메뉴 건너뛰기




Volumn 9, Issue 8, 2008, Pages 651-658

Positive selection on mammalian MHC-DQ genes revisited from a multispecies perspective

Author keywords

[No Author keywords available]

Indexed keywords

HLA ANTIGEN; HLA DQ ANTIGEN; HLA DQA ANTIGEN; HLA DQB ANTIGEN; UNCLASSIFIED DRUG;

EID: 57249094355     PISSN: 14664879     EISSN: 14765470     Source Type: Journal    
DOI: 10.1038/gene.2008.62     Document Type: Article
Times cited : (18)

References (32)
  • 1
    • 0001359013 scopus 로고    scopus 로고
    • Natural selection and the evolutionary history of major histocompatibility complex loci
    • Hughes AL, Yeager M. Natural selection and the evolutionary history of major histocompatibility complex loci. Front Biosci 1998; 3: 509-516.
    • (1998) Front Biosci , vol.3 , pp. 509-516
    • Hughes, A.L.1    Yeager, M.2
  • 2
    • 0032930360 scopus 로고    scopus 로고
    • Evolution of the mammalian MHC: Natural selection, recombination, and convergent evolution
    • Yeager M, Hughes AL. Evolution of the mammalian MHC: Natural selection, recombination, and convergent evolution. Immunol Rev 1999; 167 45-58.
    • (1999) Immunol Rev , vol.167 , pp. 45-58
    • Yeager, M.1    Hughes, A.L.2
  • 4
    • 0033950851 scopus 로고    scopus 로고
    • Association of HLA-DQ and -DR alleles with protection from or infection with HIV-1
    • Roe DL, Lewis RE, Cruse JM. Association of HLA-DQ and -DR alleles with protection from or infection with HIV-1. Exp Mol Pathol 2000; 68: 21-28.
    • (2000) Exp Mol Pathol , vol.68 , pp. 21-28
    • Roe, D.L.1    Lewis, R.E.2    Cruse, J.M.3
  • 5
    • 31344474524 scopus 로고    scopus 로고
    • Human leukocyte antigen class II DQB1*0301, DRB1*1101 alleles and spontaneous clearance of hepatitis C virus infection: A meta-analysis
    • Hong X, Yu RB, Sun NX, Wang B, Xu YC, Wu GL. Human leukocyte antigen class II DQB1*0301, DRB1*1101 alleles and spontaneous clearance of hepatitis C virus infection: A meta-analysis. World J Gastroenterol 2005; 11: 7302-7307.
    • (2005) World J Gastroenterol , vol.11 , pp. 7302-7307
    • Hong, X.1    Yu, R.B.2    Sun, N.X.3    Wang, B.4    Xu, Y.C.5    Wu, G.L.6
  • 6
    • 42449144715 scopus 로고    scopus 로고
    • DR-DQ haplotypes and genotypes and type 1 diabetes risk: Analysis of the type 1 diabetes genetics consortium families
    • Erlich H, Valdes AM, Noble J, Carlson JA, Varney M, Concannon P et al DR-DQ haplotypes and genotypes and type 1 diabetes risk: analysis of the type 1 diabetes genetics consortium families. Diabetes 2008; 57: 1084-1092.
    • (2008) Diabetes , vol.57 , pp. 1084-1092
    • Erlich, H.1    Valdes, A.M.2    Noble, J.3    Carlson, J.A.4    Varney, M.5    Concannon, P.6
  • 7
    • 38049177777 scopus 로고    scopus 로고
    • Significant association of HLA-DQ5 with autoimmune hepatitis in Taiwan
    • Koay LB, Sun CS, Tsai SL, Lin CY. Significant association of HLA-DQ5 with autoimmune hepatitis in Taiwan. J Formos Med Assoc 2007; 106: 1063-1068.
    • (2007) J Formos Med Assoc , vol.106 , pp. 1063-1068
    • Koay, L.B.1    Sun, C.S.2    Tsai, S.L.3    Lin, C.Y.4
  • 8
    • 0042785584 scopus 로고    scopus 로고
    • Perspective: Detecting adaptive molecular polymorphism: Lessons from the MHC
    • Garrigan D, Hedrick PW. Perspective: Detecting adaptive molecular polymorphism: Lessons from the MHC. Evolution Int J Org Evolution 2003; 57: 1707-1722.
    • (2003) Evolution Int J Org Evolution , vol.57 , pp. 1707-1722
    • Garrigan, D.1    Hedrick, P.W.2
  • 9
    • 0032804975 scopus 로고    scopus 로고
    • Allelic diversity at the Mhc-DQA locus in cotton rats (Sigmodon hispidus) and a comparison of DQA sequences within the family muridae (Mammalia: Rodentia)
    • Pfau RS, Van Den Bussche RA, McBee K, Lochmiller RL. Allelic diversity at the Mhc-DQA locus in cotton rats (Sigmodon hispidus) and a comparison of DQA sequences within the family muridae (Mammalia: Rodentia). Immunogenetics 1999; 49: 886-893.
    • (1999) Immunogenetics , vol.49 , pp. 886-893
