-
1
-
-
84860406655
-
Structural basis for the dual U4 and U4atac snRNA-binding specificity of spliceosomal protein hPrp31
-
Liu S, Ghalei H, Luhrmann R, Wahl MC. Structural basis for the dual U4 and U4atac snRNA-binding specificity of spliceosomal protein hPrp31. RNA. 2011;17(9):1655-1663.
-
(2011)
RNA
, vol.17
, Issue.9
, pp. 1655-1663
-
-
Liu, S.1
Ghalei, H.2
Luhrmann, R.3
Wahl, M.C.4
-
2
-
-
79957601559
-
Structure of the spliceosomal U4 snRNP core domain and its implication for snRNP biogenesis
-
Leung AK, Nagai K, Li J. Structure of the spliceosomal U4 snRNP core domain and its implication for snRNP biogenesis. Nature. 2011;473(7348):536-539.
-
(2011)
Nature
, vol.473
, Issue.7348
, pp. 536-539
-
-
Leung, A.K.1
Nagai, K.2
Li, J.3
-
3
-
-
27644491082
-
Structures of the bacterial ribosome at 3.5 A resolution
-
Schuwirth BS, Borovinskaya MA, Hau CW, et al. Structures of the bacterial ribosome at 3.5 A resolution. Science. 2005;310(5749):827-834.
-
(2005)
Science
, vol.310
, Issue.5749
, pp. 827-834
-
-
Schuwirth, B.S.1
Borovinskaya, M.A.2
Hau, C.W.3
-
4
-
-
0027518457
-
Ordered duplex RNA controls capsid architecture in an icosahedral animal virus
-
Fisher AJ, Johnson JE. Ordered duplex RNA controls capsid architecture in an icosahedral animal virus. Nature. 1993;361(6408):176-179.
-
(1993)
Nature
, vol.361
, Issue.6408
, pp. 176-179
-
-
Fisher, A.J.1
Johnson, J.E.2
-
5
-
-
0027953618
-
The refined threedimensional structure of an insect virus at 2.8 A resolution
-
Wery JP, Reddy VS, Hosur MV, Johnson JE. The refined threedimensional structure of an insect virus at 2.8 A resolution. J Mol Biol. 1994;235(2):565-586.
-
(1994)
J Mol Biol
, vol.235
, Issue.2
, pp. 565-586
-
-
Wery, J.P.1
Reddy, V.S.2
Hosur, M.V.3
Johnson, J.E.4
-
6
-
-
78649736872
-
A screen for RNA-binding proteins in yeast indicates dual functions for many enzymes
-
Scherrer T, Mittal N, Janga SC, Gerber AP. A screen for RNA-binding proteins in yeast indicates dual functions for many enzymes. PloS One. 2010;5(11):e15499.
-
(2010)
PloS One
, vol.5
, Issue.11
-
-
Scherrer, T.1
Mittal, N.2
Janga, S.C.3
Gerber, A.P.4
-
7
-
-
77958594113
-
Proteome-wide search reveals unexpected RNA-binding proteins in Saccharomyces cerevisiae
-
Tsvetanova NG, Klass DM, Salzman J, Brown PO. Proteome-wide search reveals unexpected RNA-binding proteins in Saccharomyces cerevisiae. PloS One. 2010;5(9):e12671.
-
(2010)
PloS One
, vol.5
, Issue.9
-
-
Tsvetanova, N.G.1
Klass, D.M.2
Salzman, J.3
Brown, P.O.4
-
8
-
-
78649430973
-
Hepatitis C virus nonstructural protein 5A: Biochemical characterization of a novel structural class of RNA-binding proteins
-
Hwang J, Huang L, Cordek DG, et al. Hepatitis C virus nonstructural protein 5A: biochemical characterization of a novel structural class of RNA-binding proteins. J Virol. 2010;84(24): 12480-12491.
-
(2010)
J Virol
, vol.84
, Issue.24
, pp. 12480-12491
-
-
Hwang, J.1
Huang, L.2
Cordek, D.G.3
-
9
-
-
47049114564
-
Single-stranded oligonucleotides can inhibit cytokine production induced by human toll-like receptor 3
-
Ranjith-Kumar CT, Duffy KE, Jordan JL, et al. Single-stranded oligonucleotides can inhibit cytokine production induced by human toll-like receptor 3. Mol Cell Biol. 2008;28(14):4507-4519.
-
(2008)
Mol Cell Biol
, vol.28
, Issue.14
, pp. 4507-4519
-
-
Ranjith-Kumar, C.T.1
Duffy, K.E.2
Jordan, J.L.3
-
10
-
-
59449102889
-
Agonist and antagonist recognition by RIG-I, a cytoplasmic innate immunity receptor
-
Ranjith-Kumar CT, Murali A, Dong W, et al. Agonist and antagonist recognition by RIG-I, a cytoplasmic innate immunity receptor. J Biol Chem. 2009;284(2):1155-1165.
-
(2009)
J Biol Chem
, vol.284
, Issue.2
, pp. 1155-1165
-
-
Ranjith-Kumar, C.T.1
Murali, A.2
Dong, W.3
-
11
-
-
67650700208
-
RNA binding by the brome mosaic virus capsid protein and the regulation of viral RNA accumulation
-
Yi G, Vaughan RC, Yarbrough I, Dharmaiah S, Kao CC. RNA binding by the brome mosaic virus capsid protein and the regulation of viral RNA accumulation. J Mol Biol. 2009;391(2):314-326.
-
(2009)
J Mol Biol
, vol.391
, Issue.2
, pp. 314-326
-
-
Yi, G.1
Vaughan, R.C.2
Yarbrough, I.3
Dharmaiah, S.4
Kao, C.C.5
-
12
-
-
27844523217
-
Functional analysis of RNA binding by the hepatitis C virus RNA-dependent RNA polymerase
-
Kim YC, Russell WK, Ranjith-Kumar CT, Thomson M, Russell DH, Kao CC. Functional analysis of RNA binding by the hepatitis C virus RNA-dependent RNA polymerase. J Biol Chem. 2005;280(45):38011-38019.
