-
1
-
-
0028811974
-
Viral dynamics in human immunodeficiency virus type 1 infection
-
Wei X, Ghosh SK, Taylor ME, Johnson VA, Emini EA, et al. (1995) Viral dynamics in human immunodeficiency virus type 1 infection. Nature 373: 117-122.
-
(1995)
Nature
, vol.373
, pp. 117-122
-
-
Wei, X.1
Ghosh, S.K.2
Taylor, M.E.3
Johnson, V.A.4
Emini, E.A.5
-
2
-
-
0028874048
-
Rapid turnover of plasma virions and CD4 lymphocytes in HIV-1 infection
-
Ho DD, Neumann AU, Perelson AS, Chen W, Leonard JM, et al. (1995) Rapid turnover of plasma virions and CD4 lymphocytes in HIV-1 infection. Nature 373: 123-126.
-
(1995)
Nature
, vol.373
, pp. 123-126
-
-
Ho, D.D.1
Neumann, A.U.2
Perelson, A.S.3
Chen, W.4
Leonard, J.M.5
-
3
-
-
0028804588
-
Modeling defective interfering virus therapy for AIDS: conditions for HIV survival
-
Nelson GW, Perelson AS, (1995) Modeling defective interfering virus therapy for AIDS: conditions for HIV survival. Math Biosci 125: 127-153.
-
(1995)
Math Biosci
, vol.125
, pp. 127-153
-
-
Nelson, G.W.1
Perelson, A.S.2
-
4
-
-
0029967721
-
HIV-1 dynamics in vivo: virion clearance rate, infected cell life-span, and viral generation time
-
Perelson AS, Neumann AU, Markowitz M, Leonard JM, Ho DD, (1996) HIV-1 dynamics in vivo: virion clearance rate, infected cell life-span, and viral generation time. Science 271: 1582-1586.
-
(1996)
Science
, vol.271
, pp. 1582-1586
-
-
Perelson, A.S.1
Neumann, A.U.2
Markowitz, M.3
Leonard, J.M.4
Ho, D.D.5
-
5
-
-
33750690698
-
Model selection and mixed-effects modeling of HIV infection dynamics
-
Bortz DM, Nelson PW, (2006) Model selection and mixed-effects modeling of HIV infection dynamics. Bull Math Biol 68: 2005-2025.
-
(2006)
Bull Math Biol
, vol.68
, pp. 2005-2025
-
-
Bortz, D.M.1
Nelson, P.W.2
-
6
-
-
0035875860
-
HIV dynamics and t-cell immunity after three structured treatment interruptions in chronic HIV-1 infection
-
Ruiz L, Carcelain G, Martnez-Picado J, Frost S, Marfil S, et al. (2001) HIV dynamics and t-cell immunity after three structured treatment interruptions in chronic HIV-1 infection. AIDS 15: F19-F27.
-
(2001)
AIDS
, vol.15
-
-
Ruiz, L.1
Carcelain, G.2
Martnez-Picado, J.3
Frost, S.4
Marfil, S.5
-
7
-
-
0034615789
-
Modeling plasma virus concentration during primary HIV infection
-
Stafford MA, Corey L, Cao Y, Daar ES, Ho DD, et al. (2000) Modeling plasma virus concentration during primary HIV infection. J Theor Biol 203: 285-301.
-
(2000)
J Theor Biol
, vol.203
, pp. 285-301
-
-
Stafford, M.A.1
Corey, L.2
Cao, Y.3
Daar, E.S.4
Ho, D.D.5
-
8
-
-
0037292271
-
Identifiability of nonlinear systems with application to HIV/AIDS models
-
Xia X, Moog CH, (2003) Identifiability of nonlinear systems with application to HIV/AIDS models. IEEE T Automat Contr 48: 330-336.
