메뉴 건너뛰기




Volumn 21, Issue 3, 2002, Pages 163-182

Analysis of protein-nucleic acid interactions by photochemical cross-linking and mass spectrometry

Author keywords

Cross linking; Electrospray; MALDI; Oligonucleotides; Proteins

Indexed keywords

AMINO ACIDS; MASS SPECTROMETRY; PHOTOCHEMICAL REACTIONS; PROTEINS;

EID: 0036882288     PISSN: 02777037     EISSN: None     Source Type: Journal    
DOI: 10.1002/mas.10024     Document Type: Article
Times cited : (58)

References (87)
  • 1
    • 0012596056 scopus 로고
    • Cross-linking of deoxyribonucleic acids to protein following ultra-violet irradiation of different cells
    • Alexander P, Moroson H. 1962. Cross-linking of deoxyribonucleic acids to protein following ultra-violet irradiation of different cells. Nature 194:882-883.
    • (1962) Nature , vol.194 , pp. 882-883
    • Alexander, P.1    Moroson, H.2
  • 2
    • 0034637111 scopus 로고    scopus 로고
    • The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution
    • Ban N, Nissen P, Hansen J, Moore PB, Steitz TA. 2000. The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution. Science 289:905-920.
    • (2000) Science , vol.289 , pp. 905-920
    • Ban, N.1    Nissen, P.2    Hansen, J.3    Moore, P.B.4    Steitz, T.A.5
  • 3
    • 0035263299 scopus 로고    scopus 로고
    • Electrospray ionization mass spectrometry of oligonucleotide complexes with drugs, metals, and proteins
    • Beck JL, Colgrave ML, Ralph SF, Sheil MM. 2001. Electrospray ionization mass spectrometry of oligonucleotide complexes with drugs, metals, and proteins. Mass Spectrom Rev 20:61-87.
    • (2001) Mass Spectrom Rev , vol.20 , pp. 61-87
    • Beck, J.L.1    Colgrave, M.L.2    Ralph, S.F.3    Sheil, M.M.4
  • 4
    • 0027993592 scopus 로고
    • UV-catalyzed cross-linking of Escherichia coli uracil-DNA glycosylase to DNA. Identification of amino acid residues in the single-stranded DNA binding site
    • Bennett SE, Jensen ON, Barofsky DF, Mosbaugh DW. 1994. UV-catalyzed cross-linking of Escherichia coli uracil-DNA glycosylase to DNA. Identification of amino acid residues in the single-stranded DNA binding site. J Biol Chem 269:21870-21879.
    • (1994) J Biol Chem , vol.269 , pp. 21870-21879
    • Bennett, S.E.1    Jensen, O.N.2    Barofsky, D.F.3    Mosbaugh, D.W.4
  • 5
    • 0023804303 scopus 로고
    • Contributions of mass spectrometry to peptide and protein structure
    • Biemann K. 1988. Contributions of mass spectrometry to peptide and protein structure. Biomed Environ Mass Spectrom 16:99-111.
    • (1988) Biomed Environ Mass Spectrom , vol.16 , pp. 99-111
    • Biemann, K.1
  • 6
    • 0012503993 scopus 로고    scopus 로고
    • RNA-ligand interactions, Part A
    • Celander DW, Abelson JN, editors; San Diego: Academic Press
    • Celander DW, Abelson JN, editors. 2000a. RNA-ligand interactions, Part A. Methods in enzymology, Vol. 317. San Diego: Academic Press.
    • (2000) Methods in Enzymology , vol.317
  • 7
    • 0012503993 scopus 로고    scopus 로고
    • RNA-ligand interactions, Part B
    • Celander DW, Abelson JN, editors; San Diego: Academic Press
    • Celander DW, Abelson JN, editors. 2000b. RNA-ligand interactions, Part B. Methods in enzymology, San Diego: Academic Press.
    • (2000) Methods in Enzymology , vol.318
  • 8
    • 0035337809 scopus 로고    scopus 로고
    • Assay of protein tyrosine phosphatases by using matrix-assisted laser desorption ionization time-of-flight mass spectrometry
    • Chen J, Qi Y, Zhao R, Zhou GW, Zhao ZJ. 2001. Assay of protein tyrosine phosphatases by using matrix-assisted laser desorption ionization time-of-flight mass spectrometry. Anal Biochem 292:51-58.
    • (2001) Anal Biochem , vol.292 , pp. 51-58
    • Chen, J.1    Qi, Y.2    Zhao, R.3    Zhou, G.W.4    Zhao, Z.J.5
  • 9
    • 0032112052 scopus 로고    scopus 로고
    • UV light-induced cross-linking of nucleosides, nucleotides and a dinucleotide to the carboxy-terminal heptad repeat peptide of RNA polymerase II as studied by mass spectrometry
    • Connor DA, Falic AM, Shetlar MD. 1998. UV light-induced cross-linking of nucleosides, nucleotides and a dinucleotide to the carboxy-terminal heptad repeat peptide of RNA polymerase II as studied by mass spectrometry. Photochem Photobiol 68:1-8
    • (1998) Photochem Photobiol , vol.68 , pp. 1-8
    • Connor, D.A.1    Falic, A.M.2    Shetlar, M.D.3
  • 10
    • 0032161944 scopus 로고    scopus 로고
    • Probing the binding region of the single-stranded DNA-binding domain of rat DNA polymerase beta using nanosecond-pulse laser-induced cross-linking and mass spectrometry
    • Connor DA, Falick AM, Young MC, Shetlar MD. 1998. Probing the binding region of the single-stranded DNA-binding domain of rat DNA polymerase beta using nanosecond-pulse laser-induced cross-linking and mass spectrometry. Photochem Photobiol 68:299-308.
