메뉴 건너뛰기




Volumn 63, Issue 11, 2011, Pages 743-751

Evolutionary genetics of MHC class II beta genes in the brown hare, Lepus europaeus

Author keywords

DPB; DQB; DRB; Lepus Europaeus; MHC; Selection

Indexed keywords

HLA ANTIGEN CLASS 2; HLA DPB ANTIGEN; HLA DQA ANTIGEN; HLA DQB ANTIGEN; HLA DRB ANTIGEN; UNCLASSIFIED DRUG;

EID: 84863759769     PISSN: 00937711     EISSN: 14321211     Source Type: Journal    
DOI: 10.1007/s00251-011-0539-3     Document Type: Article
Times cited : (16)

References (47)
  • 1
    • 33745988232 scopus 로고    scopus 로고
    • Is MHC enough for understanding wildlife immunogenetics?
    • DOI 10.1016/j.tree.2006.05.010, PII S0169534706001637
    • Acevedo-Whitehouse K, Cunningham AA (2006) Is MHC enough for understanding wildlife immunogenetics? Trends Ecol Evol 21:433-438 (Pubitemid 44066618)
    • (2006) Trends in Ecology and Evolution , vol.21 , Issue.8 , pp. 433-438
    • Acevedo-Whitehouse, K.1    Cunningham, A.A.2
  • 3
    • 44249122817 scopus 로고    scopus 로고
    • Extensive polymorphism and geographical variation at a positively selected MHC class II B gene of the lesser kestrel (Falco naumanni)
    • DOI 10.1111/j.1365-294X.2008.03791.x
    • Alcaide M, Edwards SV, Negro JJ, Serrano D, Tella JL (2008) Extensive polymorphism and geographical variation at a positively selected MHC class II B gene of the lesser kestrel (Falco naumanni). Mol Ecol 17:2652-2665 (Pubitemid 351724950)
    • (2008) Molecular Ecology , vol.17 , Issue.11 , pp. 2652-2665
    • Alcaide, M.1    Edwards, S.V.2    Negro, J.J.3    Serrano, D.4    Tella, J.L.5
  • 4
    • 57249094355 scopus 로고    scopus 로고
    • Positive selection on Mammalian MHC-DQ genes revisited from a multispecies perspective
    • Amills M, Ramirez O, Tomas A, Obexer-Ruff G, Vidal O (2008) Positive selection on mammalian MHC-DQ genes revisited from a multispecies perspective. Genes Immunol 9:651
    • (2008) Genes Immunol , vol.9 , pp. 651
    • Amills, M.1    Ramirez, O.2    Tomas, A.3    Obexer-Ruff, G.4    Vidal, O.5
  • 5
    • 77954057688 scopus 로고    scopus 로고
    • Ancestral polymorphism in exon 2 of bluethroat (Luscinia svecica) MHC class II B genes
    • Anmarkrud JA, Johnsen A, Bachmann L, Lifjeld JT (2010) Ancestral polymorphism in exon 2 of bluethroat (Luscinia svecica) MHC class II B genes. J Evol Biol 23:1206-1217
    • (2010) J Evol Biol , vol.23 , pp. 1206-1217
    • Anmarkrud, J.A.1    Johnsen, A.2    Bachmann, L.3    Lifjeld, J.T.4
  • 6
    • 0026546828 scopus 로고
    • Polymorphism, recombination, and linkage disequilibrium within the HLA class II region
    • Averdam A, McClure G, Suraj V et al (1992) Polymorphism, recombination, and linkage disequilibrium within the HLA class II region. J Immunol 148:249-258
    • (1992) J Immunol , vol.148 , pp. 249-258
    • Averdam, A.1    McClure, G.2    Suraj, V.3
  • 7
    • 78751643332 scopus 로고    scopus 로고
    • Sequence analysis of the grey mouse lemur (Microcebus murinus) MHC class II DQ and DR region
    • Averdam A, Kuschal C, Otto N et al (2010) Sequence analysis of the grey mouse lemur (Microcebus murinus) MHC class II DQ and DR region. Immunogenetics 63:1-9
    • (2010) Immunogenetics , vol.63 , pp. 1-9
    • Averdam, A.1    Kuschal, C.2    Otto, N.3
  • 8
    • 0033601201 scopus 로고    scopus 로고
    • Linkage disequilibrium and recombination in hominid mitochondrial DNA
    • Awadalla P, Eyre-Walker A, Smith JM (1999) Linkage disequilibrium and recombination in hominid mitochondrial DNA. Science 286:2524-2525
    • (1999) Science , vol.286 , pp. 2524-2525
    • Awadalla, P.1    Eyre-Walker, A.2    Smith, J.M.3
  • 9
    • 0026546828 scopus 로고
    • Polymorphism, recombination, and linkage disequilibrium within the HLA class II region
    • Begovich A, McClure G, Suraj V et al (1992) Polymorphism, recombination, and linkage disequilibrium within the HLA class II region. J Immunol 148:249-258
    • (1992) J Immunol , vol.148 , pp. 249-258
    • Begovich, A.1    McClure, G.2    Suraj, V.3
  • 10
    • 0037884727 scopus 로고    scopus 로고
    • MHC studies in nonmodel vertebrates: What have we learned about natural selection in 15 years?