-
(2005)
J Biol Chem
, vol.280
, Issue.45
, pp. 38011-38019
-
-
Kim, Y.C.1
Russell, W.K.2
Ranjith-Kumar, C.T.3
Thomson, M.4
Russell, D.H.5
Kao, C.C.6
-
13
-
-
84862494264
-
Identification of RNA-protein interaction networks using PAR-CLIP
-
Ascano M, Hafner M, Cekan P, Gerstberger S, Tuschl T. Identification of RNA-protein interaction networks using PAR-CLIP. Wiley Interdiscip Rev RNA. 2012;3(2):159-177.
-
(2012)
Wiley Interdiscip Rev RNA
, vol.3
, Issue.2
, pp. 159-177
-
-
Ascano, M.1
Hafner, M.2
Cekan, P.3
Gerstberger, S.4
Tuschl, T.5
-
14
-
-
77950920903
-
Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP
-
Hafner M, Landthaler M, Burger L, et al. Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP. Cell. 2010;141(1):129-141.
-
(2010)
Cell
, vol.141
, Issue.1
, pp. 129-141
-
-
Hafner, M.1
Landthaler, M.2
Burger, L.3
-
15
-
-
80055101895
-
PAR-CliP - a method to identify transcriptome-wide the binding sites of RNA binding proteins
-
Hafner M, Landthaler M, Burger L, et al. PAR-CliP - a method to identify transcriptome-wide the binding sites of RNA binding proteins. J Vis Exp. 2010;41:2034.
-
(2034)
J Vis Exp
, vol.2010
, pp. 41
-
-
Hafner, M.1
Landthaler, M.2
Burger, L.3
-
16
-
-
0031080378
-
Analysis of chromatin structure by in vivo formaldehyde cross-linking
-
Orlando V, Strutt H, Paro R. Analysis of chromatin structure by in vivo formaldehyde cross-linking. Methods. 1997;11(2):205-214.
-
(1997)
Methods
, vol.11
, Issue.2
, pp. 205-214
-
-
Orlando, V.1
Strutt, H.2
Paro, R.3
-
17
-
-
0036354884
-
Reversible cross-linking combined with immunoprecipitation to study RNA-protein interactions in vivo
-
Niranjanakumari S, Lasda E, Brazas R, Garcia-Blanco MA. Reversible cross-linking combined with immunoprecipitation to study RNA-protein interactions in vivo. Methods. 2002;26(2):182-190.
-
(2002)
Methods
, vol.26
, Issue.2
, pp. 182-190
-
-
Niranjanakumari, S.1
Lasda, E.2
Brazas, R.3
Garcia-Blanco, M.A.4
-
18
-
-
77954834510
-
The current state of chromatin immunoprecipitation
-
Collas P. The current state of chromatin immunoprecipitation. Mol Biotechnol. 2010;45(1):87-100.
-
(2010)
Mol Biotechnol
, vol.45
, Issue.1
, pp. 87-100
-
-
Collas, P.1
-
19
-
-
0033434080
-
Probability-based protein identification by searching sequence databases using mass spectrometry data
-
Perkins DN, Pappin DJ, Creasy DM, Cottrell JS. Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis. 1999;20(18):3551-3567.
-
(1999)
Electrophoresis
, vol.20
, Issue.18
, pp. 3551-3567
-
-
Perkins, D.N.1
Pappin, D.J.2
Creasy, D.M.3
Cottrell, J.S.4
-
20
-
-
0033565832
-
Role of accurate mass measurement (+/- 10 ppm) in protein identification strategies employing MS or MS/MS and database searching
-
Clauser KR, Baker P, Burlingame AL. Role of accurate mass measurement (+/- 10 ppm) in protein identification strategies employing MS or MS/MS and database searching. Anal Chem. 1999;71(14):2871-2882.
-
(1999)
Anal Chem
, vol.71
, Issue.14
, pp. 2871-2882
-
-
Clauser, K.R.1
Baker, P.2
Burlingame, A.L.3
-
21
-
-
77958487999
-
New insights into structure and replication of the hepatitis C virus and clinical implications
-
Poenisch M, Bartenschlager R. New insights into structure and replication of the hepatitis C virus and clinical implications. Semin Liver Dis. 2010;30(4):333-347.
-
(2010)
Semin Liver Dis
, vol.30
, Issue.4
, pp. 333-347
-
-
Poenisch, M.1
Bartenschlager, R.2
-
22
-
-
77955387583
-
An update on small molecule inhibitors of the HCV NS5B polymerase: Effects on RNA synthesis in vitro and in cultured cells, and potential resistance in viral quasispecies
-
Chinnaswamy S, Cai H, Kao C. An update on small molecule inhibitors of the HCV NS5B polymerase: effects on RNA synthesis in vitro and in cultured cells, and potential resistance in viral quasispecies. Virus Adaptation and Treatment. 2010;2(1):73-89.
-
(2010)
Virus Adaptation and Treatment
, vol.2
, Issue.1
, pp. 73-89
-
-
Chinnaswamy, S.1
Cai, H.2
Kao, C.3
-
23
-
-
77952710499
-
Regulation of de novo-initiated RNA synthesis in hepatitis C virus RNA-dependent RNA polymerase by intermolecular interactions
-
Chinnaswamy S, Murali A, Li P, Fujisaki K, Kao CC. Regulation of de novo-initiated RNA synthesis in hepatitis C virus RNA-dependent RNA polymerase by intermolecular interactions. J Virol. 2010;84(12):5923-5935.
