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Volumn 152, Issue 2, 2010, Pages 541-552

Complete transcriptome of the soybean root hair cell, a single-cell model, and its alteration in response to Bradyrhizobium japonicum infection

Author keywords

[No Author keywords available]

Indexed keywords

BRADYRHIZOBIUM JAPONICUM; GLYCINE MAX;

EID: 75949111391     PISSN: 00320889     EISSN: 15322548     Source Type: Journal    
DOI: 10.1104/pp.109.148379     Document Type: Article
Times cited : (250)

References (55)
  • 1
    • 0037517063 scopus 로고    scopus 로고
    • The NFP locus of Medicago truncatula controls an early step of Nod factor signal transduction upstream of a rapid calcium flux and root hair deformation
    • Amor BB, Shaw SL, Oldroyd GE, Maillet F, Penmetsa RV, Cook D, Long SR, Denarie J, Gough C (2003) The NFP locus of Medicago truncatula controls an early step of Nod factor signal transduction upstream of a rapid calcium flux and root hair deformation. Plant J 34: 495-506
    • (2003) Plant J , vol.34 , pp. 495-506
    • Amor, B.B.1    Shaw, S.L.2    Oldroyd, G.E.3    Maillet, F.4    Penmetsa, R.V.5    Cook, D.6    Long, S.R.7    Denarie, J.8    Gough, C.9
  • 2
    • 17644371012 scopus 로고    scopus 로고
    • Comparison of the transcript profiles from the root and the nodulating root of the model legume Lotus japonicus by serial analysis of gene expression
    • Asamizu E, Nakamura Y, Sato S, Tabata S (2005) Comparison of the transcript profiles from the root and the nodulating root of the model legume Lotus japonicus by serial analysis of gene expression. Mol Plant Microbe Interact 18: 487-498
    • (2005) Mol Plant Microbe Interact , vol.18 , pp. 487-498
    • Asamizu, E.1    Nakamura, Y.2    Sato, S.3    Tabata, S.4
  • 3
    • 9344251110 scopus 로고    scopus 로고
    • A dual-genome symbiosis chip for coordinate study of signal exchange and development in a prokaryote-host interaction
    • Barnett MJ, Toman CJ, Fisher RF, Long SR (2004) A dual-genome symbiosis chip for coordinate study of signal exchange and development in a prokaryote-host interaction. Proc Natl Acad Sci USA 101: 16636-16641
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 16636-16641
    • Barnett, M.J.1    Toman, C.J.2    Fisher, R.F.3    Long, S.R.4
  • 5
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc B 57: 289-300
    • (1995) J R Stat Soc B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 7
    • 4444220733 scopus 로고    scopus 로고
    • Plant cell wall remodelling in the Rhizobium-legume symbiosis
    • Brewin NJ (2004) Plant cell wall remodelling in the Rhizobium-legume symbiosis. Crit Rev Plant Sci 23: 293-316
    • (2004) Crit Rev Plant Sci , vol.23 , pp. 293-316
    • Brewin, N.J.1
  • 8
    • 0015189585 scopus 로고
    • Control of leghaemoglobin synthesis in snake beans
    • Broughton WJ, Dilworth MJ (1971) Control of leghaemoglobin synthesis in snake beans. Biochem J 125: 1075-1080
    • (1971) Biochem J , vol.125 , pp. 1075-1080
    • Broughton, W.J.1    Dilworth, M.J.2
  • 10
    • 0015663937 scopus 로고
    • Transmissible resistance to penicillin G, neomycin, and chloramphenicol in Rhizobium japonicum
    • Cole MA, Elkan GH (1973) Transmissible resistance to penicillin G, neomycin, and chloramphenicol in Rhizobium japonicum. Antimicrob Agents Chemother 4: 248-253
    • (1973) Antimicrob Agents Chemother , vol.4 , pp. 248-253
    • Cole, M.A.1    Elkan, G.H.2
  • 11
