메뉴 건너뛰기




Volumn 1, Issue 1, 2006, Pages 179-185

Protocol for the fast chromatin immunoprecipitation (ChIP) method

Author keywords

[No Author keywords available]

Indexed keywords

DNA BINDING PROTEIN;

EID: 33847661809     PISSN: 17542189     EISSN: 17502799     Source Type: Journal    
DOI: 10.1038/nprot.2006.27     Document Type: Article
Times cited : (669)

References (30)
  • 1
    • 23044437498 scopus 로고    scopus 로고
    • RNA meets chromatin
    • Bernstein, E. & Allis, C.D. RNA meets chromatin. Genes Dev. 19 1635-1655 (2005).
    • (2005) Genes Dev , vol.19 , pp. 1635-1655
    • Bernstein, E.1    Allis, C.D.2
  • 2
    • 25144495639 scopus 로고    scopus 로고
    • Defining epigenetic states through chromatin and RNA
    • Schubeler, D. & Elgin, S.C. Defining epigenetic states through chromatin and RNA. Nat. Genet. 37, 917-918 (2005).
    • (2005) Nat. Genet , vol.37 , pp. 917-918
    • Schubeler, D.1    Elgin, S.C.2
  • 3
    • 85015069067 scopus 로고    scopus 로고
    • Controlling the double helix
    • Felsenfeld, G. & Groudine, M. Controlling the double helix. Nature 421, 448-453 (2003).
    • (2003) Nature , vol.421 , pp. 448-453
    • Felsenfeld, G.1    Groudine, M.2
  • 4
    • 2342465953 scopus 로고    scopus 로고
    • Recent highlights of RNA-polymerase-II-mediated transcription
    • Sims, R.J. III, Mandal, S.S. & Reinberg, D. Recent highlights of RNA-polymerase-II-mediated transcription. Curr. Opin. Cell Biol. 16, 263-271 (2004).
    • (2004) Curr. Opin. Cell Biol , vol.16 , pp. 263-271
    • Sims III, R.J.1    Mandal, S.S.2    Reinberg, D.3
  • 5
    • 20444391346 scopus 로고    scopus 로고
    • Chromatin in need of a fix: Phosphorylation of H2AX connects chromatin to DNA repair
    • Thiriet, C. & Hayes, J.J. Chromatin in need of a fix: Phosphorylation of H2AX connects chromatin to DNA repair. Mol. Cell 18, 617-622 (2005).
    • (2005) Mol. Cell , vol.18 , pp. 617-622
    • Thiriet, C.1    Hayes, J.J.2
  • 6
    • 0033388858 scopus 로고    scopus 로고
    • In vivo cross-linking and immunoprecipitation for studying dynamic Protein: DNA associations in a chromatin environment
    • Kuo, M.H. & Allis, C.D. In vivo cross-linking and immunoprecipitation for studying dynamic Protein: DNA associations in a chromatin environment. Methods 19, 425-433 (1999).
    • (1999) Methods , vol.19 , pp. 425-433
    • Kuo, M.H.1    Allis, C.D.2
  • 7
    • 0031080378 scopus 로고    scopus 로고
    • Analysis of chromatin structure by in vivo formaldehyde cross-linking
    • Orlando, V., Strutt, H. & Paro, R. Analysis of chromatin structure by in vivo formaldehyde cross-linking. Methods 11, 205-214 (1997).
    • (1997) Methods , vol.11 , pp. 205-214
    • Orlando, V.1    Strutt, H.2    Paro, R.3
  • 8
    • 19944367254 scopus 로고    scopus 로고
    • Defining the CREB regulon: A genome-wide analysis of transcription factor regulatory regions
    • Impey, S. et al. Defining the CREB regulon: A genome-wide analysis of transcription factor regulatory regions. Cell 119, 1041-1054 (2004).
    • (2004) Cell , vol.119 , pp. 1041-1054
    • Impey, S.1
  • 11
    • 2242433534 scopus 로고    scopus 로고
    • A kinetic framework for a mammalian RNA polymerase in vivo
    • Dundr, M. et al. A kinetic framework for a mammalian RNA polymerase in vivo. Science 298, 1623-1626 (2002).
    • (2002) Science , vol.298 , pp. 1623-1626