-
(2010)
J Virol
, vol.84
, Issue.12
, pp. 5923-5935
-
-
Chinnaswamy, S.1
Murali, A.2
Li, P.3
Fujisaki, K.4
Kao, C.C.5
-
24
-
-
50649091630
-
A locking mechanism regulates RNA synthesis and host protein interaction by the hepatitis C virus polymerase
-
Chinnaswamy S, Yarbrough I, Palaninathan S, et al. A locking mechanism regulates RNA synthesis and host protein interaction by the hepatitis C virus polymerase. J Biol Chem. 2008;283(29): 20535-20546.
-
(2008)
J Biol Chem
, vol.283
, Issue.29
, pp. 20535-20546
-
-
Chinnaswamy, S.1
Yarbrough, I.2
Palaninathan, S.3
-
25
-
-
0037470586
-
Substrate complexes of hepatitis C virus RNA polymerase (HC-J4): Structural evidence for nucleotide import and de-novo initiation
-
O'Farrell D, Trowbridge R, Rowlands D, Jager J. Substrate complexes of hepatitis C virus RNA polymerase (HC-J4): structural evidence for nucleotide import and de-novo initiation. J Mol Biol. 2003;326(4):1025-1035.
-
(2003)
J Mol Biol
, vol.326
, Issue.4
, pp. 1025-1035
-
-
O'Farrell, D.1
Trowbridge, R.2
Rowlands, D.3
Jager, J.4
-
26
-
-
33745845182
-
Nonstructural protein 5B of hepatitis C virus
-
Lee JH, Nam IY, Myung H. Nonstructural protein 5B of hepatitis C virus. Mol Cells. 2006;21(3):330-336.
-
(2006)
Mol Cells
, vol.21
, Issue.3
, pp. 330-336
-
-
Lee, J.H.1
Nam, I.Y.2
Myung, H.3
-
27
-
-
0034468107
-
Template requirements for RNA synthesis by a recombinant hepatitis C virus RNA-dependent RNA polymerase
-
Kao CC, Yang X, Kline A, Wang QM, Barket D, Heinz BA. Template requirements for RNA synthesis by a recombinant hepatitis C virus RNA-dependent RNA polymerase. J Virol. 2000;74(23):11121-11128.
-
(2000)
J Virol
, vol.74
, Issue.23
, pp. 11121-11128
-
-
Kao, C.C.1
Yang, X.2
Kline, A.3
Wang, Q.M.4
Barket, D.5
Heinz, B.A.6
-
28
-
-
0037130462
-
HCV NS5A interacts with p53 and inhibits p53-mediated apoptosis
-
Lan KH, Sheu ML, Hwang SJ, et al. HCV NS5A interacts with p53 and inhibits p53-mediated apoptosis. Oncogene. 2002;21(31):4801-4811.
-
(2002)
Oncogene
, vol.21
, Issue.31
, pp. 4801-4811
-
-
Lan, K.H.1
Sheu, M.L.2
Hwang, S.J.3
-
29
-
-
33746367134
-
Hepatitis C virus non-structural protein NS5A interacts with FKBP38 and inhibits apoptosis in Huh7 hepatoma cells
-
Wang J, Tong W, Zhang X, et al. Hepatitis C virus non-structural protein NS5A interacts with FKBP38 and inhibits apoptosis in Huh7 hepatoma cells. FEBS Lett. 2006;580(18):4392-4400.
-
(2006)
FEBS Lett
, vol.580
, Issue.18
, pp. 4392-4400
-
-
Wang, J.1
Tong, W.2
Zhang, X.3
-
30
-
-
0037192863
-
Hepatitis C virus (HCV) NS5A binds RNA-dependent RNA polymerase (RdRP) NS5B and modulates RNA-dependent RNA polymerase activity
-
Shirota Y, Luo H, Qin W, et al. Hepatitis C virus (HCV) NS5A binds RNA-dependent RNA polymerase (RdRP) NS5B and modulates RNA-dependent RNA polymerase activity. J Biol Chem. 2002;277(13):11149-11155.
-
(2002)
J Biol Chem
, vol.277
, Issue.13
, pp. 11149-11155
-
-
Shirota, Y.1
Luo, H.2
Qin, W.3
-
31
-
-
13544256508
-
Systematic identification of hepatocellular proteins interacting with NS5A of the hepatitis C virus
-
Ahn J, Chung KS, Kim DU, et al. Systematic identification of hepatocellular proteins interacting with NS5A of the hepatitis C virus. J Biochem Mol Biol. 2004;37(6):741-748.
-
(2004)
J Biochem Mol Biol
, vol.37
, Issue.6
, pp. 741-748
-
-
Ahn, J.1
Chung, K.S.2
Kim, D.U.3
-
32
-
-
82455192239
-
Genotypic and phenotypic analysis of variants resistant to hepatitis C virus nonstructural protein 5A replication complex inhibitor BMS-790052 in humans: In vitro and in vivo correlations
-
Fridell RA, Wang C, Sun JH, et al. Genotypic and phenotypic analysis of variants resistant to hepatitis C virus nonstructural protein 5A replication complex inhibitor BMS-790052 in humans: in vitro and in vivo correlations. Hepatology. 2011;54(6):1924-1935.
-
(2011)
Hepatology
, vol.54
, Issue.6
, pp. 1924-1935
-
-
Fridell, R.A.1
Wang, C.2
Sun, J.H.3
-
33
-
-
19644393931
-
Structure of the zinc-binding domain of an essential component of the hepatitis C virus replicase
-
Tellinghuisen TL, Marcotrigiano J, Rice CM. Structure of the zinc-binding domain of an essential component of the hepatitis C virus replicase. Nature. 2005;435(7040):374-379.
-
(2005)
Nature
, vol.435
, Issue.7040
, pp. 374-379
-
-
Tellinghuisen, T.L.1
Marcotrigiano, J.2
Rice, C.M.3
-
34
-
-
0001913048
-
Predicting protein disorder for N-, C-, and internal regions
-
Li X, Romero P, Rani M, Dunker AK, Obradovic Z. Predicting protein disorder for N-, C-, and internal regions. Genome Inform Ser Workshop Genome Inform. 1999;10:30-40.
