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Volumn 7, Issue 2, 2012, Pages

Signatures of selection in the genomes of commercial and non-commercial chicken breeds

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

EID: 84863231960     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0032720     Document Type: Article
Times cited : (68)

References (54)
  • 1
    • 77950080740 scopus 로고    scopus 로고
    • Whole-genome resequencing reveals loci under selection during chicken domestication
    • Rubin C, Zody MC, Eriksson J, Meadows JRS, Sherwood E, et al. (2010) Whole-genome resequencing reveals loci under selection during chicken domestication. Nature 464: 587-591.
    • (2010) Nature , vol.464 , pp. 587-591
    • Rubin, C.1    Zody, M.C.2    Eriksson, J.3    Meadows, J.R.S.4    Sherwood, E.5
  • 2
    • 84863299011 scopus 로고
    • The Variation of Animals and Plants under Domestication
    • Darwin C, (1868) The Variation of Animals and Plants under Domestication. Macmillan Publishers Limited.
    • (1868) Macmillan Publishers Limited
    • Darwin, C.1
  • 3
    • 0014248734 scopus 로고
    • Molecular genetics of avian proteins. IX. Interspecific and intraspecific variation of egg white proteins of the genus gallus
    • Baker C, (1968) Molecular genetics of avian proteins. IX. Interspecific and intraspecific variation of egg white proteins of the genus gallus. Genetics 58: 211-226.
    • (1968) Genetics , vol.58 , pp. 211-226
    • Baker, C.1
  • 7
    • 0003624816 scopus 로고
    • New York, McGraw Hill Book Company Inc
    • Hutt FB, (1949) Genetics of the Fowl New York McGraw Hill Book Company Inc.
    • (1949) Genetics of the Fowl
    • Hutt, F.B.1
  • 9
    • 0024157551 scopus 로고
    • Did chicken go north? New evidence for domestication
    • West B, Zhou B-X, (1988) Did chicken go north? New evidence for domestication. J Archaeol Sci 15: 515-533.
    • (1988) J Archaeol Sci , vol.15 , pp. 515-533
    • West, B.1    Zhou, B.-X.2
  • 11
    • 47749095996 scopus 로고    scopus 로고
    • Genetic evidence from Indian red jungle fowl corroborates multiple domestication of modern day chicken
    • Kanginakudru S, Metta M, Jakati R, Nagaraju J, (2008) Genetic evidence from Indian red jungle fowl corroborates multiple domestication of modern day chicken. BMC Evolutionary Biology 8: 174.
    • (2008) BMC Evolutionary Biology , vol.8 , pp. 174
    • Kanginakudru, S.1    Metta, M.2    Jakati, R.3    Nagaraju, J.4
  • 14
    • 0642342401 scopus 로고    scopus 로고
    • Growth, livability, and feed conversion of 1957 versus 2001 broilers when fed representative 1957 and 2001 broiler diets
    • Havenstein GB, Ferket PR, Qureshi MA, (2003) Growth, livability, and feed conversion of 1957 versus 2001 broilers when fed representative 1957 and 2001 broiler diets. Poultry Science 82: 1500-1508.
    • (2003) Poultry Science , vol.82 , pp. 1500-1508
    • Havenstein, G.B.1    Ferket, P.R.2    Qureshi, M.A.3
  • 15
    • 28844443822 scopus 로고    scopus 로고
    • Chicken genome: Current status and future opportunities
    • Burt DW, (2005) Chicken genome: Current status and future opportunities. Genome Research 15: 1692-1698.
    • (2005) Genome Research , vol.15 , pp. 1692-1698
    • Burt, D.W.1
  • 17
    • 0016220238 scopus 로고
    • The hitch-hiking effect of a favourable gene
    • Smith J, Haigh J, (1974) The hitch-hiking effect of a favourable gene. Genetics Research 23: 23-35.
