-
1
-
-
21244442555
-
Identification and measurement of neighbor dependent nucleotide substitution process
-
accepted for publication in Bioinformatics (2005).
-
Arndt PF (2004) Identification and measurement of neighbor dependent nucleotide substitution process. Lecture Notes in Informatics P-53 (2004) 227-234; accepted for publication in Bioinformatics (2005).
-
(2004)
Lecture Notes in Informatics P-53 (2004)
, pp. 227-234
-
-
Arndt, P.F.1
-
2
-
-
0242659321
-
DNA sequence evolution with neighbor-dependent mutation
-
PF Arndt CB Burge T Hwa 2003a DNA sequence evolution with neighbor-dependent mutation J Comput Biol 10 313 322
-
(2003)
J Comput Biol
, vol.10
, pp. 313-322
-
-
Arndt, P.F.1
Burge, C.B.2
Hwa, T.3
-
3
-
-
0242666279
-
Distinct changes of genomic biases in nucleotide substitution at the time of mammalian radiation
-
PF Arndt DA Petrov T Hwa 2003b Distinct changes of genomic biases in nucleotide substitution at the time of mammalian radiation Mol Biol Evol 26 1887 1896
-
(2003)
Mol Biol Evol
, vol.26
, pp. 1887-1896
-
-
Arndt, P.F.1
Petrov, D.A.2
Hwa, T.3
-
4
-
-
0033991967
-
Isochores and the evolutionary genomics of vertebrates
-
G Bernardi 2000 Isochores and the evolutionary genomics of vertebrates Gene 241 3 17
-
(2000)
Gene
, vol.241
, pp. 3-17
-
-
Bernardi, G.1
-
5
-
-
0002693749
-
A comparison of several current optimization methods and use of transformations in constrained problems
-
MJ Box 1966 A comparison of several current optimization methods and use of transformations in constrained problems Compute J 9 67 77
-
(1966)
Compute J
, vol.9
, pp. 67-77
-
-
Box, M.J.1
-
7
-
-
0015091567
-
Automatic karyotyping of quinacrine mustard stained human chromosomes
-
T Caspersson KR Castleman G Lomakka EJ Modest A Moller R Nathan RJ Wall L Zech 1971 Automatic karyotyping of quinacrine mustard stained human chromosomes Exp Cell Res 67 233 235
-
(1971)
Exp Cell Res
, vol.67
, pp. 233-235
-
-
Caspersson, T.1
Castleman, K.R.2
Lomakka, G.3
Modest, E.J.4
Moller, A.5
Nathan, R.6
Wall, R.J.7
Zech, L.8
-
8
-
-
0035865257
-
Integration of cytogenetic landmarks into the draft sequence of the human genome
-
VG Cheung N Nowak W Jang 2001 Integration of cytogenetic landmarks into the draft sequence of the human genome Nature 409 953 988
-
(2001)
Nature
, vol.409
, pp. 953-988
-
-
Cheung, V.G.1
Nowak, N.2
Jang, W.3
-
9
-
-
0018185292
-
Molecular basis of base substitution hotspots in Escherichia coli
-
C Coulondre JH Miller PJ Farabaugh W Gilbert 1978 Molecular basis of base substitution hotspots in Escherichia coli Nature 274 775 780
-
(1978)
Nature
, vol.274
, pp. 775-780
-
-
Coulondre, C.1
Miller, J.H.2
Farabaugh, P.J.3
Gilbert, W.4
-
10
-
-
0033736206
-
The covariation between TpA deficiency, CpG deficiency, and G+C content of human isochores is due to a mathematical artifact
-
L Duret N Galtier 2000 The covariation between TpA deficiency, CpG deficiency, and G+C content of human isochores is due to a mathematical artifact Mol Biol Evol 17 1620 1625
-
(2000)
Mol Biol Evol
, vol.17
, pp. 1620-1625
-
-
Duret, L.1
Galtier, N.2
-
14
-
-
0015895045
-
An analysis of the bovine genome by Cs2SO4-Ag density gradient centrifugation
-
J Filipski JP Thiery G Bernard 1973 An analysis of the bovine genome by Cs2SO4-Ag density gradient centrifugation J Mol Biol 80 177 197
-
(1973)
J Mol Biol
, vol.80
, pp. 177-197
-
-
Filipski, J.1
Thiery, J.P.2
Bernard, G.3
-
15
-
-
0033858879
-
Cytosine deamination plays a primary role in the evolution of mammalian isochores
-
KJ Fryxell E Zuckerkandl 2000 Cytosine deamination plays a primary role in the evolution of mammalian isochores Mol Biol Evol 17 1371 1383
-
(2000)
Mol Biol Evol
, vol.17
, pp. 1371-1383
-
-
Fryxell, K.J.1
Zuckerkandl, E.2
-
16
-
-
0038364021
-
Integration of the cytogenetic map with the draft human genome sequence
-
TS Furey D Haussler 2003 Integration of the cytogenetic map with the draft human genome sequence Hum Mol Genet 12 1037 1044
-
(2003)
Hum Mol Genet
, vol.12
, pp. 1037-1044
-
-
Furey, T.S.1
Haussler, D.2
-
17
-
-
18544404720
-
Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution
-
RC Hardison KM Roskin S Yang 2003 Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution Genome Res 13 13 26
-
(2003)
Genome Res
, vol.13
, pp. 13-26
-
-
Hardison, R.C.1
Roskin, K.M.2
Yang, S.3
-
18
-
-
0028294455