-
(1999)
Genome Inform Ser Workshop Genome Inform
, vol.10
, pp. 30-40
-
-
Li, X.1
Romero, P.2
Rani, M.3
Dunker, A.K.4
Obradovic, Z.5
-
35
-
-
0346463036
-
The nonstructural protein 3 protease/helicase requires an intact protease domain to unwind duplex RNA efficiently
-
Frick DN, Rypma RS, Lam AM, Gu B. The nonstructural protein 3 protease/helicase requires an intact protease domain to unwind duplex RNA efficiently. J Biol Chem. 2004;279(2):1269-1280.
-
(2004)
J Biol Chem
, vol.279
, Issue.2
, pp. 1269-1280
-
-
Frick, D.N.1
Rypma, R.S.2
Lam, A.M.3
Gu, B.4
-
36
-
-
19544394438
-
The RNA-unwinding activity of hepatitis C virus non-structural protein 3 (NS3) is positively modulated by its protease domain
-
Gu B, Pruss CM, Gates AT, Khandekar SS. The RNA-unwinding activity of hepatitis C virus non-structural protein 3 (NS3) is positively modulated by its protease domain. Protein Pept Lett. 2005;12(4): 315-321.
-
(2005)
Protein Pept Lett
, vol.12
, Issue.4
, pp. 315-321
-
-
Gu, B.1
Pruss, C.M.2
Gates, A.T.3
Khandekar, S.S.4
-
37
-
-
21644463166
-
Stimulation of hepatitis C virus (HCV) nonstructural protein 3 (NS3) helicase activity by the NS3 protease domain and by HCV RNA-dependent RNA polymerase
-
Zhang C, Cai Z, Kim YC, et al. Stimulation of hepatitis C virus (HCV) nonstructural protein 3 (NS3) helicase activity by the NS3 protease domain and by HCV RNA-dependent RNA polymerase. J Virol. 2005;79(14):8687-8697.
-
(2005)
J Virol
, vol.79
, Issue.14
, pp. 8687-8697
-
-
Zhang, C.1
Cai, Z.2
Kim, Y.C.3
-
38
-
-
0034694918
-
The RNA aptamer-binding site of hepatitis C virus NS3 protease
-
Hwang J, Fauzi H, Fukuda K, et al. The RNA aptamer-binding site of hepatitis C virus NS3 protease. Biochem Biophys Res Commun. 2000;279(2):557-562.
-
(2000)
Biochem Biophys Res Commun
, vol.279
, Issue.2
, pp. 557-562
-
-
Hwang, J.1
Fauzi, H.2
Fukuda, K.3
-
39
-
-
0032518490
-
Hepatitis C virus NS3 RNA helicase domain with a bound oligonucleotide: The crystal structure provides insights into the mode of unwinding
-
Kim JL, Morgenstern KA, Griffith JP, et al. Hepatitis C virus NS3 RNA helicase domain with a bound oligonucleotide: the crystal structure provides insights into the mode of unwinding. Structure. 1998;6(1):89-100.
-
(1998)
Structure
, vol.6
, Issue.1
, pp. 89-100
-
-
Kim, J.L.1
Morgenstern, K.A.2
Griffith, J.P.3
-
40
-
-
78751584740
-
Visualizing ATP-dependent RNA translocation by the NS3 helicase from HCV
-
Appleby TC, Anderson R, Fedorova O, et al. Visualizing ATP-dependent RNA translocation by the NS3 helicase from HCV. J Mol Biol. 2011;405(5):1139-1153.
-
(2011)
J Mol Biol
, vol.405
, Issue.5
, pp. 1139-1153
-
-
Appleby, T.C.1
Anderson, R.2
Fedorova, O.3
-
41
-
-
67649496350
-
Crosslinkers and their utilization for studies ofintermolecular interactions
-
Yakovlev AA. Crosslinkers and their utilization for studies ofintermolecular interactions. Neurochem J. 2009;3(2):139-144.
-
(2009)
Neurochem J
, vol.3
, Issue.2
, pp. 139-144
-
-
Yakovlev, A.A.1
-
42
-
-
10744223820
-
Identification of formaldehyde- induced modifications in proteins: Reactions with model peptides
-
Metz B, Kersten GF, Hoogerhout P, et al. Identification of formaldehyde- induced modifications in proteins: reactions with model peptides. J Biol Chem. 2004;279(8):6235-6243.
-
(2004)
J Biol Chem
, vol.279
, Issue.8
, pp. 6235-6243
-
-
Metz, B.1
Kersten, G.F.2
Hoogerhout, P.3
-
43
-
-
77949353724
-
Structural characterization of formaldehyde-induced cross-links between amino acids and deoxynucleosides and their oligomers
-
Lu K, Ye W, Zhou L, et al. Structural characterization of formaldehyde-induced cross-links between amino acids and deoxynucleosides and their oligomers. J Am Chem Soc. 2010;132(10):3388-3399.
-
(2010)
J Am Chem Soc
, vol.132
, Issue.10
, pp. 3388-3399
-
-
Lu, K.1
Ye, W.2
Zhou, L.3
-
44
-
-
0034651005
-
The specificity of protein-DNA crosslinking by formaldehyde: In vitro and in drosophila embryos
-
Toth J, Biggin MD. The specificity of protein-DNA crosslinking by formaldehyde: in vitro and in drosophila embryos. Nucleic Acids Res. 2000;28(2):e4.
-
(2000)
Nucleic Acids Res
, vol.28
, Issue.2
-
-
Toth, J.1
Biggin, M.D.2
-
45
-
-
4444351886
-
Detecting DNA-binding of proteins in vivo by UV-crosslinking and immunoprecipitation
-
Zhang L, Zhang K, Prandl R, Schoffl F. Detecting DNA-binding of proteins in vivo by UV-crosslinking and immunoprecipitation. Biochem Biophys Res Commun. 2004;322(3):705-711.
