-
1
-
-
0037179716
-
Active genes are tri-methylated at K4 of histone H3
-
Santos-Rosa H., et al. Active genes are tri-methylated at K4 of histone H3. Nature 2002, 419:407-411.
-
(2002)
Nature
, vol.419
, pp. 407-411
-
-
Santos-Rosa, H.1
-
2
-
-
19944430797
-
Genomic maps and comparative analysis of histone modifications in human and mouse
-
Bernstein B.E., et al. Genomic maps and comparative analysis of histone modifications in human and mouse. Cell 2005, 120:169-181.
-
(2005)
Cell
, vol.120
, pp. 169-181
-
-
Bernstein, B.E.1
-
3
-
-
32844468049
-
Histone arginine methylation and its dynamic regulation
-
Wysocka J., et al. Histone arginine methylation and its dynamic regulation. Front Biosci 2006, 11:344-355.
-
(2006)
Front Biosci
, vol.11
, pp. 344-355
-
-
Wysocka, J.1
-
4
-
-
34547624303
-
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
-
Mikkelsen T.S., et al. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature 2007, 448:553-560.
-
(2007)
Nature
, vol.448
, pp. 553-560
-
-
Mikkelsen, T.S.1
-
5
-
-
34249026300
-
High-resolution profiling of histone methylations in the human genome
-
Barski A., et al. High-resolution profiling of histone methylations in the human genome. Cell 2007, 129:823-837.
-
(2007)
Cell
, vol.129
, pp. 823-837
-
-
Barski, A.1
-
6
-
-
58149214356
-
Global mapping of H3K4me3 and H3K27me3 reveals specificity and plasticity in lineage fate determination of differentiating CD4+ T cells
-
Wei G., et al. Global mapping of H3K4me3 and H3K27me3 reveals specificity and plasticity in lineage fate determination of differentiating CD4+ T cells. Immunity 2009, 30:155-167.
-
(2009)
Immunity
, vol.30
, pp. 155-167
-
-
Wei, G.1
-
7
-
-
58049191558
-
Chromatin signatures in multipotent human hematopoietic stem cells indicate the fate of bivalent genes during differentiation
-
Cui K., et al. Chromatin signatures in multipotent human hematopoietic stem cells indicate the fate of bivalent genes during differentiation. Cell Stem Cell 2009, 4:80-93.
-
(2009)
Cell Stem Cell
, vol.4
, pp. 80-93
-
-
Cui, K.1
-
8
-
-
34548424709
-
Whole-genome mapping of histone H3 Lys4 and 27 trimethylations reveals distinct genomic compartments in human embryonic stem cells
-
Zhao X.D., et al. Whole-genome mapping of histone H3 Lys4 and 27 trimethylations reveals distinct genomic compartments in human embryonic stem cells. Cell Stem Cell 2007, 1:286-298.
-
(2007)
Cell Stem Cell
, vol.1
, pp. 286-298
-
-
Zhao, X.D.1
-
9
-
-
24644472515
-
Antisense transcription in the mammalian transcriptome
-
Katayama S., et al. Antisense transcription in the mammalian transcriptome. Science 2005, 309:1564-1566.
-
(2005)
Science
, vol.309
, pp. 1564-1566
-
-
Katayama, S.1
-
10
-
-
78649449778
-
A comparison between ribo-minus RNA-sequencing and polyA-selected RNA-sequencing
-
Cui P., et al. A comparison between ribo-minus RNA-sequencing and polyA-selected RNA-sequencing. Genomics 2010, 96:259-265.
-
(2010)
Genomics
, vol.96
, pp. 259-265
-
-
Cui, P.1
-
11
-
-
69249217649
-
Regulatory roles of natural antisense transcripts
-
Faghihi M.A., Wahlestedt C. Regulatory roles of natural antisense transcripts. Nat Rev Mol Cell Biol 2009, 10:637-643.