    • (1998) Photochem Photobiol , vol.68 , pp. 299-308
    • Connor, D.A.1    Falick, A.M.2    Young, M.C.3    Shetlar, M.D.4
  • 11
    • 0001784039 scopus 로고
    • LC/MS and LC/MS/MS screening for the sites of post-translational modifications in proteins
    • In: Jörnvall H, Höög J-O, Gustavsson A-M, editors; Basel: Birkhäuser Verlag
    • Covey T, Shushan B, Bonner R, Schröder W, Hucho F. 1991. LC/MS and LC/MS/MS screening for the sites of post-translational modifications in proteins. In: Jörnvall H, Höög J-O, Gustavsson A-M, editors. Methods in protein sequence analysis. Basel: Birkhäuser Verlag; pp 249-256.
    • (1991) Methods in Protein Sequence Analysis , pp. 249-256
    • Covey, T.1    Shushan, B.2    Bonner, R.3    Schröder, W.4    Hucho, F.5
  • 12
    • 0032763869 scopus 로고    scopus 로고
    • Analysis of transcription complexes and effects of ligands by microelectrospray ionization mass spectrometry
    • Craig TA, Benson LM, Tomlinson AJ, Veenstra TD, Naylor S, Kumar R. 1999. Analysis of transcription complexes and effects of ligands by microelectrospray ionization mass spectrometry. Nat Biotechnol 17:1214-1218.
    • (1999) Nat Biotechnol , vol.17 , pp. 1214-1218
    • Craig, T.A.1    Benson, L.M.2    Tomlinson, A.J.3    Veenstra, T.D.4    Naylor, S.5    Kumar, R.6
  • 13
    • 0034615978 scopus 로고    scopus 로고
    • Mapping of the 5'-2-deoxyribose-5-phosphate lyase active site in DNA polymerase beta by mass spectrometry
    • Deterding LJ, Prasad R, Mullen GP, Wilson SH, Tomer KB. 2000. Mapping of the 5'-2-deoxyribose-5-phosphate lyase active site in DNA polymerase beta by mass spectrometry. J Biol Chem 275:10463-10471.
    • (2000) J Biol Chem , vol.275 , pp. 10463-10471
    • Deterding, L.J.1    Prasad, R.2    Mullen, G.P.3    Wilson, S.H.4    Tomer, K.B.5
  • 14
    • 0023478173 scopus 로고
    • Photochemical coupling of 5-bromouracil to tryptophan, tyrosine, and histidine, peptide-like derivatives in aqueous fluid solution
    • Dietz TM, Koch TH. 1987. Photochemical coupling of 5-bromouracil to tryptophan, tyrosine, and histidine, peptide-like derivatives in aqueous fluid solution. Photochem Photobiol 46:971-978.
    • (1987) Photochem Photobiol , vol.46 , pp. 971-978
    • Dietz, T.M.1    Koch, T.H.2
  • 15
    • 0032478275 scopus 로고    scopus 로고
    • Site-specific cross-linking of amino acids in the basic region of human immunodeficiency virus type 1 Tat peptide to chemically modified TAR RNA duplexes
    • Farrow MA, Aboul-ela F, Owen D, Karpeisky A, Beigelman L, Gait MJ. 1998. Site-specific cross-linking of amino acids in the basic region of human immunodeficiency virus type 1 Tat peptide to chemically modified TAR RNA duplexes. Biochemistry 37:3096-3108.
    • (1998) Biochemistry , vol.37 , pp. 3096-3108
    • Farrow, M.A.1    Aboul-ela, F.2    Owen, D.3    Karpeisky, A.4    Beigelman, L.5    Gait, M.J.6
  • 16
    • 0002855274 scopus 로고
    • 4-thiouridine as an intrinsic photoaffinity probe of nucleic acid structure and interactions
    • In: Morrison H, editor.; New York: John Whiley
    • Favre A. 1990. 4-Thiouridine as an intrinsic photoaffinity probe of nucleic acid structure and interactions. In: Morrison H, editor. Bioorganic photochemistry. New York: John Whiley; pp 379-425.
    • (1990) Bioorganic Photochemistry , pp. 379-425
    • Favre, A.1
  • 17
    • 0032005336 scopus 로고    scopus 로고
    • Thionucleobases as intrinsic photoaffinity probes of nucleic acid structure and nucleic acid-protein interactions
    • Favre A, Saintome C, Fourrey J, Clivio P, Laugaa P, 1998. Thionucleobases as intrinsic photoaffinity probes of nucleic acid structure and nucleic acid-protein interactions. J Photochem Photobiol 42:106-124.
    • (1998) J Photochem Photobiol , vol.42 , pp. 106-124
    • Favre, A.1    Saintome, C.2    Fourrey, J.3    Clivio, P.4    Laugaa, P.5
  • 18
    • 0024438708 scopus 로고
    • Electrospray ionization for mass spectrometry of large biomolecules
    • Fenn JB, Mann M, Meng CK, Wong SF, Whitehouse CM. 1989. Electrospray ionization for mass spectrometry of large biomolecules. Science 246:64-71.