    • 4143050209 scopus 로고    scopus 로고
    • Global changes in transcription orchestrate metabolic differentiation during symbiotic nitrogen fixation in Lotus japonicus
    • Colebatch G, Desbrosses G, Ott T, Krusell L, Montanari O, Kloska S, Kopka J, Udvardi MK (2004) Global changes in transcription orchestrate metabolic differentiation during symbiotic nitrogen fixation in Lotus japonicus. Plant J 39: 487-512
    • (2004) Plant J , vol.39 , pp. 487-512
    • Colebatch, G.1    Desbrosses, G.2    Ott, T.3    Krusell, L.4    Montanari, O.5    Kloska, S.6    Kopka, J.7    Udvardi, M.K.8
  • 14
    • 16544376129 scopus 로고    scopus 로고
    • Expression profiling in Medicago truncatula identifies more than 750 genes differentially expressed during nodulation, including many potential regulators of the symbiotic program
    • El Yahyaoui F, Kuster H, Ben Amor B, Hohnjec N, Puhler A, Becker A, Gouzy J, Vernie T, Gough C, Niebel A, et al (2004) Expression profiling in Medicago truncatula identifies more than 750 genes differentially expressed during nodulation, including many potential regulators of the symbiotic program. Plant Physiol 136: 3159-3176
    • (2004) Plant Physiol , vol.136 , pp. 3159-3176
    • El Yahyaoui, F.1    Kuster, H.2    Ben Amor, B.3    Hohnjec, N.4    Puhler, A.5    Becker, A.6    Gouzy, J.7    Vernie, T.8    Gough, C.9    Niebel, A.10    et al11
  • 15
    • 26444452333 scopus 로고    scopus 로고
    • Nodulation phenotypes of gibberellin and brassinosteroid mutants of pea
    • Ferguson BJ, Ross JJ, Reid JB (2005) Nodulation phenotypes of gibberellin and brassinosteroid mutants of pea. Plant Physiol 138: 2396-2405
    • (2005) Plant Physiol , vol.138 , pp. 2396-2405
    • Ferguson, B.J.1    Ross, J.J.2    Reid, J.B.3
  • 17
    • 33745621580 scopus 로고    scopus 로고
    • Nodulation independent of rhizobia induced by a calcium-activated kinase lacking autoinhibition
    • Gleason C, Chaudhuri S, Yang T, Munoz A, Poovaiah BW, Oldroyd GE (2006) Nodulation independent of rhizobia induced by a calcium-activated kinase lacking autoinhibition. Nature 441: 1149-1152
    • (2006) Nature , vol.441 , pp. 1149-1152
    • Gleason, C.1    Chaudhuri, S.2    Yang, T.3    Munoz, A.4    Poovaiah, B.W.5    Oldroyd, G.E.6
  • 19
    • 64749101372 scopus 로고    scopus 로고
    • GRAS proteins form a DNA binding complex to induce gene expression during nodulation signaling in Medicago truncatula
    • Hirsch S, Kim J, Munoz A, Heckmann AB, Downie JA, Oldroyd GE (2009) GRAS proteins form a DNA binding complex to induce gene expression during nodulation signaling in Medicago truncatula. Plant Cell 21: 545-557
    • (2009) Plant Cell , vol.21 , pp. 545-557
    • Hirsch, S.1    Kim, J.2    Munoz, A.3    Heckmann, A.B.4    Downie, J.A.5    Oldroyd, G.E.6
  • 25
    • 6344278694 scopus 로고    scopus 로고
    • Analysis of the root nodule-enhanced transcriptome in soybean
    • Lee H, Hur CG, Oh CJ, Kim HB, Pakr SY, An CS (2004) Analysis of the root nodule-enhanced transcriptome in soybean. Mol Cells 18: 53-62
    • (2004) Mol Cells , vol.18 , pp. 53-62
    • Lee, H.1    Hur, C.G.2    Oh, C.J.3    Kim, H.B.4    Pakr, S.Y.5    An, C.S.6
  • 26
    • 70350680821 scopus 로고    scopus 로고
    • Large-scale analysis of putative soybean regulatory gene expression identifies a Myb gene involved in soybean nodule development