-
(2004)
Biochem Biophys Res Commun
, vol.322
, Issue.3
, pp. 705-711
-
-
Zhang, L.1
Zhang, K.2
Prandl, R.3
Schoffl, F.4
-
46
-
-
0035865891
-
Protein-RNA interactions: A structural analysis
-
Jones S, Daley DT, Luscombe NM, Berman HM, Thornton JM. Protein-RNA interactions: a structural analysis. Nucleic Acids Res. 2001;29(4):943-954.
-
(2001)
Nucleic Acids Res
, vol.29
, Issue.4
, pp. 943-954
-
-
Jones, S.1
Daley, D.T.2
Luscombe, N.M.3
Berman, H.M.4
Thornton, J.M.5
-
47
-
-
79251606813
-
ReCLIP (reversible cross-link immuno-precipitation): An efficient method for interrogation of labile protein complexes
-
Smith AL, Friedman DB, Yu H, Carnahan RH, Reynolds AB. ReCLIP (reversible cross-link immuno-precipitation): an efficient method for interrogation of labile protein complexes. PloS One. 2011;6(1):e16206.
-
(2011)
PloS One
, vol.6
, Issue.1
-
-
Smith, A.L.1
Friedman, D.B.2
Yu, H.3
Carnahan, R.H.4
Reynolds, A.B.5
-
48
-
-
0025103931
-
Dissociation rate constant of the biotin- streptavidin complex
-
Piran U, Riordan WJ. Dissociation rate constant of the biotin- streptavidin complex. JImmunol Methods. 1990;133(1):141-143.
-
(1990)
JImmunol Methods
, vol.133
, Issue.1
, pp. 141-143
-
-
Piran, U.1
Riordan, W.J.2
-
49
-
-
0028786434
-
Technetium-99 m labeling of DNA oligonucleotides
-
Hnatowich DJ, Winnard P Jr, Virzi F, et al. Technetium-99 m labeling of DNA oligonucleotides. J Nucl Med. 1995;36(12):2306-2314.
-
(1995)
J Nucl Med
, vol.36
, Issue.12
, pp. 2306-2314
-
-
Hnatowich, D.J.1
Winnard Jr., P.2
Virzi, F.3
-
50
-
-
47749144375
-
Chances and pitfalls of chemical cross-linking with amine-reactive N-hydroxysuccinimide esters
-
Kalkhof S, Sinz A. Chances and pitfalls of chemical cross-linking with amine-reactive N-hydroxysuccinimide esters. Anal Bioanal Chem. 2008;392(1-2):305-312.
-
(2008)
Anal Bioanal Chem
, vol.392
, Issue.1-2
, pp. 305-312
-
-
Kalkhof, S.1
Sinz, A.2
-
51
-
-
0033012003
-
N-hydroxysuccinimide carbonates and carbamates are useful reactive reagents for coupling ligands to lysines on proteins
-
Morpurgo M, Bayer EA, Wilchek M. N-hydroxysuccinimide carbonates and carbamates are useful reactive reagents for coupling ligands to lysines on proteins. J Biochem Biophys Methods. 1999;38(1): 17-28.
-
(1999)
J Biochem Biophys Methods
, vol.38
, Issue.1
, pp. 17-28
-
-
Morpurgo, M.1
Bayer, E.A.2
Wilchek, M.3
-
52
-
-
0013614320
-
A simple method for the quantitative isolation of undegraded high molecular weight ribonucleic acid
-
Barlow JJ, Mathias AP, Williamson R, Gammack DB. A simple method for the quantitative isolation of undegraded high molecular weight ribonucleic acid. Biochem Biophys Res Commun. 1963;13:61-66.
-
(1963)
Biochem Biophys Res Commun
, vol.13
, pp. 61-66
-
-
Barlow, J.J.1
Mathias, A.P.2
Williamson, R.3
Gammack, D.B.4
-
53
-
-
0020949591
-
A method for isolation ofintact, translationally active ribonucleic acid
-
Cathala G, Savouret JF, Mendez B, et al. A method for isolation ofintact, translationally active ribonucleic acid. DNA. 1983;2(4):329-335.
-
(1983)
DNA
, vol.2
, Issue.4
, pp. 329-335
-
-
Cathala, G.1
Savouret, J.F.2
Mendez, B.3
-
54
-
-
0019023345
-
Purification of mouse immunoglobulin heavy-chain messenger RNAs from total myeloma tumor RNA
-
Auffray C, Rougeon F. Purification of mouse immunoglobulin heavy-chain messenger RNAs from total myeloma tumor RNA. Eur J Biochem. 1980;107(2):303-314.
-
(1980)
Eur J Biochem
, vol.107
, Issue.2
, pp. 303-314
-
-
Auffray, C.1
Rougeon, F.2
-
55
-
-
32344432085
-
A comparison of viral RNA-dependent RNA polymerases
-
Ferrer-Orta C, Arias A, Escarmis C, Verdaguer N. A comparison of viral RNA-dependent RNA polymerases. Curr Opin Struct Biol. 2006;16(1):27-34.
-
(2006)
Curr Opin Struct Biol
, vol.16
, Issue.1
, pp. 27-34
-
-
Ferrer-Orta, C.1
Arias, A.2
Escarmis, C.3
Verdaguer, N.4
-
56
-
-
0000096835
-
Click chemistry: Diverse chemical function from a few good reactions
-
Kolb HC, Finn MG, Sharpless KB. Click chemistry: diverse chemical function from a few good reactions. Angew Chem Int Ed Engl. 2001;40(11):2004-2021.