    • DOI 10.1046/j.1420-9101.2003.00531.x
    • Bernatchez L, Landry C (2003) MHC studies in nonmodel vertebrates: what have we learned about natural selection in 15 years? J Evol Biol 16:363-377 (Pubitemid 36567968)
    • (2003) Journal of Evolutionary Biology , vol.16 , Issue.3 , pp. 363-377
    • Bernatchez, L.1    Landry, C.2
  • 11
    • 0032735753 scopus 로고    scopus 로고
    • Nomenclature for factors of the HLA system, 1998
    • Bodmer JG, Marsh SGE, Albert ED et al (1999) Nomenclature for factors of the HLA system, 1998. Tissue Antigens 53:407-446
    • (1999) Tissue Antigens , vol.53 , pp. 407-446
    • Bodmer, J.G.1    Marsh, S.G.E.2    Albert, E.D.3
  • 12
    • 34249810950 scopus 로고    scopus 로고
    • The spectrum of HLA-DQ and HLA-DR alleles, 2006: A listing correlating sequence and structure with function
    • DOI 10.1007/s00251-007-0224-8
    • Bondinas G, Moustakas A, Papadopoulos G (2007) The spectrum of HLA-DQ and HLA-DR alleles, 2006: a listing correlating sequence and structure with function. Immunogenetics 59:539-553 (Pubitemid 46850164)
    • (2007) Immunogenetics , vol.59 , Issue.7 , pp. 539-553
    • Bondinas, G.P.1    Moustakas, A.K.2    Papadopoulos, G.K.3
  • 14
    • 33645453416 scopus 로고    scopus 로고
    • Duplication, balancing selection and trans-species evolution explain the high levels of polymorphism of the DQA MHC class II gene in voles (Arvicolinae)
    • Bryja J, Galan M, Charbonnel N, Cosson JF (2006) Duplication, balancing selection and trans-species evolution explain the high levels of polymorphism of the DQA MHC class II gene in voles (Arvicolinae). Immunogenetics 58:191-202
    • (2006) Immunogenetics , vol.58 , pp. 191-202
    • Bryja, J.1    Galan, M.2    Charbonnel, N.3    Cosson, J.F.4
  • 15
    • 79953141979 scopus 로고    scopus 로고
    • MHC class II DQA gene variation across cohorts of brown hares (Lepus europaeus) from Eastern Austria: Testing for different selection hypotheses
    • Campos JL, Bellocq JGd, Schaschl H, Suchentrunk F (2011) MHC class II DQA gene variation across cohorts of brown hares (Lepus europaeus) from eastern Austria: testing for different selection hypotheses. Mamm Biol Z Saugetierkunde 76:251-257
    • (2011) Mamm Biol Z Saugetierkunde , vol.76 , pp. 251-257
    • Campos, J.L.1    Bellocq, J.G.D.2    Schaschl, H.3    Suchentrunk, F.4
  • 16
    • 0026653148 scopus 로고
    • Mapping of the rabbit MHC reveals that class I genes are adjacent to the DR subregion and defines an insertion/deletion-related polymorphism in the class II region
    • Chouchane L, Kindt T (1992) Mapping of the rabbit MHC reveals that class I genes are adjacent to the DR subregion and defines an insertion/deletion- related polymorphism in the class II region. J Immunol 149:1216-1222
    • (1992) J Immunol , vol.149 , pp. 1216-1222
    • Chouchane, L.1    Kindt, T.2
  • 17
    • 79955099391 scopus 로고    scopus 로고
    • Genetic structure and contrasting selection pattern at two major histocompatibility complex genes in wild house mouse populations
    • Čížková D, Goüy de Bellocq J, Baird SJE, Piálek J, Bryja J (2011) Genetic structure and contrasting selection pattern at two major histocompatibility complex genes in wild house mouse populations. Heredity 106(5):727-740
    • (2011) Heredity , vol.106 , Issue.5 , pp. 727-740
    • Čížková, D.1    Goüy De Bellocq, J.2    Baird, S.J.E.3    Piálek, J.4    Bryja, J.5
  • 18
    • 77951499819 scopus 로고    scopus 로고
    • MHC genetic structure and divergence across populations of chinook salmon (Oncorhyn-chus tshawytscha)
    • Evans ML, Neff BD, Heath DD (2010) MHC genetic structure and divergence across populations of Chinook salmon (Oncorhyn-chus tshawytscha). Heredity 104:449-459