-
(2003)
IEEE T Automat Contr
, vol.48
, pp. 330-336
-
-
Xia, X.1
Moog, C.H.2
-
9
-
-
41049103588
-
Parameter identifiability and estimation of HIV/AIDS dynamic models
-
Wu H, Zhu H, Miao H, Perelson AS, (2008) Parameter identifiability and estimation of HIV/AIDS dynamic models. Bull Math Biol 70: 785-799.
-
(2008)
Bull Math Biol
, vol.70
, pp. 785-799
-
-
Wu, H.1
Zhu, H.2
Miao, H.3
Perelson, A.S.4
-
10
-
-
62749173565
-
Differential equation modeling of HIV viral fitness experiments: model identification, model selection, and multimodel inference
-
Miao H, Dykes C, Demeter LM, Wu H, (2009) Differential equation modeling of HIV viral fitness experiments: model identification, model selection, and multimodel inference. Biometrics 65: 292-300.
-
(2009)
Biometrics
, vol.65
, pp. 292-300
-
-
Miao, H.1
Dykes, C.2
Demeter, L.M.3
Wu, H.4
-
11
-
-
84870259530
-
Estimation of constant and time-varying dynamic parameters of HIV infection in a nonlinear differential equation model
-
Liang H, Miao H, Wu H, (2010) Estimation of constant and time-varying dynamic parameters of HIV infection in a nonlinear differential equation model. Ann Appl Stat 4: 460-483.
-
(2010)
Ann Appl Stat
, vol.4
, pp. 460-483
-
-
Liang, H.1
Miao, H.2
Wu, H.3
-
12
-
-
21544447528
-
Modeling long-term HIV dynamics and antiretroviral response: effects of drug potency, pharmacokinetics, adherence, and drug resistance
-
Wu H, Huang Y, Acosta EP, Rosenkranz SL, Kuritzkes DR, et al. (2005) Modeling long-term HIV dynamics and antiretroviral response: effects of drug potency, pharmacokinetics, adherence, and drug resistance. J Acquir Immune Defic Syndr 39: 272-283.
-
(2005)
J Acquir Immune Defic Syndr
, vol.39
, pp. 272-283
-
-
Wu, H.1
Huang, Y.2
Acosta, E.P.3
Rosenkranz, S.L.4
Kuritzkes, D.R.5
-
13
-
-
33745245700
-
Hierarchical bayesian methods for estimation of parameters in a longitudinal HIV dynamic system
-
Huang Y, Liu D, Wu H, (2006) Hierarchical bayesian methods for estimation of parameters in a longitudinal HIV dynamic system. Biometrics 62: 413-423.
-
(2006)
Biometrics
, vol.62
, pp. 413-423
-
-
Huang, Y.1
Liu, D.2
Wu, H.3
-
14
-
-
40449119394
-
Long-term HIV dynamic models incorporating drug adherence and resistance to treatment for prediction of virological responses
-
Huang Y, (2008) Long-term HIV dynamic models incorporating drug adherence and resistance to treatment for prediction of virological responses. Computational Statistics & Data Analysis 52: 3765-3778.
-
(2008)
Computational Statistics & Data Analysis
, vol.52
, pp. 3765-3778
-
-
Huang, Y.1
-
15
-
-
77956289669
-
Hierarchical bayesian inference for HIV dynamic differential equation models incorporating multiple treatment factors
-
Huang Y, Wu H, Acosta EP, (2010) Hierarchical bayesian inference for HIV dynamic differential equation models incorporating multiple treatment factors. Biom J 52: 470-486.
-
(2010)
Biom J
, vol.52
, pp. 470-486
-
-
Huang, Y.1
Wu, H.2
Acosta, E.P.3
-
16
-
-
0037102904
-
A Bayesian approach to parameter estimation in HIV dynamical models
-
Putter H, Heisterkamp SH, Lange JMA, de Wolf F, (2002) A Bayesian approach to parameter estimation in HIV dynamical models. Stat Med 21: 2199-2214.