    • Pfau, R.S.1    Van Den Bussche, R.A.2    McBee, K.3    Lochmiller, R.L.4
  • 10
    • 14844358813 scopus 로고    scopus 로고
    • Allelic diversity at the Mhc-DQA locus of woodmouse populations (Apodemus sylvaticus present in the islands and mainland of the northern Mediterranean
    • De Bellocq JG, Delarbre C, Gachelin G, Morand S. Allelic diversity at the Mhc-DQA locus of woodmouse populations (Apodemus sylvaticus present in the islands and mainland of the northern Mediterranean. Glob Ecol Biogeogr 2005; 14: 115-122.
    • (2005) Glob Ecol Biogeogr , vol.14 , pp. 115-122
    • De Bellocq, J.G.1    Delarbre, C.2    Gachelin, G.3    Morand, S.4
  • 11
    • 33645453416 scopus 로고    scopus 로고
    • Duplication, balancing selection and trans-species evolution explain the high levels of polymorphism of the DQA MHC class II gene in voles (Arvicolinae)
    • Bryja J, Galan M, Charbonnel N, Cosson JF. Duplication, balancing selection and trans-species evolution explain the high levels of polymorphism of the DQA MHC class II gene in voles (Arvicolinae). Immunogenetics 2006; 58: 191-202.
    • (2006) Immunogenetics , vol.58 , pp. 191-202
    • Bryja, J.1    Galan, M.2    Charbonnel, N.3    Cosson, J.F.4
  • 14
    • 0032033678 scopus 로고    scopus 로고
    • d-peptide complexes reveal that high affinity can be achieved without large anchor residues
    • d-peptide complexes reveal that high affinity can be achieved without large anchor residues. Immunity 1998; 8: 319-329.
    • (1998) Immunity , vol.8 , pp. 319-329
    • Scott, C.A.1    Peterson, P.A.2    Teyton, L.3    Wilson, I.A.4
  • 15
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F, Huelsenbeck JP. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003; 19: 1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 16
    • 0347513220 scopus 로고    scopus 로고
    • DnaSP, DNA polymorphism analyses by the coalescent and other methods
    • Rozas J, Sanchez-Delbarrio JC, Messeguer X, Rozas R. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 2003; 19: 2496-2497.
    • (2003) Bioinformatics , vol.19 , pp. 2496-2497
    • Rozas, J.1    Sanchez-Delbarrio, J.C.2    Messeguer, X.3    Rozas, R.4
  • 17
    • 0042665284 scopus 로고    scopus 로고
    • Sequence variability analysis of human class I and class II MHC molecules: Functional and structural correlates of amino acid polymorphisms
    • Reche PA, Reinherz EL. Sequence variability analysis of human class I and class II MHC molecules: Functional and structural correlates of amino acid polymorphisms. J Mol Biol 2003; 331: 623-641.
    • (2003) J Mol Biol , vol.331 , pp. 623-641
    • Reche, P.A.1    Reinherz, E.L.2
  • 18
    • 0022507362 scopus 로고
    • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
    • Nei M, Gojobori T. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol 1986; 3: 418-426.
    • (1986) Mol Biol Evol , vol.3 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 19
    • 0022005270 scopus 로고
    • A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes
    • Li WH, Wu C, Luo CC. A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes. Mol Biol Evol 1985; 2: 150-174.
    • (1985) Mol Biol Evol , vol.2 , pp. 150-174
    • Li, W.H.1    Wu, C.2    Luo, C.C.3
  • 20
    • 0027533924 scopus 로고
    • Evolution of the Zfx and Zfy, genes: Rates and interdependence between the genes
    • Pamilo P, Bianchi NO. Evolution of the Zfx and Zfy, genes: Rates and interdependence between the genes. Mol Biol Evol 1993; 10: 271-281.
    • (1993) Mol Biol Evol , vol.10 , pp. 271-281
    • Pamilo, P.1    Bianchi, N.O.2
  • 21
    • 0030683599 scopus 로고    scopus 로고
    • Yang Z. PAML: A program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci 1997; 13: 555-556.
    • Yang Z. PAML: A program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci 1997; 13: 555-556.
  • 22
    • 16344378246 scopus 로고    scopus 로고
    • Bayes empirical Bayes inference of amino acid sites under positive selection