    • Libault M, Joshi T, Takahashi K, Hurley-Sommer A, Puricelli K, Blake S, Xu D, Nguyen H, Stacey G (2009) Large-scale analysis of putative soybean regulatory gene expression identifies a Myb gene involved in soybean nodule development. Plant Physiol 151: 1207-1220
    • (2009) Plant Physiol , vol.151 , pp. 1207-1220
    • Libault, M.1    Joshi, T.2    Takahashi, K.3    Hurley-Sommer, A.4    Puricelli, K.5    Blake, S.6    Xu, D.7    Nguyen, H.8    Stacey, G.9
  • 32
  • 34
    • 0030187484 scopus 로고    scopus 로고
    • Expression of the early nodulin, ENOD40, in soybean roots in response to various lipochitin signal molecules
    • Minami E, Kouchi H, Cohn JR, Ogawa T, Stacey G (1996) Expression of the early nodulin, ENOD40, in soybean roots in response to various lipochitin signal molecules. Plant J 10: 23-32
    • (1996) Plant J , vol.10 , pp. 23-32
    • Minami, E.1    Kouchi, H.2    Cohn, J.R.3    Ogawa, T.4    Stacey, G.5
  • 35
    • 33847768971 scopus 로고    scopus 로고
    • Positional cloning identifies Lotus japonicus NSP2, a putative transcription factor of the GRAS family, required for NIN and ENOD40 gene expression in nodule initiation
    • Murakami Y, Miwa H, Imaizumi-Anraku H, Kouchi H, Downie JA, Kawaguchi M, Kawasaki S (2006) Positional cloning identifies Lotus japonicus NSP2, a putative transcription factor of the GRAS family, required for NIN and ENOD40 gene expression in nodule initiation. DNA Res 13: 255-265
    • (2006) Dna Res , vol.13 , pp. 255-265
    • Murakami, Y.1    Miwa, H.2    Imaizumi-Anraku, H.3    Kouchi, H.4    Downie, J.A.5    Kawaguchi, M.6    Kawasaki, S.7
  • 36
    • 0036669991 scopus 로고    scopus 로고
    • The novel symbiotic phenotype of enhanced-nodulating mutant of Lotus japonicus: Astray mutant is an early nodulating mutant with wider nodulation zone
    • Nishimura R, Ohmori M, Kawaguchi M (2002) The novel symbiotic phenotype of enhanced-nodulating mutant of Lotus japonicus: astray mutant is an early nodulating mutant with wider nodulation zone. Plant Cell Physiol 43: 853-859
    • (2002) Plant Cell Physiol , vol.43 , pp. 853-859
    • Nishimura, R.1    Ohmori, M.2    Kawaguchi, M.3
  • 37
    • 44649141367 scopus 로고    scopus 로고
    • Coordinating nodule morphogenesis with rhizobial infection in legumes
    • Oldroyd GE, Downie JA (2008) Coordinating nodule morphogenesis with rhizobial infection in legumes. Annu Rev Plant Biol 59: 519-546
    • (2008) Annu Rev Plant Biol , vol.59 , pp. 519-546
    • Oldroyd, G.E.1    Downie, J.A.2
  • 38
    • 0037355454 scopus 로고    scopus 로고
    • Identification and characterization of Nodulation-Signaling Pathway 2, a gene of Medicago truncatula involved in Nod factor signaling
    • Oldroyd GE, Long SR (2003) Identification and characterization of Nodulation-Signaling Pathway 2, a gene of Medicago truncatula involved in Nod factor signaling. Plant Physiol 131: 1027-1032
    • (2003) Plant Physiol , vol.131 , pp. 1027-1032
    • Oldroyd, G.E.1    Long, S.R.2
  • 39
    • 70149113077 scopus 로고    scopus 로고
    • R Development Core Team, R Foundation for Statistical Computing, Vienna
    • R Development Core Team (2009) R: a Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna. http://www.R-project.org
    • (2009) R: A Language and Environment For Statistical Computing
  • 41
    • 0037435395 scopus 로고    scopus 로고
    • Assumption- free analysis of quantitative real-time polymerase chain reaction (PCR) data
    • Ramakers C, Ruijter JM, Deprez RH, Moorman AF (2003) Assumption- free analysis of quantitative real-time polymerase chain reaction (PCR) data. Neurosci Lett 339: 62-66