    • (1989) Science , vol.246 , pp. 64-71
    • Fenn, J.B.1    Mann, M.2    Meng, C.K.3    Wong, S.F.4    Whitehouse, C.M.5
  • 20
    • 0042478301 scopus 로고    scopus 로고
    • The initial ion velocity and its dependence on matrix, analyte and preparation method in ultraviolet matrix-assisted laser desorption/ionization
    • Glückmann M, Karas M. 1999. The initial ion velocity and its dependence on matrix, analyte and preparation method in ultraviolet matrix-assisted laser desorption/ionization. J Mass Spectrom 34:467-477.
    • (1999) J Mass Spectrom , vol.34 , pp. 467-477
    • Glückmann, M.1    Karas, M.2
  • 21
    • 0033057707 scopus 로고    scopus 로고
    • Sample purification and preparation technique based on nano-scale reversed-phase columns for the sensitive analysis of complex peptide mixtures by matrix-assisted laser desorption/ionization mass spectrometry
    • Gobom J, Nordhoff E, Mirgorodskaya E, Ekman R, Roepstorff P. 1999. Sample purification and preparation technique based on nano-scale reversed-phase columns for the sensitive analysis of complex peptide mixtures by matrix-assisted laser desorption/ionization mass spectrometry. J Mass Spectrom 34:105-116.
    • (1999) J Mass Spectrom , vol.34 , pp. 105-116
    • Gobom, J.1    Nordhoff, E.2    Mirgorodskaya, E.3    Ekman, R.4    Roepstorff, P.5
  • 22
    • 0033435101 scopus 로고    scopus 로고
    • Mass spectral characterization of a protein-nucleic acid photo-crosslink
    • Golden M, Resing K, Collins B, Willis M, Koch T. 1999. Mass spectral characterization of a protein-nucleic acid photo-crosslink. Protein Sci 8:2806-2812.
    • (1999) Protein Sci , vol.8 , pp. 2806-2812
    • Golden, M.1    Resing, K.2    Collins, B.3    Willis, M.4    Koch, T.5
  • 24
    • 0035241691 scopus 로고    scopus 로고
    • Analysis of noncovalent complexes of DNA and RNA by mass spectrometry
    • Hofstadler SA, Griffey RH. 2001. Analysis of noncovalent complexes of DNA and RNA by mass spectrometry. Chem Rev 101:377-390.
    • (2001) Chem Rev , vol.101 , pp. 377-390
    • Hofstadler, S.A.1    Griffey, R.H.2
  • 25
    • 0033591334 scopus 로고    scopus 로고
    • Identification of the 21 binding site for the extrahelical target base in N6-adenine DNA methyltransferases by photo-cross-linking with duplex oligodeoxyribonucleotides containing 5-iodouracil at the target position
    • Holz B, Dank N, Eickhoff J, Lipps G, Krauss G, Weinhold E. 1999. Identification of the 21 binding site for the extrahelical target base in N6-adenine DNA methyltransferases by photo-cross-linking with duplex oligodeoxyribonucleotides containing 5-iodouracil at the target position. J Biol Chem 274:15066-15072.
    • (1999) J Biol Chem , vol.274 , pp. 15066-15072
    • Holz, B.1    Dank, N.2    Eickhoff, J.3    Lipps, G.4    Krauss, G.5    Weinhold, E.6
  • 26
    • 33847085379 scopus 로고
    • Acetone-sensitized photo-coupling of 5-bromouridine to tryptophan derivatives via electron-transfer process
    • Ito S, Saito I, Matsuura T. 1980. Acetone-sensitized photo-coupling of 5-bromouridine to tryptophan derivatives via electron-transfer process. J Am Chem Soc 102:7535-7541.
    • (1980) J Am Chem Soc , vol.102 , pp. 7535-7541
    • Ito, S.1    Saito, I.2    Matsuura, T.3
  • 27
    • 25344465120 scopus 로고
    • Characterization of photochemically cross linked protein-nucleic acid complexes by mass spectrometry
    • Ph.D. Thesis. Oregon State University, Corvalis
    • Jensen ON. 1994. Characterization of photochemically cross linked protein-nucleic acid complexes by mass spectrometry. Ph.D. Thesis. Oregon State University, Corvalis.
    • (1994)
    • Jensen, O.N.1
  • 28
    • 0027619076 scopus 로고
    • Direct observation of UV-crosslinked protein-nucleic acid complexes by matrix-assisted laser desorption ionization mass spectrometry
    • Jensen ON, Barofsky DF, Young MC, von Hippel PH, Swenson S, Seifried SE. 1993. Direct observation of UV-crosslinked protein-nucleic acid complexes by matrix-assisted laser desorption ionization mass spectrometry. Rapid Commun Mass Spectrom 7:496-501.
    • (1993) Rapid Commun Mass Spectrom , vol.7 , pp. 496-501
    • Jensen, O.N.1    Barofsky, D.F.2    Young, M.C.3    Von Hippel, P.H.4    Swenson, S.5    Seifried, S.E.6
  • 29
    • 0029812647 scopus 로고    scopus 로고
    • Characterization of peptide-oligonucleotide heteroconjugates by mass spectrometry
    • Jensen ON, Kulkarni S, Aldrich JV, Barofsky DF. 1996. Characterization of peptide-oligonucleotide heteroconjugates by mass spectrometry. Nucleic Acids Res 24:3866-3872.