-
Wide variations in neighbor-dependent substitution rates
-
ST Hess JD Blake RD Blake 1994 Wide variations in neighbor-dependent substitution rates J Mol Biol 236 1022 1033
-
(1994)
J Mol Biol
, vol.236
, pp. 1022-1033
-
-
Hess, S.T.1
Blake, J.D.2
Blake, R.D.3
-
20
-
-
0034284437
-
Repbase update: A database and an electronic journal of repetitive elements
-
J Jurka 2000 Repbase update: a database and an electronic journal of repetitive elements Trends Genet 16 418 420
-
(2000)
Trends Genet
, vol.16
, pp. 418-420
-
-
Jurka, J.1
-
21
-
-
0342298816
-
A fundamental division in the Alu family of repeated sequences
-
J Jurka T Smith 1988 A fundamental division in the Alu family of repeated sequences Proc Natl Acad Sci USA 85 4775 4778
-
(1988)
Proc Natl Acad Sci USA
, vol.85
, pp. 4775-4778
-
-
Jurka, J.1
Smith, T.2
-
22
-
-
0030045979
-
The age of Alu subfamilies
-
V Kapitonov J Jurka 1996 The age of Alu subfamilies J Mol Evol 42 59 65
-
(1996)
J Mol Evol
, vol.42
, pp. 59-65
-
-
Kapitonov, V.1
Jurka, J.2
-
23
-
-
18544381909
-
A high-resolution recombination map of the human genome
-
A Kong DF Gudbjartsson J Sainz 2002 A high-resolution recombination map of the human genome Nature Genet 31 241 247
-
(2002)
Nature Genet
, vol.31
, pp. 241-247
-
-
Kong, A.1
Gudbjartsson, D.F.2
Sainz, J.3
-
24
-
-
84970501212
-
Comparing partial order correlations from contingency table data
-
HM Kritzer 1980 comparing partial order correlations from contingency table data Sociol Methods Res 8 420 433
-
(1980)
Sociol Methods Res
, vol.8
, pp. 420-433
-
-
Kritzer, H.M.1
-
26
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
ES Lander LM Linton B Birren 2001 Initial sequencing and analysis of the human genome Nature 409 860 921
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
-
28
-
-
3042616134
-
Genomic regionally in rate of evolution is not explained by clustering of genes of comparable expression profile
-
MJ Lercher JV Chamary LD Hurst 2004 Genomic regionally in rate of evolution is not explained by clustering of genes of comparable expression profile Genome Res 14 1002 1013
-
(2004)
Genome Res
, vol.14
, pp. 1002-1013
-
-
Lercher, M.J.1
Chamary, J.V.2
Hurst, L.D.3
-
29
-
-
2442651458
-
Recombination drives the evolution of GC-content in the human genome
-
J Meunier L Duret 2004 Recombination drives the evolution of GC-content in the human genome Mol Biol Evol 21 984 990
-
(2004)
Mol Biol Evol
, vol.21
, pp. 984-990
-
-
Meunier, J.1
Duret, L.2
-
32
-
-
0346389569
-
Genes and transposons are differentially methylated in plants, but not in mammals
-
PD Rabinowicz LE Palmer BP May MT Hemann SW Lowe WR McCombie RA Martienssen 2003 Genes and transposons are differentially methylated in plants, but not in mammals Genome Res 13 2658 2664
-
(2003)
Genome Res
, vol.13
, pp. 2658-2664
-
-
Rabinowicz, P.D.1
Palmer, L.E.2
May, B.P.3
Hemann, M.T.4
Lowe, S.W.5
McCombie, W.R.6
Martienssen, R.A.7
-
33
-
-
0019318994
-
DNA methylation and gene function
-
A Razin AD Riggs 1980 DNA methylation and gene function Science 210 604 610
-
(1980)
Science
, vol.210
, pp. 604-610
-
-
Razin, A.1
Riggs, A.D.2
-
35
-
-
0036737595
-
Deterministic mutation rate variation in the human genome
-
NG Smith MT Webster H Ellegren 2002 Deterministic mutation rate variation in the human genome Genome Res 12 1350 1356
-
(2002)
Genome Res
, vol.12
, pp. 1350-1356
-
-
Smith, N.G.1
Webster, M.T.2
Ellegren, H.3
-
36
-
-
0038781903
-
Neutral substitutions occur at a faster rate in exons than in noncoding DNA in primate genomes
-
S Subramanian S Kumar 2003 Neutral substitutions occur at a faster rate in exons than in noncoding DNA in primate genomes Genome Res 13 838 844
-
(2003)
Genome Res
, vol.13
, pp. 838-844
-
-
Subramanian, S.1
Kumar, S.2
-
37
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
RH Waterston K Lindblad-Toh E Birney 2002 Initial sequencing and comparative analysis of the mouse genome Nature 420 520 562
-
(2002)
Nature
, vol.420
, pp. 520-562
-
-
Waterston, R.H.1
Lindblad-Toh, K.2
Birney, E.3
-
38
-
-
0030840954
-
Cytosine methylation and the ecology of intragenomic parasites
-
JA Yoder CP Walsh TH Bestor 1997 Cytosine methylation and the ecology of intragenomic parasites Trends Genet 13 335 340
-
(1997)
Trends Genet
, vol.13
, pp. 335-340
-
-
Yoder, J.A.1
Walsh, C.P.2
Bestor, T.H.3
|