    • Yang Z, Wong WS, Nielsen R. Bayes empirical Bayes inference of amino acid sites under positive selection. Mol Biol Evol 2005; 22: 1107-1118.
    • (2005) Mol Biol Evol , vol.22 , pp. 1107-1118
    • Yang, Z.1    Wong, W.S.2    Nielsen, R.3
  • 23
    • 33751253721 scopus 로고    scopus 로고
    • Evaluation of six methods for estimating synonymous and nonsynonymous substitution rates
    • Zhang Z, Yu J. Evaluation of six methods for estimating synonymous and nonsynonymous substitution rates. Genomics Proteomics Bioinformatics 2006; 4: 173-181.
    • (2006) Genomics Proteomics Bioinformatics , vol.4 , pp. 173-181
    • Zhang, Z.1    Yu, J.2
  • 24
    • 0020024572 scopus 로고
    • Codon selection in yeast
    • Bennetzen JL, Hall BD. Codon selection in yeast. J Biol Chem 1982; 257: 3026-3031.
    • (1982) J Biol Chem , vol.257 , pp. 3026-3031
    • Bennetzen, J.L.1    Hall, B.D.2
  • 25
    • 0025318864 scopus 로고
    • The 'effective number of codons' used in a gene
    • Wright F. The 'effective number of codons' used in a gene. Gene 1990; 87: 23-29.
    • (1990) Gene , vol.87 , pp. 23-29
    • Wright, F.1
  • 26
    • 10344224528 scopus 로고    scopus 로고
    • Adjusting for selection on synonymous sites in estimates of evolutionary distance
    • Hirsh AE, Fraser HB, Wall DP. Adjusting for selection on synonymous sites in estimates of evolutionary distance. Mol Biol Evol 2005; 22: 174-177.
    • (2005) Mol Biol Evol , vol.22 , pp. 174-177
    • Hirsh, A.E.1    Fraser, H.B.2    Wall, D.P.3
  • 27
    • 0033979433 scopus 로고    scopus 로고
    • Synonymous and nonsynonymous substitution rates under realistic evolutionary models
    • Yang Z, Nielsen R. Synonymous and nonsynonymous substitution rates under realistic evolutionary models. Mol Biol Evol 2000; 17: 32-43.
    • (2000) Mol Biol Evol , vol.17 , pp. 32-43
    • Yang, Z.1    Nielsen, R.2
  • 28
    • 0042208362 scopus 로고    scopus 로고
    • Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites
    • Anisimova M, Nielsen R, Yang Z. Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites. Genetics 2003; 164: 1229-1236.
    • (2003) Genetics , vol.164 , pp. 1229-1236
    • Anisimova, M.1    Nielsen, R.2    Yang, Z.3
  • 29
    • 0036783307 scopus 로고    scopus 로고
    • High-resolution patterns of meiotic recombination across the human major histocompatibility complex
    • Cullen M, Perfetto SP, Klitz W, Nelson G, Carrington M. High-resolution patterns of meiotic recombination across the human major histocompatibility complex. Am J Hum Genet 2002; 71: 759-776.
    • (2002) Am J Hum Genet , vol.71 , pp. 759-776
    • Cullen, M.1    Perfetto, S.P.2    Klitz, W.3    Nelson, G.4    Carrington, M.5
  • 30
    • 34247116572 scopus 로고    scopus 로고
    • Haplotype analysis of the DQA genes in sheep: Evidence supporting recombination between the loci
    • Hickford JG, Zhou H, Fang Q. Haplotype analysis of the DQA genes in sheep: Evidence supporting recombination between the loci. J Anim Sci 2007; 85: 577-582.
    • (2007) J Anim Sci , vol.85 , pp. 577-582
    • Hickford, J.G.1    Zhou, H.2    Fang, Q.3
  • 31
    • 0029902262 scopus 로고    scopus 로고
    • Contribution of β chain residue 57 in peptide binding ability of both HLA-DR and -DQ molecules
    • Nepom BS, Nepom GT, Coleman M, Kwok WW. Contribution of β chain residue 57 in peptide binding ability of both HLA-DR and -DQ molecules. Proc Natl Acad Sci USA 1996; 93: 7202-7206.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 7202-7206
    • Nepom, B.S.1    Nepom, G.T.2    Coleman, M.3    Kwok, W.W.4
  • 32
    • 0032898815 scopus 로고    scopus 로고
    • Monomorphism and polymorphism at Mhc DRB loci in domestic and wild ruminants
    • Mikko S, Roed K, Schmutz S, Andersson L. Monomorphism and polymorphism at Mhc DRB loci in domestic and wild ruminants. Immunol Rev 1999; 167: 169-178.
    • (1999) Immunol Rev , vol.167 , pp. 169-178
    • Mikko, S.1    Roed, K.2    Schmutz, S.3    Andersson, L.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.