    • (1996) Nucleic Acids Res , vol.24 , pp. 3866-3872
    • Jensen, O.N.1    Kulkarni, S.2    Aldrich, J.V.3    Barofsky, D.F.4
  • 30
    • 0343775584 scopus 로고    scopus 로고
    • Ionization in matrix-assisted laser desorption/ionization: Singly charged molecular ions are the lucky survivors
    • Karas M, Gluckmann M, Schafer J. 2000. Ionization in matrix-assisted laser desorption/ionization: Singly charged molecular ions are the lucky survivors. J Mass Spectrom 35:1-12.
    • (2000) J Mass Spectrom , vol.35 , pp. 1-12
    • Karas, M.1    Gluckmann, M.2    Schafer, J.3
  • 31
    • 0024289037 scopus 로고
    • Laser desorption ionization of proteins with molecular masses exceeding 10,000 daltons
    • Karsa M, Hillenkamp F. 1988. Laser desorption ionization of proteins with molecular masses exceeding 10,000 daltons. Anal Chem 60:2299-2301.
    • (1988) Anal Chem , vol.60 , pp. 2299-2301
    • Karas, M.1    Hillenkamp, F.2
  • 33
    • 0027679408 scopus 로고
    • Mass spectrometric sequencing of linear peptides by product-ion analysis in a reflectron time-of-flight mass sectrometer using matrix-assisted laser desorption ionization
    • Kaufmann R, Spengler B, Lützenkirchen F. 1993. Mass spectrometric sequencing of linear peptides by product-ion analysis in a reflectron time-of-flight mass sectrometer using matrix-assisted laser desorption ionization. Rapid Commun Mass Spectrom 7:902-910.
    • (1993) Rapid Commun Mass Spectrom , vol.7 , pp. 902-910
    • Kaufmann, R.1    Spengler, B.2    Lützenkirchen, F.3
  • 34
    • 0031923654 scopus 로고    scopus 로고
    • Orthogonal injection of matrix-assisted laser desorption/ionization ions into a time-of-flight spectrometer through a collisional damping interface
    • Krutchinsky AN, Loboda AV, Spicer VL, Dworschak R, Ens W, Standing KG. 1998. Orthogonal injection of matrix-assisted laser desorption/ionization ions into a time-of-flight spectrometer through a collisional damping interface. Rapid Commun Mass Spectrom 12:508-518.
    • (1998) Rapid Commun Mass Spectrom , vol.12 , pp. 508-518
    • Krutchinsky, A.N.1    Loboda, A.V.2    Spicer, V.L.3    Dworschak, R.4    Ens, W.5    Standing, K.G.6
  • 37
    • 0030621966 scopus 로고    scopus 로고
    • Studying noncovalent protein complexes by electrospray ionization mass spectrometry
    • Loo JA. 1997. Studying noncovalent protein complexes by electrospray ionization mass spectrometry. Mass Spectrom Rev 16:1-23.
    • (1997) Mass Spectrom Rev , vol.16 , pp. 1-23
    • Loo, J.A.1
  • 38
    • 1842411320 scopus 로고    scopus 로고
    • Crystal structure of the nucleosome core particle at 2.8 Å resolution
    • Luger K, Mader AW, Richmond RK, Sargent DF, Richmond TJ. 1997. Crystal structure of the nucleosome core particle at 2.8 Å resolution. Nature 389:251-260.
    • (1997) Nature , vol.389 , pp. 251-260
    • Luger, K.1    Mader, A.W.2    Richmond, R.K.3    Sargent, D.F.4    Richmond, T.J.5
  • 39
    • 0034923505 scopus 로고    scopus 로고
    • Analysis of proteins and proteomes by mass spectrometry
    • Mann M, Hendrickson RC, Pandey A. 2001. Analysis of proteins and proteomes by mass spectrometry. Annu Rev Biochem 70:437-473.
    • (2001) Annu Rev Biochem , vol.70 , pp. 437-473
    • Mann, M.1    Hendrickson, R.C.2    Pandey, A.3
  • 40
    • 0031623267 scopus 로고    scopus 로고
    • Fourier transform ion cyclotron resonance mass spectrometry: A primer
    • Marshall AG, Hendrickson CL, Jackson GS. 1998. Fourier transform ion cyclotron resonance mass spectrometry: A primer. Mass Spectrom Rev 17:1-35.
    • (1998) Mass Spectrom Rev , vol.17 , pp. 1-35
    • Marshall, A.G.1    Hendrickson, C.L.2    Jackson, G.S.3
  • 41
    • 44049123270 scopus 로고
    • Tandem mass spectrometry of small multiply charged oligonucleotides
    • McLuckey S, Van Berkel GJ, Glish GL. 1992. Tandem mass spectrometry of small multiply charged oligonucleotides. J Am Soc Mass Spectrom 3:60-70.
    • (1992) J Am Soc Mass Spectrom , vol.3 , pp. 60-70
    • Mcluckey, S.1    Van Berkel, G.J.2    Glish, G.L.3
  • 43
  • 44
    • 0030979415 scopus 로고    scopus 로고
    • Photocross-linking of nucleic acids to associated proteins
    • Meisenheimer K, Koch T. 1997. Photocross-linking of nucleic acids to associated proteins. Crit Rev Biochem Mol Biol 32:101-140.
    • (1997) Crit Rev Biochem Mol Biol , vol.32 , pp. 101-140
    • Meisenheimer, K.1    Koch, T.2
  • 45
    • 0035836063 scopus 로고    scopus 로고
    • Analysis of regulatory phosphorylation sites in ZAP-70 by capillary high-performance liquid chromatography coupled to electrospray ionization or matrix-assisted laser desorption ionization time-of-flight mass spectrometry
    • Miliotis T, Ericsson PO, Marko-Varga G, Svensson R, Nilsson J, Laurell T, Bischoff R. 2001. Analysis of regulatory phosphorylation sites in ZAP-70 by capillary high-performance liquid chromatography coupled to electrospray ionization or matrix-assisted laser desorption ionization time-of-flight mass spectrometry. J Chromatogr B Biomed Sci Appl 752:323-334.