    • Dundr, M.1
  • 12
    • 0348150714 scopus 로고    scopus 로고
    • Maintenance of stable heterochromatin domains by dynamic HP1 binding
    • Cheutin, T. et al. Maintenance of stable heterochromatin domains by dynamic HP1 binding. Science 299, 721-725 (2003).
    • (2003) Science , vol.299 , pp. 721-725
    • Cheutin, T.1
  • 13
    • 0033617334 scopus 로고    scopus 로고
    • Ordered recruitment of transcription and chromatin remodeling factors to a cell cycle- and developmentally regulated promoter
    • Cosma, M.P., Tanaka, T. & Nasmyth, K. Ordered recruitment of transcription and chromatin remodeling factors to a cell cycle- and developmentally regulated promoter. Cell 97, 299-311 (1999).
    • (1999) Cell , vol.97 , pp. 299-311
    • Cosma, M.P.1    Tanaka, T.2    Nasmyth, K.3
  • 14
    • 26444508841 scopus 로고    scopus 로고
    • Single-nucleosome mapping of histone modifications in S. cerevisiae
    • Liu, C.L. et al. Single-nucleosome mapping of histone modifications in S. cerevisiae. PLoS Biol. 3, e328 (2005).
    • (2005) PLoS Biol , vol.3
    • Liu, C.L.1
  • 15
    • 20844451181 scopus 로고    scopus 로고
    • Transcriptional complexes engaged by apo-estrogen receptor-alpha isoforms have divergent outcomes
    • Metivier, R. et al. Transcriptional complexes engaged by apo-estrogen receptor-alpha isoforms have divergent outcomes. EMBO J. 23, 3653-3666 (2004).
    • (2004) EMBO J , vol.23 , pp. 3653-3666
    • Metivier, R.1
  • 16
    • 24744462507 scopus 로고    scopus 로고
    • EZH2 and histone 3 trimethyl lysine 27 associated with Il4 and Il13 gene silencing in Th1 cells
    • Koyanagi, M. et al. EZH2 and histone 3 trimethyl lysine 27 associated with Il4 and Il13 gene silencing in Th1 cells. J. Biol. Chem. 280, 31470-31477 (2005).
    • (2005) J. Biol. Chem , vol.280 , pp. 31470-31477
    • Koyanagi, M.1
  • 17
    • 0001473216 scopus 로고
    • Formaldehyde-mediated DNA-protein crosslinking: A probe for in vivo chromatin structures
    • Solomon, M.J. & Varshavsky, A. Formaldehyde-mediated DNA-protein crosslinking: A probe for in vivo chromatin structures. Proc. Natl. Acad. Sci. USA 82, 6470-6474 (1985).
    • (1985) Proc. Natl. Acad. Sci. USA , vol.82 , pp. 6470-6474
    • Solomon, M.J.1    Varshavsky, A.2
  • 19
    • 19944430797 scopus 로고    scopus 로고
    • Genomic maps and comparative analysis of histone modifications in human and mouse
    • Bernstein, B.E. et al. Genomic maps and comparative analysis of histone modifications in human and mouse. Cell 120, 169-181 (2005).
    • (2005) Cell , vol.120 , pp. 169-181
    • Bernstein, B.E.1
  • 20
    • 23944462969 scopus 로고    scopus 로고
    • Genome-wide map of nucleosome acetylation and methylation in yeast
    • Pokholok, D.K. et al. Genome-wide map of nucleosome acetylation and methylation in yeast. Cell 122, 517-527 (2005).
    • (2005) Cell , vol.122 , pp. 517-527
    • Pokholok, D.K.1
  • 21
    • 10744226888 scopus 로고    scopus 로고
    • Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs
    • Cawley S. et al. Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs. Cell 116, 499-509 (2004).
    • (2004) Cell , vol.116 , pp. 499-509
    • Cawley, S.1
  • 22
    • 0034161329 scopus 로고    scopus 로고
    • Mapping chromosomal proteins in vivo by formaldehyde-crosslinked-chromatin immunoprecipitation