    • (1974) Genetics Research , vol.23 , pp. 23-35
    • Smith, J.1    Haigh, J.2
  • 18
    • 0026322339 scopus 로고
    • Lack of Polymorphism on the Drosophila Fourth Chromosome Resulting From Selection
    • Berry AJ, Ajioka JW, Kreitman M, (1991) Lack of Polymorphism on the Drosophila Fourth Chromosome Resulting From Selection. Genetics 129: 1111-1117.
    • (1991) Genetics , vol.129 , pp. 1111-1117
    • Berry, A.J.1    Ajioka, J.W.2    Kreitman, M.3
  • 20
    • 0032245668 scopus 로고    scopus 로고
    • Rapid growth problems: ascites and skeletal deformities in broilers
    • Julian RJ, (1998) Rapid growth problems: ascites and skeletal deformities in broilers. Poulty Science 77: 1773-1780.
    • (1998) Poulty Science , vol.77 , pp. 1773-1780
    • Julian, R.J.1
  • 21
    • 0034222969 scopus 로고    scopus 로고
    • Osteoporosis in cage layers
    • Whitehead C, Fleming R, (2000) Osteoporosis in cage layers. Poultry Science 79: 1033-1041.
    • (2000) Poultry Science , vol.79 , pp. 1033-1041
    • Whitehead, C.1    Fleming, R.2
  • 22
    • 0242340498 scopus 로고    scopus 로고
    • Ascites Syndrome (Pulmonary Hypertension Syndrome) in Broiler Chickens: Are We Seeing the Light at the End of the Tunnel?
    • Balog JM, (2003) Ascites Syndrome (Pulmonary Hypertension Syndrome) in Broiler Chickens: Are We Seeing the Light at the End of the Tunnel? Avian and Poultry Biology Reviews 14: 99-126.
    • (2003) Avian and Poultry Biology Reviews , vol.14 , pp. 99-126
    • Balog, J.M.1
  • 23
    • 41949119414 scopus 로고    scopus 로고
    • Ascites syndrome in broilers: physiological and nutritional perspectives
    • Baghbanzadeh A, Decuypere E, (2008) Ascites syndrome in broilers: physiological and nutritional perspectives. Avian Pathology 37: 117-126.
    • (2008) Avian Pathology , vol.37 , pp. 117-126
    • Baghbanzadeh, A.1    Decuypere, E.2
  • 24
    • 84948271737 scopus 로고
    • Ascites in poultry
    • Julian RJ, (1993) Ascites in poultry. Avian Pathology 22: 419-454.
    • (1993) Avian Pathology , vol.22 , pp. 419-454
    • Julian, R.J.1
  • 25
    • 33745508385 scopus 로고    scopus 로고
    • Genetic mapping of quantitative trait loci affecting susceptibility in chicken to develop pulmonary hypertension syndrome
    • Rabie TSKM, Crooijmans RPMA, Bovenhuis H, Vereijken ALJ, Veenendaal T, et al. (2005) Genetic mapping of quantitative trait loci affecting susceptibility in chicken to develop pulmonary hypertension syndrome. Animal Genetics 36: 468-476.
    • (2005) Animal Genetics , vol.36 , pp. 468-476
    • Rabie, T.S.K.M.1    Crooijmans, R.P.M.A.2    Bovenhuis, H.3    Vereijken, A.L.J.4    Veenendaal, T.5
  • 26
    • 74049086779 scopus 로고    scopus 로고
    • Comparison of linkage disequilibrium and haplotype diversity on macro- and microchromosomes in chicken
    • Megens H-J, Crooijmans R, Bastiaansen J, Kerstens H, Coster A, et al. (2009) Comparison of linkage disequilibrium and haplotype diversity on macro- and microchromosomes in chicken. BMC Genetics 10: 86.
    • (2009) BMC Genetics , vol.10 , pp. 86
    • Megens, H.-J.1    Crooijmans, R.2    Bastiaansen, J.3    Kerstens, H.4    Coster, A.5
  • 27
    • 84899111236 scopus 로고    scopus 로고
    • East Asian contributions to Dutch traditional and western commercial chickens inferred from mtDNA analysis
    • doi:10.1111
    • Dana N, Megens HJ, Crooijmans RPMA, Olivier H, Mwacharo J, et al. (2010) East Asian contributions to Dutch traditional and western commercial chickens inferred from mtDNA analysis. Animal Genetics doi:10.1111.