    • (2001) J Chromatogr B Biomed Sci Appl , vol.752 , pp. 323-334
    • Miliotis, T.1    Ericsson, P.O.2    Marko-Varga, G.3    Svensson, R.4    Nilsson, J.5    Laurell, T.6    Bischoff, R.7
  • 46
    • 0032731855 scopus 로고    scopus 로고
    • Localization of O-glycosylation sites in peptides by electron capture dissociation in a Fourier transform mass spectrometer
    • Mirgorodskaya E, Roepstorff P, Zubarev RA. 1999. Localization of O-glycosylation sites in peptides by electron capture dissociation in a Fourier transform mass spectrometer. Anal Chem 71:4431-4436.
    • (1999) Anal Chem , vol.71 , pp. 4431-4436
    • Mirgorodskaya, E.1    Roepstorff, P.2    Zubarev, R.A.3
  • 49
    • 0030036934 scopus 로고    scopus 로고
    • Mechanistic studies of the 5-iodouracil chromophore relevant to its use in nucleo-protein photo-cross-linking
    • Norris C, Meisenheimer P. Koch T. 1996. Mechanistic studies of the 5-iodouracil chromophore relevant to its use in nucleo-protein photo-cross-linking. J Am Chem Soc 118:5796-5803.
    • (1996) J Am Chem Soc , vol.118 , pp. 5796-5803
    • Norris, C.1    Meisenheimer, P.2    Koch, T.3
  • 50
    • 0031080378 scopus 로고    scopus 로고
    • Analysis of chromatin structure by in vivo formaldehyde cross-linking
    • Orlando V, Strutt H, Paro R. 1997. Analysis of chromatin structure by in vivo formaldehyde cross-linking. Methods 11:205-214.
    • (1997) Methods , vol.11 , pp. 205-214
    • Orlando, V.1    Strutt, H.2    Paro, R.3
  • 51
    • 0027240210 scopus 로고
    • Matrix-assisted laser desorption ionization time-of-flight mass spectrometry: A powerful tool for the mass and sequence analysis of natural and modified oligonucleotides
    • Pieles U, Zurcher W, Schar M. Moser HE. 1993. Matrix-assisted laser desorption ionization time-of-flight mass spectrometry: A powerful tool for the mass and sequence analysis of natural and modified oligonucleotides. Nucleic Acids Res 21:3191-3196.
    • (1993) Nucleic Acids Res , vol.21 , pp. 3191-3196
    • Pieles, U.1    Zurcher, W.2    Schar, M.3    Moser, H.E.4
  • 52
    • 0028095520 scopus 로고
    • Negative electrospray ionization mass spectrometry of synthetic and chemically modified oligonucleotides
    • Potier N, Van Dorsselaer A, Cordier Y, Roch O, Bischoff R, 1994. Negative electrospray ionization mass spectrometry of synthetic and chemically modified oligonucleotides. Nucleic Acids Res 22:3895-3903.
    • (1994) Nucleic Acids Res , vol.22 , pp. 3895-3903
    • Potier, N.1    Van Dorsselaer, A.2    Cordier, Y.3    Roch, O.4    Bischoff, R.5
  • 53
    • 0031241394 scopus 로고    scopus 로고
    • Identification and characterization of posttranslational modifications of proteins by MALDI ion trap mass spectrometry
    • Qin J, Chait B. 1997. Identification and characterization of posttranslational modifications of proteins by MALDI ion trap mass spectrometry. Anal Chem 69:4002-4009.
    • (1997) Anal Chem , vol.69 , pp. 4002-4009
    • Qin, J.1    Chait, B.2
  • 54
    • 0035918569 scopus 로고    scopus 로고
    • Peptidic determinants and structural model of human NDP kinase B (Nm23-H2) bound to single-stranded DNA
    • Raveh S, Vinh J, Rossier J, Agou F, Veron M. 2001. Peptidic determinants and structural model of human NDP kinase B (Nm23-H2) bound to single-stranded DNA. Biochemistry 40:5882-5893.
    • (2001) Biochemistry , vol.40 , pp. 5882-5893
    • Raveh, S.1    Vinh, J.2    Rossier, J.3    Agou, F.4    Veron, M.5
  • 55
    • 0034477635 scopus 로고    scopus 로고
    • Characterization of a cross-linked DNA-endonuclease VIII repair complex by electrospray ionization mass spectrometry
    • Rieger R, McTigue M, Kycia J, Gerchman S, Grollman A, Iden C. 2000. Characterization of a cross-linked DNA-endonuclease VIII repair complex by electrospray ionization mass spectrometry. J Am Soc Mass Spectrom 11:505-515.
    • (2000) J Am Soc Mass Spectrom , vol.11 , pp. 505-515
    • Rieger, R.1    McTigue, M.2    Kycia, J.3    Gerchman, S.4    Grollman, A.5    Iden, C.6
  • 56
    • 0031013294 scopus 로고    scopus 로고
    • Mass spectrometry in protein studies from genome to function
    • Roepstorff P. 1997. Mass spectrometry in protein studies from genome to function. Curr Opin Biotechnol 8:6-13.