-
(2002)
Stat Med
, vol.21
, pp. 2199-2214
-
-
Putter, H.1
Heisterkamp, S.H.2
Lange, J.M.A.3
de Wolf, F.4
-
17
-
-
0037385686
-
A novel antiviral intervention results in more accurate assessment of human immunodeficiency virus type 1 replication dynamics and T-cell decay in vivo
-
Markowitz M, Louie M, Hurley A, Sun E, Di Mascio M, et al. (2003) A novel antiviral intervention results in more accurate assessment of human immunodeficiency virus type 1 replication dynamics and T-cell decay in vivo. J Virol 77: 5037-5038.
-
(2003)
J Virol
, vol.77
, pp. 5037-5038
-
-
Markowitz, M.1
Louie, M.2
Hurley, A.3
Sun, E.4
Di Mascio, M.5
-
18
-
-
0027457101
-
Dynamics of HIV infection of CD4+ T cells
-
Perelson A, (1993) Dynamics of HIV infection of CD4+ T cells. Mathematical Biosciences 114: 81-125.
-
(1993)
Mathematical Biosciences
, vol.114
, pp. 81-125
-
-
Perelson, A.1
-
19
-
-
0030952479
-
Decay characteristics of HIV-1-infected compartments during combination therapy
-
Perelson AS, Essunger P, Cao Y, Vesanen M, Hurley A, et al. (1997) Decay characteristics of HIV-1-infected compartments during combination therapy. Nature 387: 188-191.
-
(1997)
Nature
, vol.387
, pp. 188-191
-
-
Perelson, A.S.1
Essunger, P.2
Cao, Y.3
Vesanen, M.4
Hurley, A.5
-
20
-
-
0030869269
-
Treatment with indinavir, zidovudine, and lamivudine in adults with human immunodeficiency virus infection and prior antiretroviral therapy
-
Gulick RM, Mellors JW, Havlir D, Eron JJ, Gonzalez C, et al. (1997) Treatment with indinavir, zidovudine, and lamivudine in adults with human immunodeficiency virus infection and prior antiretroviral therapy. N Engl J Med 337: 734-739.
-
(1997)
N Engl J Med
, vol.337
, pp. 734-739
-
-
Gulick, R.M.1
Mellors, J.W.2
Havlir, D.3
Eron, J.J.4
Gonzalez, C.5
-
21
-
-
0033520673
-
Residual HIV-1 RNA in blood plasma of patients taking suppressive highly active antiretroviral therapy
-
Dornadula G, Zhang H, VanUitert B, Stern J, Livornese L, et al. (1999) Residual HIV-1 RNA in blood plasma of patients taking suppressive highly active antiretroviral therapy. JAMA 282: 1627-1632.
-
(1999)
JAMA
, vol.282
, pp. 1627-1632
-
-
Dornadula, G.1
Zhang, H.2
VanUitert, B.3
Stern, J.4
Livornese, L.5
-
22
-
-
10744228049
-
New real-time reverse transcriptase-initiated PCR assay with single-copy sensitivity for human immunodeficiency virus type 1 RNA in plasma
-
Palmer S, Wiegand AP, Maldarelli F, Bazmi H, Mican JM, et al. (2003) New real-time reverse transcriptase-initiated PCR assay with single-copy sensitivity for human immunodeficiency virus type 1 RNA in plasma. J Clin Microbiol 41: 4531-4536.
-
(2003)
J Clin Microbiol
, vol.41
, pp. 4531-4536
-
-
Palmer, S.1
Wiegand, A.P.2
Maldarelli, F.3
Bazmi, H.4
Mican, J.M.5
-
23
-
-
14444273439
-
Identification of a reservoir for HIV-1 in patients on highly active antiretroviral therapy
-
Finzi D, Hermankova M, Pierson T, Carruth LM, Buck C, et al. (1997) Identification of a reservoir for HIV-1 in patients on highly active antiretroviral therapy. Science 278: 1295-1300.