    • Orlando, V. Mapping chromosomal proteins in vivo by formaldehyde-crosslinked-chromatin immunoprecipitation. Trends Biochem. Sci. 25, 99-104 (2000).
    • (2000) Trends Biochem. Sci , vol.25 , pp. 99-104
    • Orlando, V.1
  • 23
    • 0021671977 scopus 로고
    • Ultrasound-accelerated immunoassay, as exemplified by enzyme immunoassay of choriogonadotropin
    • Chen, R. et al. Ultrasound-accelerated immunoassay, as exemplified by enzyme immunoassay of choriogonadotropin. Clin. Chem. 30, 1446-1451 (1984).
    • (1984) Clin. Chem , vol.30 , pp. 1446-1451
    • Chen, R.1
  • 24
    • 1042265482 scopus 로고    scopus 로고
    • Sequential chromatin immunoprecipitation from animal tissues
    • Chaya, D. & Zaret, K.S. Sequential chromatin immunoprecipitation from animal tissues. Methods Enzymol. 376, 361-372 (2004).
    • (2004) Methods Enzymol , vol.376 , pp. 361-372
    • Chaya, D.1    Zaret, K.S.2
  • 25
    • 8644287437 scopus 로고    scopus 로고
    • Evidence for eviction and rapid deposition of histones upon transcriptional elongation by RNA polymerase II
    • Schwabish, M.A. & Struhl, K. Evidence for eviction and rapid deposition of histones upon transcriptional elongation by RNA polymerase II. Mol. Cell. Biol. 24, 10111-10117 (2004).
    • (2004) Mol. Cell. Biol , vol.24 , pp. 10111-10117
    • Schwabish, M.A.1    Struhl, K.2
  • 26
    • 0036133164 scopus 로고    scopus 로고
    • Yeast hnRNP K-like genes are involved in regulation of the telomeric position effect and telomere length
    • Denisenko, O. & Bomsztyk, K. Yeast hnRNP K-like genes are involved in regulation of the telomeric position effect and telomere length. Mol. Cell. Biol. 22, 286-297 (2002).
    • (2002) Mol. Cell. Biol , vol.22 , pp. 286-297
    • Denisenko, O.1    Bomsztyk, K.2
  • 27
    • 2942518343 scopus 로고    scopus 로고
    • Mapping global histone acetylation patterns to gene expression
    • Kurdistani, S.K., Tavazoie, S. & Grunstein, M. Mapping global histone acetylation patterns to gene expression. Cell 117, 721-733 (2004).
    • (2004) Cell , vol.117 , pp. 721-733
    • Kurdistani, S.K.1    Tavazoie, S.2    Grunstein, M.3
  • 28
    • 3042772071 scopus 로고    scopus 로고
    • RNAPol-ChIP: A novel application of chromatin immunoprecipitation to the analysis of real-time gene transcription
    • Sandoval, J. et al. RNAPol-ChIP: A novel application of chromatin immunoprecipitation to the analysis of real-time gene transcription. Nucleic Acids Res. 32, e88 (2004).
    • (2004) Nucleic Acids Res , vol.32
    • Sandoval, J.1
  • 29
    • 19444373996 scopus 로고    scopus 로고
    • Making the most of affinity tags
    • Waugh, D.S. Making the most of affinity tags. Trends Biotechnol. 23, 316-320 (2005).
    • (2005) Trends Biotechnol , vol.23 , pp. 316-320
    • Waugh, D.S.1
  • 30
    • 0029048527 scopus 로고
    • Description of an IL-1-responsive kinase that phosphorylates the K protein. Enhancement of phosphorylation by sequence-selective DNA and RNA motifs
    • Van Seuningen, I., Ostrowski, J. & Bomsztyk, K. Description of an IL-1-responsive kinase that phosphorylates the K protein. Enhancement of phosphorylation by sequence-selective DNA and RNA motifs. Biochemistry 34, 5644-5650 (1995).
    • (1995) Biochemistry , vol.34 , pp. 5644-5650
    • Van Seuningen, I.1    Ostrowski, J.2    Bomsztyk, K.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.