    • (1997) Curr Opin Biotechnol , vol.8 , pp. 6-13
    • Roepstorff, P.1
  • 57
    • 0029909660 scopus 로고    scopus 로고
    • Identification of the template-binding cleft of T7 RNA polymerase as the site for promoter binding by photochemical cross-linking with psoralen
    • Sastry SS. 1996. Identification of the template-binding cleft of T7 RNA polymerase as the site for promoter binding by photochemical cross-linking with psoralen. Biochemistry 35: 13519-13530.
    • (1996) Biochemistry , vol.35 , pp. 13519-13530
    • Sastry, S.S.1
  • 58
    • 0032482990 scopus 로고    scopus 로고
    • RNA-binding site in T7 RNA polymerase
    • Sastry S. Ross BM. 1998. RNA-binding site in T7 RNA polymerase. Proc Natl Acad Sci USA 95:9111-9116.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 9111-9116
    • Sastry, S.1    Ross, B.M.2
  • 59
    • 0033586750 scopus 로고    scopus 로고
    • Probing the interaction of T7 RNA polymerase with promoter
    • Sastry S, Ross BM. 1999. Probing the interaction of T7 RNA polymerase with promoter. Biochemistry 38:4972-4981.
    • (1999) Biochemistry , vol.38 , pp. 4972-4981
    • Sastry, S.1    Ross, B.M.2
  • 61
    • 0026284055 scopus 로고
    • Protein-DNA interactions
    • Sauer RT, editor; San Diego: Academic Press
    • Sauer RT, editor, 1991. Protein-DNA interactions. Methods in enzymology, Vol. 208. San Diego: Academic Press.
    • (1991) Methods in Enzymology , vol.208
  • 62
    • 0026492796 scopus 로고
    • Photoreactions of thymine and thymidine with N-acetyltyrosine
    • Shaw AA, Falick AM, Shetlar MD. 1992. Photoreactions of thymine and thymidine with N-acetyltyrosine. Biochemistry 31:10976-10983.
    • (1992) Biochemistry , vol.31 , pp. 10976-10983
    • Shaw, A.A.1    Falick, A.M.2    Shetlar, M.D.3
  • 63
    • 0034194446 scopus 로고    scopus 로고
    • MALDI quadrupole time-of-flight mass spectrometry: A powerful tool for proteomic research
    • Shevchenko A, Loboda A, Ens W, Standing KG. 2000. MALDI quadrupole time-of-flight mass spectrometry: A powerful tool for proteomic research. Anal Chem 72:2131-2141.
    • (2000) Anal Chem , vol.72 , pp. 2132-2141
    • Shevchenko, A.1    Loboda, A.2    Ens, W.3    Standing, K.G.4
  • 64
    • 0027533207 scopus 로고
    • Exchangeable GTP binding site of beta-tubulin. Identification of cysteine 12 as the major site of cross-linking by direct photoaffinity labeling
    • Shivanna BD, Mejillano MR, Williams TD, Himes RH. 1993. Exchangeable GTP binding site of beta-tubulin. Identification of cysteine 12 as the major site of cross-linking by direct photoaffinity labeling. J Biol Chem 268: 127-132.
    • (1993) J Biol Chem , vol.268 , pp. 127-132
    • Shivanna, B.D.1    Mejillano, M.R.2    Williams, T.D.3    Himes, R.H.4
  • 65
    • 0012607974 scopus 로고
    • Dose dependent decrease in extractability of DNA from bacteria following irradiation with ultraviolet light or with visible light plus dye
    • Smith KC. 1962. Dose dependent decrease in extractability of DNA from bacteria following irradiation with ultraviolet light or with visible light plus dye. Biochem Biophys Res Commun 8:157-163.
    • (1962) Biochem Biophys Res Commun , vol.8 , pp. 157-163
    • Smith, K.C.1
  • 66
    • 0034812113 scopus 로고    scopus 로고
    • Mass spectrometric analysis of a UV-cross-linked protein-DNA complex: Tryptophans 54 and 88 of E. coli SSB cross-link to DNA
    • Steen H, Petersen J, Mann M, Jensen ON, 2001. Mass spectrometric analysis of a UV-cross-linked protein-DNA complex: Tryptophans 54 and 88 of E. coli SSB cross-link to DNA. Protein Sci 10:1989-2001.
    • (2001) Protein Sci , vol.10 , pp. 1989-2001
    • Steen, H.1    Petersen, J.2    Mann, M.3    Jensen, O.N.4
  • 68
    • 84990675520 scopus 로고
    • Improved electrospray ionization of synthetic oligodeoxynucleotides
    • Stults JT, Marsters JC. 1991. Improved electrospray ionization of synthetic oligodeoxynucleotides. Rapid Commun Mass Spectrom 5:359-363.
    • (1991) Rapid Commun Mass Spectrom , vol.5 , pp. 359-363
    • Stults, J.T.1    Marsters, J.C.2
  • 69
    • 0015874433 scopus 로고
    • Methyl 4-mercaptobutyrimidate as a cleavable cross-linking reagent and its application to the Escherichia coli 30S robosome
    • Traut RR, Bollen A, Sun TT, Hershey JW, Sundberg J, Pierce LR. 1973. Methyl 4-mercaptobutyrimidate as a cleavable cross-linking reagent and its application to the Escherichia coli 30S robosome. Biochemistry 12:3266-3273.