-
(1997)
Science
, vol.278
, pp. 1295-1300
-
-
Finzi, D.1
Hermankova, M.2
Pierson, T.3
Carruth, L.M.4
Buck, C.5
-
24
-
-
0030659177
-
Presence of an inducible HIV-1 latent reservoir during highly active antiretroviral therapy
-
Chun TW, Stuyver L, Mizell SB, Ehler LA, Mican JA, et al. (1997) Presence of an inducible HIV-1 latent reservoir during highly active antiretroviral therapy. Proc Natl Acad Sci U S A 94: 13193-13197.
-
(1997)
Proc Natl Acad Sci U S A
, vol.94
, pp. 13193-13197
-
-
Chun, T.W.1
Stuyver, L.2
Mizell, S.B.3
Ehler, L.A.4
Mican, J.A.5
-
25
-
-
70449685916
-
A generalized multi-strain model of HIV evolution with implications for drug-resistance management
-
doi:10.1109/ACC.2009.5160358
-
Luo R, Piovoso M, Zurakowski R, (2009) A generalized multi-strain model of HIV evolution with implications for drug-resistance management. In: Proc. American Control Conference. pp. 2295-2300 doi:10.1109/ACC.2009.5160358.
-
(2009)
Proc. American Control Conference
, pp. 2295-2300
-
-
Luo, R.1
Piovoso, M.2
Zurakowski, R.3
-
26
-
-
73449117263
-
Modeling latently infected cell activation: viral and latent reservoir persistence, and viral blips in HIV-infected patients on potent therapy
-
Rong L, Perelson AS, (2009) Modeling latently infected cell activation: viral and latent reservoir persistence, and viral blips in HIV-infected patients on potent therapy. PLoS Comput Biol 5: e1000533.
-
(2009)
PLoS Comput Biol
, vol.5
-
-
Rong, L.1
Perelson, A.S.2
-
27
-
-
68949196315
-
Modeling HIV persistence, the latent reservoir, and viral blips
-
Rong L, Perelson AS, (2009) Modeling HIV persistence, the latent reservoir, and viral blips. Journal of Theoretical Biology 260: 308-331.
-
(2009)
Journal of Theoretical Biology
, vol.260
, pp. 308-331
-
-
Rong, L.1
Perelson, A.S.2
-
28
-
-
34447648181
-
Long-term persistence of transmitted HIV drug resistance in male genital tract secretions: implications for secondary transmission
-
Smith DM, Wong JK, Shao H, Hightower GK, Mai SHT, et al. (2007) Long-term persistence of transmitted HIV drug resistance in male genital tract secretions: implications for secondary transmission. J Infect Dis 196: 356-360.
-
(2007)
J Infect Dis
, vol.196
, pp. 356-360
-
-
Smith, D.M.1
Wong, J.K.2
Shao, H.3
Hightower, G.K.4
Mai, S.H.T.5
-
29
-
-
0035341524
-
Residual human immunodeficiency virus (HIV) type 1 RNA and DNA in lymph nodes and HIV RNA in genital secretions and in cerebrospinal uid after suppression of viremia for 2 years
-
Gunthard HF, Havlir DV, Fiscus S, Zhang ZQ, Eron J, et al. (2001) Residual human immunodeficiency virus (HIV) type 1 RNA and DNA in lymph nodes and HIV RNA in genital secretions and in cerebrospinal uid after suppression of viremia for 2 years. J Infect Dis 183: 1318-1327.