    • (2010) Heredity , vol.104 , pp. 449-459
    • Evans, M.L.1    Neff, B.D.2    Heath, D.D.3
  • 19
    • 77953032930 scopus 로고    scopus 로고
    • Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under linux and windows
    • Excoffier L, Lischer HEL (2010) Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resourc 10:564-567
    • (2010) Mol Ecol Resourc , vol.10 , pp. 564-567
    • Excoffier, L.1    Lischer, H.E.L.2
  • 20
    • 0035675042 scopus 로고    scopus 로고
    • Estimating recombination rates from population genetic data
    • Fearnhead P, Donnelly P (2001) Estimating recombination rates from population genetic data. Genetics 159:1299-1318 (Pubitemid 34033469)
    • (2001) Genetics , vol.159 , Issue.3 , pp. 1299-1318
    • Fearnhead, P.1    Donnelly, P.2
  • 21
    • 0042785584 scopus 로고    scopus 로고
    • Perspective: Detecting adaptive molecular polymorphism: Lessons from the MHC
    • Garrigan D, Hedrick PW (2003) Perspective: detecting adaptive molecular polymorphism: lessons from the MHC. Evolution 57:1707-1722 (Pubitemid 37096389)
    • (2003) Evolution , vol.57 , Issue.8 , pp. 1707-1722
    • Garrigan, D.1    Hedrick, P.W.2
  • 22
    • 77955861083 scopus 로고    scopus 로고
    • MHC evolution in three salmonid species: A comparison between class II alpha and beta genes
    • Gomez D, Conejeros P, Marshall SH, Consuegra S (2010) MHC evolution in three salmonid species: a comparison between class II alpha and beta genes. Immunogenetics 62:531-542
    • (2010) Immunogenetics , vol.62 , pp. 531-542
    • Gomez, D.1    Conejeros, P.2    Marshall, S.H.3    Consuegra, S.4
  • 23
    • 0034938557 scopus 로고    scopus 로고
    • Untersuchungen zur reproduktiven fitness lebender weiblicher feldhasen aus unter-schiedlichen habitaten
    • Göritz F, Faßbender M, Broich A et al (2001) Untersuchungen zur reproduktiven Fitness lebender weiblicher Feldhasen aus unter-schiedlichen Habitaten. Z Jagdwissenschft 47:92
    • (2001) Z Jagdwissenschft , vol.47 , pp. 92
    • Göritz, F.1    Faßbender, M.2    Broich, A.3
  • 24
    • 59849092488 scopus 로고    scopus 로고
    • Evolutionary history of an MHC gene in two leporid species: Characterisation of mhc-DQA in the European brown hare and comparison with the European rabbit
    • Goüy de Bellocq J, Suchentrunk F, Baird S, Schaschl H (2009) Evolutionary history of an MHC gene in two leporid species: characterisation of Mhc-DQA in the European brown hare and comparison with the European rabbit. Immunogenetics 61:131-144
    • (2009) Immunogenetics , vol.61 , pp. 131-144
    • Goüy De Bellocq, J.1    Suchentrunk, F.2    Baird, S.3    Schaschl, H.4
  • 25
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis rogram for windows 95/98/NT
    • Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis rogram for Windows 95/98/NT. Nucl. Acids. Symp. Ser. 41:95-98
    • (1999) Nucl. Acids. Symp. Ser. , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 27
    • 0035692320 scopus 로고    scopus 로고
    • Two-locus sampling distributions and their application
    • Hudson RR (2001) Two-locus sampling distributions and their application. Genetics 159:1805-1817 (Pubitemid 34087616)
    • (2001) Genetics , vol.159 , Issue.4 , pp. 1805-1817
    • Hudson, R.R.1
  • 28
    • 51649095312 scopus 로고    scopus 로고
    • GST and its relatives do not measure differentiation
    • Jost L (2008) GST and its relatives do not measure differentiation. Mol Ecol 17:4015-4026
    • (2008) Mol Ecol , vol.17 , pp. 4015-4026
    • Jost, L.1
  • 29
    • 9744258860 scopus 로고    scopus 로고