    • (1973) Biochemistry , vol.12 , pp. 3266-3273
    • Traut, R.R.1    Bollen, A.2    Sun, T.T.3    Hershey, J.W.4    Sundberg, J.5    Pierce, L.R.6
  • 70
    • 0029087624 scopus 로고
    • Protein-rRNA binding features and their structural and functional implications in ribosomes as determined by cross-linking studies
    • Urlaub H, Kruft V, Bischof O, Muller EC, Wittmann-Liebold B. 1995. Protein-rRNA binding features and their structural and functional implications in ribosomes as determined by cross-linking studies. EMBO J 14:4578-4588.
    • (1995) EMBO J , vol.14 , pp. 4578-4588
    • Urlaub, H.1    Kruft, V.2    Bischof, O.3    Muller, E.C.4    Wittmann-Liebold, B.5
  • 71
    • 0030940842 scopus 로고    scopus 로고
    • Identification and sequence analysis of contact sites between ribosomal proteins and rRNA in Escherichia coli 30 S subunits by a new approach using matrix-assisted laser desorption/ionization-mass spectrometry combined with N-terminal microsequencing
    • Urlaub H. Thiede B, Muller EC, Brimacombe R, Wittmann-Liebold B. 1997a. Identification and sequence analysis of contact sites between ribosomal proteins and rRNA in Escherichia coli 30 S subunits by a new approach using matrix-assisted laser desorption/ionization-mass spectrometry combined with N-terminal microsequencing. J Biol Chem 272:14547-14555.
    • (1997) J Biol Chem , vol.272 , pp. 14547-14555
    • Urlaub, H.1    Thiede, B.2    Muller, E.C.3    Brimacombe, R.4    Wittmann-Liebold, B.5
  • 72
    • 53249132910 scopus 로고    scopus 로고
    • Contact sites of peptide-oligoribonucleotide cross-links identified by a combination of peptide and nucleotide sequencing with MALDI MS
    • Urlaub H, Thiede B, Muller EC, Wittmann-Liebold B. 1997b. Contact sites of peptide-oligoribonucleotide cross-links identified by a combination of peptide and nucleotide sequencing with MALDI MS. J Protein Chem 16:375-383.
    • (1997) J Protein Chem , vol.16 , pp. 375-383
    • Urlaub, H.1    Thiede, B.2    Muller, E.C.3    Wittmann-Liebold, B.4
  • 73
    • 0035901537 scopus 로고    scopus 로고
    • The structural basis of acyl coenzyme A-dependent regulation of the transcription factor FadR
    • van Aalten DM, DiRusso CC, Knudsen J. 2001. The structural basis of acyl coenzyme A-dependent regulation of the transcription factor FadR. EMBO J 20:2041-2050.
    • (2001) EMBO J , vol.20 , pp. 2041-2050
    • Van Aalten, D.M.1    DiRusso, C.C.2    Knudsen, J.3
  • 74
    • 0034614308 scopus 로고    scopus 로고
    • Fragmentation reactions of all 64 protonated trimer oligodeoxynucleotides and 16 mixed base tetramer oligodeoxynucleotides via tandem mass spectrometry in an ion trap
    • Vrkie AK, O'Hair RAJ, Foote S, Reid GE. 2000 Fragmentation reactions of all 64 protonated trimer oligodeoxynucleotides and 16 mixed base tetramer oligodeoxynucleotides via tandem mass spectrometry in an ion trap. Int J Mass Spectrom 194:145-164.
    • (2000) Int J Mass Spectrom , vol.194 , pp. 145-164
    • Vrkie, A.K.1    O'Hair, R.A.J.2    Foote, S.3    Reid, G.E.4
  • 75
    • 0030968113 scopus 로고    scopus 로고
    • Electrospray collision-induced dissociation mass spectra of positively charged oligonucleotides
    • Wang P, Bartlett MG, Martin LB. 1997. Electrospray collision-induced dissociation mass spectra of positively charged oligonucleotides. Rapid Commun Mass Spectrom 11:846-856.
    • (1997) Rapid Commun Mass Spectrom , vol.11 , pp. 846-856
    • Wang, P.1    Bartlett, M.G.2    Martin, L.B.3
  • 76
    • 0034612273 scopus 로고    scopus 로고
    • Identification of the amino acid residues of the amino terminus of vimentin responsible for DNA binding by enzymatic and chemical sequencing and analysis by MALDI-TOF
    • Wang Q, Shoeman R, Traub P. 2000. Identification of the amino acid residues of the amino terminus of vimentin responsible for DNA binding by enzymatic and chemical sequencing and analysis by MALDI-TOF. Biochemistry 39:6645-6651.
    • (2000) Biochemistry , vol.39 , pp. 6645-6651
    • Wang, Q.1    Shoeman, R.2    Traub, P.3
  • 77
    • 0035106351 scopus 로고    scopus 로고
    • Large-scale analysis of the yeast proteome by multidimensional protein identification technology
    • Washburn MP, Wolters D, Yates JR3rd. 2001. Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat Biotechnol 19:242-247.
    • (2001) Nat Biotechnol , vol.19 , pp. 242-247
    • Washburn, M.P.1    Wolters, D.2    Yates III, J.R.3
  • 78
    • 0026323541 scopus 로고
    • Identification of amino acid residues at interface of protein-nucleic acid complexes by photochemical cross-linking methods in enzymology
    • San Diego, CA: Academic Press
    • Williams K, Konigsberg W. 1991. Identification of amino acid residues at interface of protein-nucleic acid complexes by photochemical cross-linking Methods in Enzymology. San Diego, CA: Academic Press; pp 516-539.