-
(2001)
Angew Chem Int Ed Engl
, vol.40
, Issue.11
, pp. 2004-2021
-
-
Kolb, H.C.1
Finn, M.G.2
Sharpless, K.B.3
-
57
-
-
1942522084
-
Profiling enzyme activities in vivo using click chemistry methods
-
Speers AE, Cravatt BF. Profiling enzyme activities in vivo using click chemistry methods. Chem Biol. 2004;11(4):535-546.
-
(2004)
Chem Biol
, vol.11
, Issue.4
, pp. 535-546
-
-
Speers, A.E.1
Cravatt, B.F.2
-
58
-
-
34447117574
-
High resolution footprinting of the hepatitis C virus polymerase NS5B in complex with RNA
-
Deval J, D'Abramo CM, Zhao Z, et al. High resolution footprinting of the hepatitis C virus polymerase NS5B in complex with RNA. J Biol Chem. 2007;282(23):16907-16916.
-
(2007)
J Biol Chem
, vol.282
, Issue.23
, pp. 16907-16916
-
-
Deval, J.1
D'Abramo, C.M.2
Zhao, Z.3
-
59
-
-
65249106020
-
Ribosomal proteins of Deinococcus radiodurans: Their solvent accessibility and reactivity
-
Running WE, Reilly JP. Ribosomal proteins of Deinococcus radiodurans: their solvent accessibility and reactivity. J Proteome Res. 2009;8(3):1228-1246.
-
(2009)
J Proteome Res
, vol.8
, Issue.3
, pp. 1228-1246
-
-
Running, W.E.1
Reilly, J.P.2
-
60
-
-
79961213851
-
Structural analysis of a prokaryotic ribosome using a novel amidinating cross-linker and mass spectrometry
-
Lauber MA, Reilly JP. Structural analysis of a prokaryotic ribosome using a novel amidinating cross-linker and mass spectrometry. J Proteome Res. 2011;10(8):3604-3616.
-
(2011)
J Proteome Res
, vol.10
, Issue.8
, pp. 3604-3616
-
-
Lauber, M.A.1
Reilly, J.P.2
-
62
-
-
69849100869
-
Probing protein structure by amino acid- specific covalent labeling and mass spectrometry
-
Mendoza VL, Vachet RW. Probing protein structure by amino acid- specific covalent labeling and mass spectrometry. Mass Spectrom Rev. 2009;28(5):785-815.
-
(2009)
Mass Spectrom Rev
, vol.28
, Issue.5
, pp. 785-815
-
-
Mendoza, V.L.1
Vachet, R.W.2
-
63
-
-
0033831774
-
Logos for amino-acid preferences in different backbone packing density regions of protein structural classes
-
Kannan N, Schneider TD, Vishveshwara S. Logos for amino-acid preferences in different backbone packing density regions of protein structural classes. Acta Crystallogr D Biol Crystallogr. 2000;56(Pt 9): 1156-1165.
-
(2000)
Acta Crystallogr D Biol Crystallogr
, vol.56
, Issue.Pt 9
, pp. 1156-1165
-
-
Kannan, N.1
Schneider, T.D.2
Vishveshwara, S.3
-
64
-
-
27144451208
-
Probing the ligand-induced conformational change in HLA-DR1 by selective chemical modification and mass spectrometric mapping
-
Carven GJ, Stern LJ. Probing the ligand-induced conformational change in HLA-DR1 by selective chemical modification and mass spectrometric mapping. Biochemistry. 2005;44(42):13625-13637.
-
(2005)
Biochemistry
, vol.44
, Issue.42
, pp. 13625-13637
-
-
Carven, G.J.1
Stern, L.J.2
-
65
-
-
0026625689
-
Protein surface topology-probing by selective chemical modification and mass spectrometric peptide mapping
-
Suckau D, Mak M, Przybylski M. Protein surface topology-probing by selective chemical modification and mass spectrometric peptide mapping. Proc Natl Acad Sci U S A. 1992;89(12): 5630-5634.
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, Issue.12
, pp. 5630-5634
-
-
Suckau, D.1
Mak, M.2
Przybylski, M.3
-
66
-
-
0000529593
-
Molecular structural effects produced in proteins by reaction with succinic anhydride
-
Habeeb AF, Cassidy HG, Singer SJ. Molecular structural effects produced in proteins by reaction with succinic anhydride. Biochim Biophys Acta. 1958;29(3):587-593.
-
(1958)
Biochim Biophys Acta
, vol.29
, Issue.3
, pp. 587-593
-
-
Habeeb, A.F.1
Cassidy, H.G.2
Singer, S.J.3
-
67
-
-
27944463670
-
Probing protein tertiary structure with amidination
-
Janecki DJ, Beardsley RL, Reilly JP. Probing protein tertiary structure with amidination. Anal Chem. 2005;77(22):7274-7281.
-
(2005)
Anal Chem
, vol.77
, Issue.22
, pp. 7274-7281
-
-
Janecki, D.J.1
Beardsley, R.L.2
Reilly, J.P.3
-
69
-
-
70349970275
-
Correlating the chemical modification of Escherichia coli ribosomal proteins with crystal structure data
-
Liu X, Reilly JP. Correlating the chemical modification of Escherichia coli ribosomal proteins with crystal structure data. J Proteome Res. 2009;8(10):4466-4478.
-
(2009)
J Proteome Res
, vol.8
, Issue.10
, pp. 4466-4478
-
-
Liu, X.1
Reilly, J.P.2
-
70
-
-
0014335149
-
Acetimidation of bovine pancreatic ribonuclease A
-
Reynolds JH. Acetimidation of bovine pancreatic ribonuclease A. Biochemistry. 1968;7(9):3131-3135.
-
(1968)
Biochemistry
, vol.7
, Issue.9
, pp. 3131-3135
-
-
Reynolds, J.H.1
-
71
-
-
0027787550
-
Changes in protein stability upon chemical modification of lysine residues of bovine serum albumin by different reagents
-
Fazili KM, Mir MM, Qasim MA. Changes in protein stability upon chemical modification of lysine residues of bovine serum albumin by different reagents. Biochem Mol Biol Int. 1993;31(5):807-816.