    • (2010) Animal Genetics
    • Dana, N.1    Megens, H.J.2    Crooijmans, R.P.M.A.3    Olivier, H.4    Mwacharo, J.5
  • 28
    • 79957628638 scopus 로고    scopus 로고
    • The development and characterization of a 60 K SNP chip for chicken
    • Groenen MA, Megens HJ, Zare Y, Warren WC, Hillier LW, et al. (2011) The development and characterization of a 60 K SNP chip for chicken. BMC Genomics 12 (1): 274.
    • (2011) BMC Genomics , vol.12 , Issue.1 , pp. 274
    • Groenen, M.A.1    Megens, H.J.2    Zare, Y.3    Warren, W.C.4    Hillier, L.W.5
  • 29
    • 17744380449 scopus 로고    scopus 로고
    • Cheap, accurate and rapid allele frequency estimation of single nucleotide polymorphisms by primer extension and DHPLC in DNA pools
    • Hoogendoorn B, Norton N, Kirov G, Williams N, Hamshere M, et al. (2000) Cheap, accurate and rapid allele frequency estimation of single nucleotide polymorphisms by primer extension and DHPLC in DNA pools. Human Genetics 107: 488-493.
    • (2000) Human Genetics , vol.107 , pp. 488-493
    • Hoogendoorn, B.1    Norton, N.2    Kirov, G.3    Williams, N.4    Hamshere, M.5
  • 30
    • 78651389097 scopus 로고    scopus 로고
    • Predicting allele frequencies in DNA pools using high density SNP genotyping data
    • Peiris BL, Ralph J, Lamont SJ, Dekkers JCM, (2010) Predicting allele frequencies in DNA pools using high density SNP genotyping data. Animal Genetic 42: 113-116.
    • (2010) Animal Genetic , vol.42 , pp. 113-116
    • Peiris, B.L.1    Ralph, J.2    Lamont, S.J.3    Dekkers, J.C.M.4
  • 31
    • 0003437302 scopus 로고    scopus 로고
    • PHYLIP (Phylogeny Inference Package) version 3.6
    • Distributed by the author. Department of Genome Sciences, University of Washington, Seattle
    • Felsenstein J, (2005) PHYLIP (Phylogeny Inference Package) version 3.6. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle.
    • (2005)
    • Felsenstein, J.1
  • 32
    • 0000655270 scopus 로고
    • Genetic distance between populations
    • Nei M, (1972) Genetic distance between populations. American Naturalist 106: 283-292.
    • (1972) American Naturalist , vol.106 , pp. 283-292
    • Nei, M.1
  • 33
    • 37349111572 scopus 로고    scopus 로고
    • Biodiversity of pig breeds from China and Europe estimated from pooled DNA samples: differences in microsatellite variation between two areas of domestication
    • Megens HJ, Crooijmans RPMA, San Cristobal M, Hui X, Li N, et al. (2008) Biodiversity of pig breeds from China and Europe estimated from pooled DNA samples: differences in microsatellite variation between two areas of domestication. Genetics Selection Evolution 40: 103-128.
    • (2008) Genetics Selection Evolution , vol.40 , pp. 103-128
    • Megens, H.J.1    Crooijmans, R.P.M.A.2    San Cristobal, M.3    Hui, X.4    Li, N.5
  • 34
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • Tamura K, Dudley J, Nei M, Kumar S, (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Molecular Biology and Evolution 24: 1596-1599.
    • (2007) Molecular Biology and Evolution , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 37
    • 0642342400 scopus 로고    scopus 로고
    • Identification of three single nucleotide polymorphisms in the chicken insulin-like growth factor 1 and 2 genes and their associations with growth and feeding traits
    • Amills M, Jimenez N, Villalba D, Tor M, Molina E, et al. (2003) Identification of three single nucleotide polymorphisms in the chicken insulin-like growth factor 1 and 2 genes and their associations with growth and feeding traits. Poultry Science 82: 1485-1493.