    • (1991) , pp. 516-539
    • Williams, K.1    Konigsberg, W.2
  • 79
    • 0029685702 scopus 로고    scopus 로고
    • Analytical properties of the nano-electrospray ion source
    • Wilm M, Mann M. 1996. Analytical properties of the nano-electrospray ion source. Anal Chem 68:1-8.
    • (1996) Anal Chem , vol.68 , pp. 1-8
    • Wilm, M.1    Mann, M.2
  • 80
    • 0035173651 scopus 로고    scopus 로고
    • Analysis of protein phosphorylation by capillary liquid chromatography coupled to element mass spectrometry with 31P detection and to electrospray mass spectrometry
    • Wind M, Edler M, Jakubowski N, Linscheid M, Wesch H, Lehmann WD. 2001. Analysis of protein phosphorylation by capillary liquid chromatography coupled to element mass spectrometry with 31P detection and to electrospray mass spectrometry. Anal Chem 73:29-35.
    • (2001) Anal Chem , vol.73 , pp. 29-35
    • Wind, M.1    Edler, M.2    Jakubowski, N.3    Linscheid, M.4    Wesch, H.5    Lehmann, W.D.6
  • 81
    • 0032518151 scopus 로고    scopus 로고
    • Electrospray ionization mass spectrometric characterization of photocrosslinked DNA-EcoRI DNA methyltransferase complexes
    • Wong D, Pavlovich J, Reich N. 1998. Electrospray ionization mass spectrometric characterization of photocrosslinked DNA-EcoRI DNA methyltransferase complexes. Nucleic Acids Res 26:645-649.
    • (1998) Nucleic Acids Res , vol.26 , pp. 645-649
    • Wong, D.1    Pavlovich, J.2    Reich, N.3
  • 82
    • 0034687805 scopus 로고    scopus 로고
    • Identification of tyrosine 204 as the photo-cross-linking site in the DNA-EcoRI DNA methyl-transferase complex by electrospray ionization mass spectrometry
    • Wong DL, Reich NO. 2000. Identification of tyrosine 204 as the photo-cross-linking site in the DNA-EcoRI DNA methyl-transferase complex by electrospray ionization mass spectrometry. Biochemistry 39:15410-15417.
    • (2000) Biochemistry , vol.39 , pp. 15410-15417
    • Wong, D.L.1    Reich, N.O.2
  • 83
    • 0021100698 scopus 로고
    • The localization of multiple sites on 16S RNA which are cross-linked to proteins S7 and S8 in Escherichia coli 30S ribosomal subunits by treatment with 2-iminothiolane
    • Wower I, Brimacombe R. 1983. The localization of multiple sites on 16S RNA which are cross-linked to proteins S7 and S8 in Escherichia coli 30S ribosomal subunits by treatment with 2-iminothiolane. Nucleic Acids Res 11:1419-1437.
    • (1983) Nucleic Acids Res , vol.11 , pp. 1419-1437
    • Wower, I.1    Brimacombe, R.2
  • 84
    • 0019792056 scopus 로고
    • The use of 2-iminothiolane as an RNA-protein cross-linking agent in Escherichia coli ribosomes, and the localisation on 23S RNA of sites cross-linked to proteins L4, L6, L21, L23, L27, and L29
    • Wower I, Wower J, Meinke M, Brimacombe R. 1981. The use of 2-iminothiolane as an RNA-protein cross-linking agent in Escherichia coli ribosomes, and the localisation on 23S RNA of sites cross-linked to proteins L4, L6, L21, L23, L27, and L29. Nucleic Acids Res 9:4285-4302.
    • (1981) Nucleic Acids Res , vol.9 , pp. 4285-4302
    • Wower, I.1    Wower, J.2    Meinke, M.3    Brimacombe, R.4
  • 85
    • 0034501099 scopus 로고    scopus 로고
    • Mobile and localized protons: A framework for understanding peptide dissociation
    • Wysocki VH, Tsaprailis G, Smith LL, Breci LA. 2000. Mobile and localized protons: A framework for understanding peptide dissociation. J Mass Spectrom 35: 1399-1406.
    • (2000) J Mass Spectrom , vol.35 , pp. 1399-1406
    • Wysocki, V.H.1    Tsaprailis, G.2    Smith, L.L.3    Breci, L.A.4
  • 86
    • 0344004867 scopus 로고    scopus 로고
    • Electrospray ionization-mass spectrometry study of the interaction of cisplatin-adducted oligonucleotides with human XPA minimal binding domain protein
    • Xu N, Pasa-Tolic L, Smith RD, Ni S, Thrall BD. 1999. Electrospray ionization-mass spectrometry study of the interaction of cisplatin-adducted oligonucleotides with human XPA minimal binding domain protein. Anal Biochem 272:26-33.
    • (1999) Anal Biochem , vol.272 , pp. 26-33
    • Xu, N.1    Pasa-Tolic, L.2    Smith, R.D.3    Ni, S.4    Thrall, B.D.5
  • 87
    • 0000944563 scopus 로고    scopus 로고
    • Electron capture dissociation of multiply charged protein cations. A nonergodic process
    • Zubarev RA, Kelleher NL, McLafferty FW. 1998. Electron capture dissociation of multiply charged protein cations. A nonergodic process. J Am Chem Soc 120:3265-3266.
    • (1998) J Am Chem Soc , vol.120 , pp. 3265-3266
    • Zubarev, R.A.1    Kelleher, N.L.2    McLafferty, F.W.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.