    • (2003) Neurosci Lett , vol.339 , pp. 62-66
    • Ramakers, C.1    Ruijter, J.M.2    Deprez, R.H.3    Moorman, A.F.4
  • 42
    • 0033547409 scopus 로고    scopus 로고
    • A plant regulator controlling development of symbiotic root nodules
    • Schauser L, Roussis A, Stiller J, Stougaard J (1999) A plant regulator controlling development of symbiotic root nodules. Nature 402: 191-195
    • (1999) Nature , vol.402 , pp. 191-195
    • Schauser, L.1    Roussis, A.2    Stiller, J.3    Stougaard, J.4
  • 43
    • 16444378057 scopus 로고    scopus 로고
    • Evolution of NIN-like proteins in Arabidopsis, rice, and Lotus japonicus
    • Schauser L, Wieloch W, Stougaard J (2005) Evolution of NIN-like proteins in Arabidopsis, rice, and Lotus japonicus. J Mol Evol 60: 229-237
    • (2005) J Mol Evol , vol.60 , pp. 229-237
    • Schauser, L.1    Wieloch, W.2    Stougaard, J.3
  • 47
    • 20544441300 scopus 로고    scopus 로고
    • NSP1 of the GRAS protein family is essential for rhizobial Nod factor-induced transcription
    • Smit P, Raedts J, Portyanko V, Debelle F, Gough C, Bisseling T, Geurts R (2005) NSP1 of the GRAS protein family is essential for rhizobial Nod factor-induced transcription. Science 308: 1789-1791
    • (2005) Science , vol.308 , pp. 1789-1791
    • Smit, P.1    Raedts, J.2    Portyanko, V.3    Debelle, F.4    Gough, C.5    Bisseling, T.6    Geurts, R.7
  • 48
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
    • Smyth GK (2004) Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 3: Article 3
    • (2004) Stat Appl Genet Mol Biol 3: Article 3
    • Smyth, G.K.1
  • 49
    • 33644872577 scopus 로고    scopus 로고
    • Limma: Linear models for microarray data
    • In R Gentleman, V Carey, S Dudoit, R Irizarry, W Huber, eds, Springer, New York
    • Smyth GK (2005) Limma: linear models for microarray data. In R Gentleman, V Carey, S Dudoit, R Irizarry, W Huber, eds, Bioinformatics and Computational Biology Solutions using R and Bioconductor. Springer, New York, pp 397-420
    • (2005) Bioinformatics and Computational Biology Solutions Using R and Bioconductor , pp. 397-420
    • Smyth, G.K.1
  • 50
    • 33646846862 scopus 로고    scopus 로고
    • Nitrogen fixation mutants of Medicago truncatula fail to support plant and bacterial symbiotic gene expression
    • Starker CG, Parra-Colmenares AL, Smith L, Mitra RM, Long SR (2006) Nitrogen fixation mutants of Medicago truncatula fail to support plant and bacterial symbiotic gene expression. Plant Physiol 140: 671-680
    • (2006) Plant Physiol , vol.140 , pp. 671-680
    • Starker, C.G.1    Parra-Colmenares, A.L.2    Smith, L.3    Mitra, R.M.4    Long, S.R.5
  • 53
    • 18744383071 scopus 로고    scopus 로고
    • GMAP: A genomic mapping and alignment program for mRNA and EST sequences
    • Wu TD, Watanabe CK (2005) GMAP: a genomic mapping and alignment program for mRNA and EST sequences. Bioinformatics 21: 1859-1875
    • (2005) Bioinformatics , vol.21 , pp. 1859-1875
    • Wu, T.D.1    Watanabe, C.K.2
  • 55
    • 23844551199 scopus 로고    scopus 로고
    • Stochastic models inspired by hybridization theory for short oligonucleotide arrays
    • Wu Z, Irizarry RA (2005) Stochastic models inspired by hybridization theory for short oligonucleotide arrays. J Comput Biol 12: 882-893
    • (2005) J Comput Biol , vol.12 , pp. 882-893
    • Wu, Z.1    Irizarry, R.A.2


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