-
(2009)
Nat Rev Mol Cell Biol
, vol.10
, pp. 637-643
-
-
Faghihi, M.A.1
Wahlestedt, C.2
-
12
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
Mortazavi A., et al. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods 2008, 5:621-628.
-
(2008)
Nat Methods
, vol.5
, pp. 621-628
-
-
Mortazavi, A.1
-
13
-
-
38949194937
-
Crucial role of antisense transcription across the Xist promoter in Tsix-mediated Xist chromatin modification
-
Ohhata T., et al. Crucial role of antisense transcription across the Xist promoter in Tsix-mediated Xist chromatin modification. Development 2008, 135:227-235.
-
(2008)
Development
, vol.135
, pp. 227-235
-
-
Ohhata, T.1
-
14
-
-
54049138948
-
Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation
-
Pandey R.R., et al. Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation. Mol Cell 2008, 32:232-246.
-
(2008)
Mol Cell
, vol.32
, pp. 232-246
-
-
Pandey, R.R.1
-
15
-
-
0030712112
-
Expression of the thyroid hormone receptor gene, erbAalpha, in B lymphocytes: alternative mRNA processing is independent of differentiation but correlates with antisense RNA levels
-
Hastings M.L., et al. Expression of the thyroid hormone receptor gene, erbAalpha, in B lymphocytes: alternative mRNA processing is independent of differentiation but correlates with antisense RNA levels. Nucleic Acids Res 1997, 25:4296-4300.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4296-4300
-
-
Hastings, M.L.1
-
16
-
-
0038813723
-
RNA editing and regulation of Drosophila 4f-rnp expression by sas-10 antisense readthrough mRNA transcripts
-
Peters N.T., et al. RNA editing and regulation of Drosophila 4f-rnp expression by sas-10 antisense readthrough mRNA transcripts. RNA 2003, 9:698-710.
-
(2003)
RNA
, vol.9
, pp. 698-710
-
-
Peters, N.T.1
-
17
-
-
46749083733
-
Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of beta-secretase
-
Faghihi M.A., et al. Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of beta-secretase. Nat Med 2008, 14:723-730.
-
(2008)
Nat Med
, vol.14
, pp. 723-730
-
-
Faghihi, M.A.1
-
18
-
-
29244490062
-
Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis
-
Borsani O., et al. Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis. Cell 2005, 123:1279-1291.
-
(2005)
Cell
, vol.123
, pp. 1279-1291
-
-
Borsani, O.1
-
19
-
-
84863478347
-
Comparative analyses of H3K4 and H3K27 trimethylations between the mouse cerebrum and testis
-
Cui P., Liu W., Zhao Y., Lin Q., Zhang D., Ding F., et al. Comparative analyses of H3K4 and H3K27 trimethylations between the mouse cerebrum and testis. Genomics Proteomics Bioinformatics 2012, http://dx.doi.org/10.gpb.2012.05.007.
-
(2012)
Genomics Proteomics Bioinformatics
-
-
Cui, P.1
Liu, W.2
Zhao, Y.3
Lin, Q.4
Zhang, D.5
Ding, F.6
-
20
-
-
33846057724
-
NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
-
Pruitt K.D., et al. NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res 2007, 35:D61-65.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Pruitt, K.D.1
-
21
-
-
23844519339
-
A high-resolution map of active promoters in the human genome
-
Kim T.H., et al. A high-resolution map of active promoters in the human genome. Nature 2005, 436:876-880.
-
(2005)
Nature
, vol.436
, pp. 876-880
-
-
Kim, T.H.1
-
22
-
-
0033598146
-
Wnt signalling shows its versatility
-
Bejsovec A. Wnt signalling shows its versatility. Curr Biol 1999, 9:R684-R687.
-
(1999)
Curr Biol
, vol.9
-
-
Bejsovec, A.1
-
23
-
-
18144377731
-
Maternal segregation of the Dutch preeclampsia locus at 10q22 with a new member of the winged helix gene family
-
van Dijk M., et al. Maternal segregation of the Dutch preeclampsia locus at 10q22 with a new member of the winged helix gene family. Nat Genet 2005, 37:514-519.