-
(2001)
J Infect Dis
, vol.183
, pp. 1318-1327
-
-
Gunthard, H.F.1
Havlir, D.V.2
Fiscus, S.3
Zhang, Z.Q.4
Eron, J.5
-
30
-
-
41649083599
-
Low-level viremia persists for at least 7 years in patients on suppressive antiretroviral therapy
-
Palmer S, Maldarelli F, Wiegand A, Bernstein B, Hanna GJ, et al. (2008) Low-level viremia persists for at least 7 years in patients on suppressive antiretroviral therapy. Proc Natl Acad Sci U S A 105: 3879-3884.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 3879-3884
-
-
Palmer, S.1
Maldarelli, F.2
Wiegand, A.3
Bernstein, B.4
Hanna, G.J.5
-
31
-
-
0036176509
-
The challenge of viral reservoirs in HIV-1 infection
-
Blankson JN, Persaud D, Siliciano RF, (2002) The challenge of viral reservoirs in HIV-1 infection. Annu Rev Med 53: 557-593.
-
(2002)
Annu Rev Med
, vol.53
, pp. 557-593
-
-
Blankson, J.N.1
Persaud, D.2
Siliciano, R.F.3
-
32
-
-
0032122490
-
Cellular and anatomical reservoirs of HIV-1 in patients receiving potent antiretroviral combination therapy
-
Schrager LK, D'Souza MP, (1998) Cellular and anatomical reservoirs of HIV-1 in patients receiving potent antiretroviral combination therapy. JAMA 280: 67-71.
-
(1998)
JAMA
, vol.280
, pp. 67-71
-
-
Schrager, L.K.1
D'Souza, M.P.2
-
33
-
-
0030913366
-
Quantification of latent tissue reservoirs and total body viral load in HIV-1 infection
-
Chun TW, Carruth L, Finzi D, Shen X, DiGiuseppe JA, et al. (1997) Quantification of latent tissue reservoirs and total body viral load in HIV-1 infection. Nature 387: 183-188.
-
(1997)
Nature
, vol.387
, pp. 183-188
-
-
Chun, T.W.1
Carruth, L.2
Finzi, D.3
Shen, X.4
DiGiuseppe, J.A.5
-
34
-
-
0028792184
-
In vivo fate of HIV-1-infected T cells: quantitative analysis of the transition to stable latency
-
Chun TW, Finzi D, Margolick J, Chadwick K, Schwartz D, et al. (1995) In vivo fate of HIV-1-infected T cells: quantitative analysis of the transition to stable latency. Nat Med 1: 1284-1290.
-
(1995)
Nat Med
, vol.1
, pp. 1284-1290
-
-
Chun, T.W.1
Finzi, D.2
Margolick, J.3
Chadwick, K.4
Schwartz, D.5
-
35
-
-
0038579210
-
Long-term follow-up studies confirm the stability of the latent reservoir for HIV-1 in resting CD4+ T cells
-
Siliciano JD, Kajdas J, Finzi D, Quinn TC, Chadwick K, et al. (2003) Long-term follow-up studies confirm the stability of the latent reservoir for HIV-1 in resting CD4+ T cells. Nat Med 9: 727-728.
-
(2003)
Nat Med
, vol.9
, pp. 727-728
-
-
Siliciano, J.D.1
Kajdas, J.2
Finzi, D.3
Quinn, T.C.4
Chadwick, K.5
-
36
-
-
0028375708
-
On global identifiability for arbitrary model parameterizations
-
Ljung L, Glad S, (1994) On global identifiability for arbitrary model parameterizations. Automatica 30: 265-76.
-
(1994)
Automatica
, vol.30
, pp. 265-276
-
-
Ljung, L.1
Glad, S.2
-
37
-
-
0037399670
-
Parameter identifiability of nonlinear systems: the role of initial conditions
-
Saccomani MP, Audoly S, D'Angio L, (2003) Parameter identifiability of nonlinear systems: the role of initial conditions. Automatica 39: 619-632.