    • (2003) Poultry Science , vol.82 , pp. 1485-1493
    • Amills, M.1    Jimenez, N.2    Villalba, D.3    Tor, M.4    Molina, E.5
  • 38
    • 13444287982 scopus 로고    scopus 로고
    • Insulin-like growth factor-I gene polymorphism associations with growth, body composition, skeleton integrity, and metabolic traits in chickens
    • Zhou H, Mitchell A, McMurtry J, Ashwell C, Lamont S, (2005) Insulin-like growth factor-I gene polymorphism associations with growth, body composition, skeleton integrity, and metabolic traits in chickens. Poultry Science 84: 212-219.
    • (2005) Poultry Science , vol.84 , pp. 212-219
    • Zhou, H.1    Mitchell, A.2    McMurtry, J.3    Ashwell, C.4    Lamont, S.5
  • 41
    • 77954569149 scopus 로고    scopus 로고
    • Mapping QTL for growth and shank traits in chickens divergently selected for high or low body weight
    • Ankra-Badu GA, Bihan-Duval EL, Mignon-Grasteau S, Pitel F, Beaumont C, et al. (2010) Mapping QTL for growth and shank traits in chickens divergently selected for high or low body weight. Animal Genetics 41: 400-405.
    • (2010) Animal Genetics , vol.41 , pp. 400-405
    • Ankra-Badu, G.A.1    Bihan-Duval, E.L.2    Mignon-Grasteau, S.3    Pitel, F.4    Beaumont, C.5
  • 42
    • 33645815089 scopus 로고    scopus 로고
    • Nell1-deficient mice have reduced expression of extracellular matrix proteins causing cranial and vertebral defects
    • Desai J, Shannon ME, Johnson MD, Ruff DW, Hughes LA, et al. (2006) Nell1-deficient mice have reduced expression of extracellular matrix proteins causing cranial and vertebral defects. Hum an Molecular Genetics 15: 1329-1341.
    • (2006) Hum an Molecular Genetics , vol.15 , pp. 1329-1341
    • Desai, J.1    Shannon, M.E.2    Johnson, M.D.3    Ruff, D.W.4    Hughes, L.A.5
  • 43
    • 38049046208 scopus 로고    scopus 로고
    • Involvement of MAPK signaling molecules and Runx2 in the NELL1-induced osteoblastic differentiation
    • Bokui N, Otani T, Igarashi K, Kaku J, Oda M, et al. (2008) Involvement of MAPK signaling molecules and Runx2 in the NELL1-induced osteoblastic differentiation. FEBS Letters 582: 365-371.
    • (2008) FEBS Letters , vol.582 , pp. 365-371
    • Bokui, N.1    Otani, T.2    Igarashi, K.3    Kaku, J.4    Oda, M.5
  • 44
    • 33947546599 scopus 로고    scopus 로고
    • Genome-Wide Linkage Analysis to Identify Chromosomal Regions Affecting Phenotypic Traits in the Chicken. III. Skeletal Integrity
    • Zhou H, Deeb N, Evock-Clover CM, Mitchell AD, Ashwell CM, et al. (2007) Genome-Wide Linkage Analysis to Identify Chromosomal Regions Affecting Phenotypic Traits in the Chicken. III. Skeletal Integrity. Poultry Science 86: 255-266.
    • (2007) Poultry Science , vol.86 , pp. 255-266
    • Zhou, H.1    Deeb, N.2    Evock-Clover, C.M.3    Mitchell, A.D.4    Ashwell, C.M.5
  • 45
    • 33846033395 scopus 로고    scopus 로고
    • AnimalQTLdb: a livestock QTL database tool set for positional QTL information mining and beyond
    • Hu Z-L, Fritz ER, Reecy JM, (2007) AnimalQTLdb: a livestock QTL database tool set for positional QTL information mining and beyond. Nucleic Acids Research 35: D604-D609.