-
(2005)
Nat Genet
, vol.37
, pp. 514-519
-
-
van Dijk, M.1
-
24
-
-
78049400268
-
Dynamic changes in genome-wide histone H3 lysine 4 methylation patterns in response to dehydration stress in Arabidopsis thaliana
-
van Dijk K., et al. Dynamic changes in genome-wide histone H3 lysine 4 methylation patterns in response to dehydration stress in Arabidopsis thaliana. BMC Plant Biol 2010, 10:238.
-
(2010)
BMC Plant Biol
, vol.10
, pp. 238
-
-
van Dijk, K.1
-
25
-
-
24644519490
-
The transcriptional landscape of the mammalian genome
-
Carninci P., et al. The transcriptional landscape of the mammalian genome. Science 2005, 309:1559-1563.
-
(2005)
Science
, vol.309
, pp. 1559-1563
-
-
Carninci, P.1
-
26
-
-
44349144551
-
Comparative expression analysis uncovers novel features of endogenous antisense transcription
-
Okada Y., et al. Comparative expression analysis uncovers novel features of endogenous antisense transcription. Hum Mol Genet 2008, 17:1631-1640.
-
(2008)
Hum Mol Genet
, vol.17
, pp. 1631-1640
-
-
Okada, Y.1
-
27
-
-
57849105533
-
The antisense transcriptomes of human cells
-
He Y., et al. The antisense transcriptomes of human cells. Science 2008, 322:1855-1857.
-
(2008)
Science
, vol.322
, pp. 1855-1857
-
-
He, Y.1
-
28
-
-
57849109058
-
Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
-
Core L.J., et al. Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science 2008, 322:1845-1848.
-
(2008)
Science
, vol.322
, pp. 1845-1848
-
-
Core, L.J.1
-
29
-
-
57849140661
-
Divergent transcription from active promoters
-
Seila A.C., et al. Divergent transcription from active promoters. Science 2008, 322:1849-1851.
-
(2008)
Science
, vol.322
, pp. 1849-1851
-
-
Seila, A.C.1
-
30
-
-
57849123049
-
RNA exosome depletion reveals transcription upstream of active human promoters
-
Preker P., et al. RNA exosome depletion reveals transcription upstream of active human promoters. Science 2008, 322:1851-1854.
-
(2008)
Science
, vol.322
, pp. 1851-1854
-
-
Preker, P.1
-
31
-
-
41549129240
-
Mapping of small RNAs in the human ENCODE regions
-
Borel C., et al. Mapping of small RNAs in the human ENCODE regions. Am J Hum Genet 2008, 82:971-981.
-
(2008)
Am J Hum Genet
, vol.82
, pp. 971-981
-
-
Borel, C.1
-
32
-
-
34250160256
-
RNA maps reveal new RNA classes and a possible function for pervasive transcription
-
Kapranov P., et al. RNA maps reveal new RNA classes and a possible function for pervasive transcription. Science 2007, 316:1484-1488.
-
(2007)
Science
, vol.316
, pp. 1484-1488
-
-
Kapranov, P.1
-
33
-
-
67650711619
-
A clustering approach for identification of enriched domains from histone modification ChIP-Seq data
-
Zang C., et al. A clustering approach for identification of enriched domains from histone modification ChIP-Seq data. Bioinformatics 2009, 25:1952-1958.
-
(2009)
Bioinformatics
, vol.25
, pp. 1952-1958
-
-
Zang, C.1
-
34
-
-
38849149795
-
28-Way vertebrate alignment and conservation track in the UCSC Genome Browser
-
Miller W., et al. 28-Way vertebrate alignment and conservation track in the UCSC Genome Browser. Genome Res 2007, 17:1797-1808.
-
(2007)
Genome Res
, vol.17
, pp. 1797-1808
-
-
Miller, W.1
|