-
(2003)
Automatica
, vol.39
, pp. 619-632
-
-
Saccomani, M.P.1
Audoly, S.2
D'Angio, L.3
-
38
-
-
77950865238
-
Examples of testing global identifiability of biological and biomedical models with the daisy software
-
Saccomani MP, Audoly S, Bellu G, D'Angio L, (2010) Examples of testing global identifiability of biological and biomedical models with the daisy software. Computers in Biology and Medicine 40: 402-407.
-
(2010)
Computers in Biology and Medicine
, vol.40
, pp. 402-407
-
-
Saccomani, M.P.1
Audoly, S.2
Bellu, G.3
D'Angio, L.4
-
39
-
-
0004119251
-
-
Providence, R.I.: American Mathematical Society
-
Ritt JF, (1950) Differential algebra. Providence, R.I.: American Mathematical Society.
-
(1950)
Differential algebra
-
-
Ritt, J.F.1
-
40
-
-
0033589745
-
Rapid production and clearance of HIV-1 and hepatitis C virus assessed by large volume plasma apheresis
-
Ramratnam B, Bonhoeffer S, Binley J, Hurley A, Zhang L, et al. (1999) Rapid production and clearance of HIV-1 and hepatitis C virus assessed by large volume plasma apheresis. The Lancet 354: 1782-1785.
-
(1999)
The Lancet
, vol.354
, pp. 1782-1785
-
-
Ramratnam, B.1
Bonhoeffer, S.2
Binley, J.3
Hurley, A.4
Zhang, L.5
-
41
-
-
52449128028
-
A new strategy to decrease risk of resistance emerging during therapy switching in HIV treatment
-
doi:10.1109/ACC.2008.4586804
-
Luo R, Zurakowski R, (2008) A new strategy to decrease risk of resistance emerging during therapy switching in HIV treatment. In: Proc. American Control Conference. pp. 2112-2117 doi:10.1109/ACC.2008.4586804.
-
(2008)
Proc. American Control Conference
, pp. 2112-2117
-
-
Luo, R.1
Zurakowski, R.2
-
42
-
-
79952575198
-
Controlling the evolution of resistance
-
Luo R, Cannon L, Hernandez J, Piovoso M, Zurakowski R, (2011) Controlling the evolution of resistance. J Process Control 21: 367-378.
-
(2011)
J Process Control
, vol.21
, pp. 367-378
-
-
Luo, R.1
Cannon, L.2
Hernandez, J.3
Piovoso, M.4
Zurakowski, R.5
-
44
-
-
37249076594
-
Antiretroviral therapy: optimal sequencing of therapy to avoid resistance
-
Martinez-Cajas JL, Wainberg MA, (2008) Antiretroviral therapy: optimal sequencing of therapy to avoid resistance. Drugs 68: 43-72.
-
(2008)
Drugs
, vol.68
, pp. 43-72
-
-
Martinez-Cajas, J.L.1
Wainberg, M.A.2
-
45
-
-
84864016280
-
Robust Closed-Loop Minimal Sampling Method for HIV Therapy Switching Strategies
-
doi:10.1109/TBME.2012.2201479, In Press
-
Cardozo EF, Zurakowski R, (2012) Robust Closed-Loop Minimal Sampling Method for HIV Therapy Switching Strategies. Biomedical Engineering, IEEE Transactions on 59: In press doi:10.1109/TBME.2012.2201479.
-
(2012)
Biomedical Engineering, IEEE Transactions on
, vol.59
-
-
Cardozo, E.F.1
Zurakowski, R.2
-
47
-
-
79957594136
-
Discrete-time control for switched positive systems with application to mitigating viral escape
-
Hernandez-Vargas E, Colaneri P, Middleton R, Blanchini F, (2011) Discrete-time control for switched positive systems with application to mitigating viral escape. International Journal of Robust and Nonlinear Control 21: 1093-111.
-
(2011)
International Journal of Robust and Nonlinear Control
, vol.21
, pp. 1093-1111
-
-
Hernandez-Vargas, E.1
Colaneri, P.2
Middleton, R.3
Blanchini, F.4
|