    • The shaping of mitochondrial DNA phylogeographic patterns of the brown hare (Lepus europaeus) under the combined influence of Late Pleistocene climatic fluctuations and anthropogenic translocations
    • DOI 10.1016/j.ympev.2004.09.007, PII S105579030400288X
    • Kasapidis P, Suchentrunk F, Magoulas A, Kotoulas G (2005) The shaping of mitochondrial DNA phylogeographic patterns of the brown hare (Lepus europaeus) under the combined influence of Late Pleistocene climatic fluctuations and anthropogenic trans-locations. Mol Phylogenet Evol 34:55-66 (Pubitemid 39584194)
    • (2005) Molecular Phylogenetics and Evolution , vol.34 , Issue.1 , pp. 55-66
    • Kasapidis, P.1    Suchentrunk, F.2    Magoulas, A.3    Kotoulas, G.4
  • 31
    • 0027065953 scopus 로고
    • Parasites and sex: Catching the Red Queen
    • Ladle RJ (1992) Parasites and sex: catching the red queen. Trends Ecol Evol 7:405-408 (Pubitemid 23402162)
    • (1992) Trends in Ecology & Evolution , vol.7 , Issue.12 , pp. 405-408
    • Ladle, R.J.1
  • 32
    • 62849118749 scopus 로고    scopus 로고
    • Diversifying selection on MHC class I in the house sparrow (Passer domesticus)
    • Loiseau C, Richard M, Garnier S et al (2009) Diversifying selection on MHC class I in the house sparrow (Passer domesticus). Mol Ecol 18:1331-1340
    • (2009) Mol Ecol , vol.18 , pp. 1331-1340
    • Loiseau, C.1    Richard, M.2    Garnier, S.3
  • 33
    • 0036199914 scopus 로고    scopus 로고
    • A coalescent-based method for detecting and estimating recombination from gene sequences
    • McVean G, Awadalla P, Fearnhead P (2002) A coalescent-based method for detecting and estimating recombination from gene sequences. Genetics 160:1231-1241 (Pubitemid 34263482)
    • (2002) Genetics , vol.160 , Issue.3 , pp. 1231-1241
    • McVean, G.1    Awadalla, P.2    Fearnhead, P.3
  • 34
    • 33744780219 scopus 로고    scopus 로고
    • Isolation and characterization of a MHC class II DRB locus in the European water vole (Arvicola terrestris)
    • DOI 10.1007/s00251-006-0121-6
    • Oliver MK, Piertney SB (2006) Isolation and characterization of a MHC class II DRB locus in the European water vole (Arvicola terrestris). Immunogenetics 58:390-395 (Pubitemid 43830103)
    • (2006) Immunogenetics , vol.58 , Issue.5-6 , pp. 390-395
    • Oliver, M.K.1    Piertney, S.B.2
  • 36
    • 33644998297 scopus 로고    scopus 로고
    • The evolutionary ecology of the major histocompatibility complex
    • Piertney SB, Oliver MK (2006) The evolutionary ecology of the major histocompatibility complex. Heredity 96:7-21
    • (2006) Heredity , vol.96 , pp. 7-21
    • Piertney, S.B.1    Oliver, M.K.2
  • 37
    • 36849080837 scopus 로고    scopus 로고
    • GENEPOP'007: A complete re-implementation of the GENEPOP software for Windows and Linux
    • DOI 10.1111/j.1471-8286.2007.01931.x
    • Rousset F (2008) GENEPOP'007: A complete re-implementation of the GENEPOP software for Windows and Linux. Molecular Ecology Resources 8:103-106 (Pubitemid 350231212)
    • (2008) Molecular Ecology Resources , vol.8 , Issue.1 , pp. 103-106
    • Rousset, F.1
  • 38
    • 3342958250 scopus 로고    scopus 로고
    • MHC variability of a small lemur in the littoral forest fragments of southeastern Madagascar
    • DOI 10.1023/B:COGE.0000031137.50239.d3
    • Schad J, Sommer S, Ganzhorn JU (2004) MHC variability of a small lemur in the littoral forest fragments of southeastern Madagascar. Conservation Genetics 5:299-309 (Pubitemid 38983078)
    • (2004) Conservation Genetics , vol.5 , Issue.3 , pp. 299-309
    • Schad, J.1    Sommer, S.2    Ganzhorn, J.U.3
  • 39
    • 33845232923 scopus 로고    scopus 로고
    • Selection and recombination drive the evolution of MHC class II DRB diversity in ungulates