-
(1993)
Biochem Mol Biol Int
, vol.31
, Issue.5
, pp. 807-816
-
-
Fazili, K.M.1
Mir, M.M.2
Qasim, M.A.3
-
72
-
-
0023158671
-
S-methylthioacetimidate is a new reagent for the amidination of proteins at low pH
-
Thumm M, Hoenes J, Pfleiderer G. S-methylthioacetimidate is a new reagent for the amidination of proteins at low pH. Biochim Biophys Acta. 1987;923(2):263-267.
-
(1987)
Biochim Biophys Acta
, vol.923
, Issue.2
, pp. 263-267
-
-
Thumm, M.1
Hoenes, J.2
Pfleiderer, G.3
-
73
-
-
0037274645
-
Quantitation using enhanced signal tags: A technique for comparative proteomics
-
Beardsley RL, Reilly JP. Quantitation using enhanced signal tags: a technique for comparative proteomics. J Proteome Res. 2003;2(1): 15-21.
-
(2003)
J Proteome Res
, vol.2
, Issue.1
, pp. 15-21
-
-
Beardsley, R.L.1
Reilly, J.P.2
-
74
-
-
0030979415
-
Photocross-linking of nucleic acids to associated proteins
-
Meisenheimer KM, Koch TH. Photocross-linking of nucleic acids to associated proteins. Crit Rev Biochem Mol Biol. 1997;32(2): 101-140.
-
(1997)
Crit Rev Biochem Mol Biol
, vol.32
, Issue.2
, pp. 101-140
-
-
Meisenheimer, K.M.1
Koch, T.H.2
-
75
-
-
0036882288
-
Analysis of protein-nucleic acid interactions by photochemical cross-linking and mass spectrometry
-
Steen H, Jensen ON. Analysis of protein-nucleic acid interactions by photochemical cross-linking and mass spectrometry. Mass Spectrom Rev. 2002;21(3):163-182.
-
(2002)
Mass Spectrom Rev
, vol.21
, Issue.3
, pp. 163-182
-
-
Steen, H.1
Jensen, O.N.2
-
76
-
-
0036354777
-
A two-tracked approach to analyze RNA-protein crosslinking sites in native, nonlabeled small nuclear ribonucleoprotein particles
-
Urlaub H, Hartmuth K, Luhrmann R. A two-tracked approach to analyze RNA-protein crosslinking sites in native, nonlabeled small nuclear ribonucleoprotein particles. Methods. 2002;26(2):170-181.
-
(2002)
Methods
, vol.26
, Issue.2
, pp. 170-181
-
-
Urlaub, H.1
Hartmuth, K.2
Luhrmann, R.3
-
77
-
-
34548650202
-
Improved identification of enriched peptide RNA cross-links from ribonucleoprotein particles (RNPs) by mass spectrometry
-
Kuhn-Holsken E, Dybkov O, Sander B, Luhrmann R, Urlaub H. Improved identification of enriched peptide RNA cross-links from ribonucleoprotein particles (RNPs) by mass spectrometry. Nucleic Acids Res. 2007;35(15):e95.
-
(2007)
Nucleic Acids Res
, vol.35
, Issue.15
-
-
Kuhn-Holsken, E.1
Dybkov, O.2
Sander, B.3
Luhrmann, R.4
Urlaub, H.5
-
78
-
-
28344439968
-
Complete MALDI-ToF MS analysis of cross-linked peptide-RNA oligo-nucleotides derived from nonlabeled UV-irradiated ribonucleoprotein particles
-
Kuhn-Holsken E, Lenz C, Sander B, Luhrmann R, Urlaub H. Complete MALDI-ToF MS analysis of cross-linked peptide-RNA oligo-nucleotides derived from nonlabeled UV-irradiated ribonucleoprotein particles. RNA. 2005;11(12):1915-1930.
-
(2005)
RNA
, vol.11
, Issue.12
, pp. 1915-1930
-
-
Kuhn-Holsken, E.1
Lenz, C.2
Sander, B.3
Luhrmann, R.4
Urlaub, H.5
-
79
-
-
34247235196
-
Detection of protein-RNA crosslinks by NanoLC-ESI-MS/MS using precursor ion scanning and multiple reaction monitoring (MRM) experiments
-
Lenz C, Kuhn-Holsken E, Urlaub H. Detection of protein-RNA crosslinks by NanoLC-ESI-MS/MS using precursor ion scanning and multiple reaction monitoring (MRM) experiments. J Am Soc Mass Spectrom. 2007;18(5):869-881.
-
(2007)
J Am Soc Mass Spectrom
, vol.18
, Issue.5
, pp. 869-881
-
-
Lenz, C.1
Kuhn-Holsken, E.2
Urlaub, H.3
-
80
-
-
0029812647
-
Characterization of peptide-oligonucleotide heteroconjugates by mass spectrometry
-
Jensen ON, Kulkarni S, Aldrich JV, Barofsky DF. Characterization of peptide-oligonucleotide heteroconjugates by mass spectrometry. Nucleic Acids Res. 1996;24(19):3866-3872.
-
(1996)
Nucleic Acids Res
, vol.24
, Issue.19
, pp. 3866-3872
-
-
Jensen, O.N.1
Kulkarni, S.2
Aldrich, J.V.3
Barofsky, D.F.4
-
81
-
-
19444371218
-
A novel strategy for the identification of protein-DNA contacts by photocrosslinking and mass spectrometry
-
Geyer H, Geyer R, Pingoud V. A novel strategy for the identification of protein-DNA contacts by photocrosslinking and mass spectrometry. Nucleic Acids Res. 2004;32(16):e132.
