zhong MQ, Fung KP, Waye MMY, Tsui SKW, Ng KO, Shan ZX, Yang M, Wu YL, Lin ZY, Ngai SM. Synthetic Peptide Studies on the Severe Acute Respiratory Syndrome (SARS) Coronavirus Spike Glycoprotein: Perspective for SARS Vaccine Development. Clinical Chemistry 2004, 50:1036-1042. 10.1373/clinchem.2003.029801, 15044316.
30. Calikowski TT, Meier I. Isolation of nuclear proteins. Methods in Molecular Biology 2006, 323:393-402.
31. Wysocka J, Swigut T, Xiao H, Milne TA, Kwon SY, Landry J, Kauer M, Tackett AJ, Chait BT, Badenhorst P, Wu C, Allis CD. A PHD finger of NURF couples histone H3 lysine 4 trimethylation with chromatin remodelling. Nature 2006, 442:86-90.
32. Wu T, Yuan T, Tsai SN, Wang C, Sun SM, Lam HM, Ngai SM. Mass spectrometry analysis of the variants of histone H3 and H4 of soybean and their post-translational modifications. BMC Plant Biology 2009, 9(1):98. 10.1186/1471-2229-9-98, 2732622, 19643030.