    • (2007) Nucleic Acids Research , vol.35
    • Hu, Z.-L.1    Fritz, E.R.2    Reecy, J.M.3
  • 46
    • 10644271562 scopus 로고    scopus 로고
    • A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms
    • International Chicken Polymorphism Map Consortium
    • International Chicken Polymorphism Map Consortium (2004) A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms. Nature 432: 717-722.
    • (2004) Nature , vol.432 , pp. 717-722
  • 47
    • 61849153558 scopus 로고    scopus 로고
    • A high-density SNP-based linkage map of the chicken genome reveals sequence features correlated with recombination rate
    • Groenen MA, Wahlberg P, Foglio M, Cheng H, Megens H, et al. (2009) A high-density SNP-based linkage map of the chicken genome reveals sequence features correlated with recombination rate. Genome Res 19: 510-519.
    • (2009) Genome Res , vol.19 , pp. 510-519
    • Groenen, M.A.1    Wahlberg, P.2    Foglio, M.3    Cheng, H.4    Megens, H.5
  • 49
    • 0032875460 scopus 로고    scopus 로고
    • Mechanism of Action and In Vivo Role of Platelet-Derived Growth Factor
    • Heldin C-H, Westermark B, (1999) Mechanism of Action and In Vivo Role of Platelet-Derived Growth Factor. Physiological Reviews 79: 1283-1316.
    • (1999) Physiological Reviews , vol.79 , pp. 1283-1316
    • Heldin, C.-H.1    Westermark, B.2
  • 50
    • 0035826891 scopus 로고    scopus 로고
    • Chromosomal Location, Exon Structure, and Vascular Expression Patterns of the Human PDGFC and PDGFD Genes
    • Uutela M, Lauren J, Bergsten E, Li X, Horelli-Kuitunen N, et al. (2001) Chromosomal Location, Exon Structure, and Vascular Expression Patterns of the Human PDGFC and PDGFD Genes. Circulation 103: 2242-2247.
    • (2001) Circulation , vol.103 , pp. 2242-2247
    • Uutela, M.1    Lauren, J.2    Bergsten, E.3    Li, X.4    Horelli-Kuitunen, N.5
  • 51
    • 0034706020 scopus 로고    scopus 로고
    • The mouse Pdgfc gene: dynamic expression in embryonic tissues during organogenesis
    • Ding H, Wu X, Kim I, Tam PPL, Koh GY, et al. (2000) The mouse Pdgfc gene: dynamic expression in embryonic tissues during organogenesis. Mechanisms of Development 96: 209-213.
    • (2000) Mechanisms of Development , vol.96 , pp. 209-213
    • Ding, H.1    Wu, X.2    Kim, I.3    Tam, P.P.L.4    Koh, G.Y.5
  • 52
    • 34547637869 scopus 로고    scopus 로고
    • Quantitative trait loci for bone traits segregating independently of those for growth in an F2 broiler x layer cross
    • Sharman PWA, Morrice DR, Law AS, Burt DW, Hocking PM, (2007) Quantitative trait loci for bone traits segregating independently of those for growth in an F2 broiler x layer cross. Cytogenetic and Genome Research 117: 296-304.
    • (2007) Cytogenetic and Genome Research , vol.117 , pp. 296-304
    • Sharman, P.W.A.1    Morrice, D.R.2    Law, A.S.3    Burt, D.W.4    Hocking, P.M.5
  • 53
    • 70449380498 scopus 로고    scopus 로고
    • Mapping quantitative trait loci regulating chicken body composition traits
    • Gao Y, Du ZQ, Wei WH, Yu XJ, Deng XM, et al. (2009) Mapping quantitative trait loci regulating chicken body composition traits. Animal Genetics 40: 952-954.
    • (2009) Animal Genetics , vol.40 , pp. 952-954
    • Gao, Y.1    Du, Z.Q.2    Wei, W.H.3    Yu, X.J.4    Deng, X.M.5


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