-
(2004)
Nucleic Acids Res
, vol.32
, Issue.16
-
-
Geyer, H.1
Geyer, R.2
Pingoud, V.3
-
82
-
-
0033435101
-
Mass spectral characterization of a protein-nucleic acid photocrosslink
-
Golden MC, Resing KA, Collins BD, Willis MC, Koch TH. Mass spectral characterization of a protein-nucleic acid photocrosslink. Protein Sci. 1999;8(12):2806-2812.
-
(1999)
Protein Sci
, vol.8
, Issue.12
, pp. 2806-2812
-
-
Golden, M.C.1
Resing, K.A.2
Collins, B.D.3
Willis, M.C.4
Koch, T.H.5
-
83
-
-
65249128115
-
Enrichment of protein-RNA crosslinks from crude UV-irradiated mixtures for MS analysis by on-line chromatography using titanium dioxide columns
-
Martin Richter F, Hsiao HH, Plessmann U, Urlaub H. Enrichment of protein-RNA crosslinks from crude UV-irradiated mixtures for MS analysis by on-line chromatography using titanium dioxide columns. Biopolymers. 2009;91(4):297-309.
-
(2009)
Biopolymers
, vol.91
, Issue.4
, pp. 297-309
-
-
Martin, R.F.1
Hsiao, H.H.2
Plessmann, U.3
Urlaub, H.4
-
84
-
-
79959753328
-
Sequence analysis of peptide:Oligonucleotide heteroconjugates by electron capture dissociation and electron transfer dissociation
-
Krivos KL, Limbach PA. Sequence analysis of peptide:oligonucleotide heteroconjugates by electron capture dissociation and electron transfer dissociation. J Am Soc Mass Spectrom. 2010;21(8):1387-1397.
-
(2010)
J Am Soc Mass Spectrom
, vol.21
, Issue.8
, pp. 1387-1397
-
-
Krivos, K.L.1
Limbach, P.A.2
-
85
-
-
72849106592
-
RNA processing and its regulation: Global insights into biological networks
-
Licatalosi DD, Darnell RB. RNA processing and its regulation: global insights into biological networks. Nat Rev Genet. 2010;11(1):75-87.
-
(2010)
Nat Rev Genet
, vol.11
, Issue.1
, pp. 75-87
-
-
Licatalosi, D.D.1
Darnell, R.B.2
-
86
-
-
79960611669
-
Exploring RNA structural codes with SHAPE chemistry
-
Weeks KM, Mauger DM. Exploring RNA structural codes with SHAPE chemistry. Acc Chem Res. 2011;44(12):1280-1291.
-
(2011)
Acc Chem Res
, vol.44
, Issue.12
, pp. 1280-1291
-
-
Weeks, K.M.1
Mauger, D.M.2
-
87
-
-
84857430764
-
The viral and cellular microRNA targetome in lymphoblastoid cell lines
-
Skalsky RL, Corcoran DL, Gottwein E, et al. The viral and cellular microRNA targetome in lymphoblastoid cell lines. PLoS Pathog. 2012;8(1):e1002484.
-
(2012)
PLoS Pathog
, vol.8
, Issue.1
-
-
Skalsky, R.L.1
Corcoran, D.L.2
Gottwein, E.3
-
88
-
-
85011942477
-
The miRNA-targetome of KSHV and EBV in human B-cells
-
Malterer G, Dolken L, Haas J. The miRNA-targetome of KSHV and EBV in human B-cells. RNA Biol. 2011;8(1):30-34.
-
(2011)
RNA Biol
, vol.8
, Issue.1
, pp. 30-34
-
-
Malterer, G.1
Dolken, L.2
Haas, J.3
-
89
-
-
79960929333
-
Transcriptome-wide analysis of regulatory interactions of the RNA-binding protein HuR
-
Lebedeva S, Jens M, Theil K, et al. Transcriptome-wide analysis of regulatory interactions of the RNA-binding protein HuR. Mol Cell. 2011;43(3):340-352.
-
(2011)
Mol Cell
, vol.43
, Issue.3
, pp. 340-352
-
-
Lebedeva, S.1
Jens, M.2
Theil, K.3
-
90
-
-
83455219453
-
In vivo and transcriptome- wide identification of RNA binding protein target sites
-
Jungkamp AC, Stoeckius M, Mecenas D, et al. In vivo and transcriptome- wide identification of RNA binding protein target sites. Mol Cell. 2011;44(5):828-840.
-
(2011)
Mol Cell
, vol.44
, Issue.5
, pp. 828-840
-
-
Jungkamp, A.C.1
Stoeckius, M.2
Mecenas, D.3
-
91
-
-
82955236089
-
RNA targets of wild-type and mutant FET family proteins
-
Hoell JI, Larsson E, Runge S, et al. RNA targets of wild-type and mutant FET family proteins. Nat Struct Mol Biol. 2011;18(12):1428-1431.
-
(2011)
Nat Struct Mol Biol
, vol.18
, Issue.12
, pp. 1428-1431
-
-
Hoell, J.I.1
Larsson, E.2
Runge, S.3
-
92
-
-
81755161195
-
Viral microRNA targetome of KSHV-infected primary effusion lymphoma cell lines
-
Gottwein E, Corcoran DL, Mukherjee N, et al. Viral microRNA targetome of KSHV-infected primary effusion lymphoma cell lines. Cell Host Microbe. 2011;10(5):515-526.
-
(2011)
Cell Host Microbe
, vol.10
, Issue.5
, pp. 515-526
-
-
Gottwein, E.1
Corcoran, D.L.2
Mukherjee, N.3
-
93
-
-
33644873919
-
VIPERdb: A relational database for structural virology
-
Shepherd CM, Borelli IA, Lander G, et al. VIPERdb: a relational database for structural virology. Nucleic Acids Res. 2006;34(Database issue): D386-D389.
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.Database issue
-
-
Shepherd, C.M.1
Borelli, I.A.2
Lander, G.3
|