    • DOI 10.1038/sj.hdy.6800892, PII 6800892
    • Schaschl H, Wandeler P, Suchentrunk F, Obexer-Ruff G, Goodman SJ (2006) Selection and recombination drive the evolution of MHC class II DRB diversity in ungulates. Heredity 97:427-437 (Pubitemid 44851250)
    • (2006) Heredity , vol.97 , Issue.6 , pp. 427-437
    • Schaschl, H.1    Wandeler, P.2    Suchentrunk, F.3    Obexer-Ruff, G.4    Goodman, S.J.5
  • 40
    • 57349192293 scopus 로고    scopus 로고
    • Polymorphic MHC loci in an asexual fish, the amazon molly (Poecilia formosa; poeciliidae)
    • Schaschl H, Tobler M, Plath M, Penn DJ, Schlupp I (2008) Polymorphic MHC loci in an asexual fish, the amazon molly (Poecilia formosa; Poeciliidae). Mol Ecol 17:5220-5230
    • (2008) Mol Ecol , vol.17 , pp. 5220-5230
    • Schaschl, H.1    Tobler, M.2    Plath, M.3    Penn, D.J.4    Schlupp, I.5
  • 41
    • 77957221786 scopus 로고    scopus 로고
    • Homozygosity at a class II MHC locus depresses female reproductive ability in European brown hares
    • Smith S, Mang T, Goüy de Bellocq J et al (2010) Homozygosity at a class II MHC locus depresses female reproductive ability in European brown hares. Mol Ecol 19:4131-4143
    • (2010) Mol Ecol , vol.19 , pp. 4131-4143
    • Smith, S.1    Mang, T.2    Goüy De Bellocq, J.3
  • 42
    • 60349114162 scopus 로고    scopus 로고
    • Phylogeog-raphy of the brown hare (Lepus europaeus) in Europe: A legacy of south-eastern mediterranean refugia?
    • Stamatis C, Suchentrunk F, Moutou KA et al (2009) Phylogeog-raphy of the brown hare (Lepus europaeus) in Europe: a legacy of south-eastern Mediterranean refugia? J Biogeogr 36:515-528
    • (2009) J Biogeogr , vol.36 , pp. 515-528
    • Stamatis, C.1    Suchentrunk, F.2    Moutou, K.A.3
  • 43
    • 0028348369 scopus 로고
    • Crystal structure of the human class II MHC protein HLA-DR1 complexed with an influenza virus peptide
    • DOI 10.1038/368215a0
    • Stern LJ, Brown JH, Jardetzky TS et al (1994) Crystal structure of the human class II MHC protein HLA-DR1 complexed with an influenza virus peptide. Nature 368:215-221 (Pubitemid 24108837)
    • (1994) Nature , vol.368 , Issue.6468 , pp. 215-221
    • Stern, L.J.1    Brown, J.H.2    Jardetzky, T.S.3    Gorga, J.C.4    Urban, R.G.5    Strominger, J.L.6    Wiley, D.C.7
  • 44
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • DOI 10.1093/molbev/msm092
    • Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Molecular Biology and Evolution 24:1596-1599 (Pubitemid 47236692)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.8 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 45
    • 0028988470 scopus 로고
    • Both man and bird and beast: Comparative organization of MHC genes
    • DOI 10.1007/BF00188427
    • Trowsdale J (1995) Both man and bird and beast: comparative organization of MHC genes. Immunogenetics 41:1-17 (Pubitemid 24373334)
    • (1995) Immunogenetics , vol.41 , Issue.1 , pp. 1-17
    • Trowsdale, J.1
  • 46
    • 34247396543 scopus 로고    scopus 로고
    • Infectious diseases in European brown hare (Lepus europaeus)
    • Wibbelt G, Frölich K (2005) Infectious diseases in European brown hare (Lepus europaeus). Wildl Biol Pract 1:86-93
    • (2005) Wildl Biol Pract , vol.1 , pp. 86-93
    • Wibbelt, G.1    Frölich, K.2
  • 47
    • 33645229840 scopus 로고    scopus 로고
    • Estimating diversifying selection and functional constraint in the presence of recombination
    • Wilson DJ, McVean G (2006) Estimating diversifying selection and functional constraint in the presence of recombination. Genetics 172:1411-1425
    • (2006) Genetics , vol.172 , pp. 1411-1425
    • Wilson, D.J.1    McVean, G.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.