메뉴 건너뛰기




Volumn 10, Issue , 2009, Pages

Comparison of linkage disequilibrium and haplotype diversity on macro- and microchromosomes in chicken

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHICKEN; CHROMOSOME; CHROMOSOME SIZE; COMPARATIVE STUDY; CONTROLLED STUDY; FEMALE; GENE FREQUENCY; GENE LINKAGE DISEQUILIBRIUM; GENETIC RECOMBINATION; GENETIC VARIABILITY; HAPLOTYPE; HETEROZYGOSITY; HOMOZYGOSITY; MACROCHROMOSOME; MALE; MICROCHROMOSOME; NONHUMAN; SINGLE NUCLEOTIDE POLYMORPHISM; ANIMAL; CHROMOSOME MAP; DNA SEQUENCE; GENETICS; POPULATION GENETICS;

EID: 74049086779     PISSN: None     EISSN: 14712156     Source Type: Journal    
DOI: 10.1186/1471-2156-10-86     Document Type: Article
Times cited : (64)

References (33)
  • 1
    • 1542350622 scopus 로고    scopus 로고
    • Domestic-animal genomics: deciphering the genetics of complex traits
    • 10.1038/nrg1294, 14970822
    • Andersson L, Georges M. Domestic-animal genomics: deciphering the genetics of complex traits. Nat Rev Genet 2004, 5:202-212. 10.1038/nrg1294, 14970822.
    • (2004) Nat Rev Genet , vol.5 , pp. 202-212
    • Andersson, L.1    Georges, M.2
  • 4
    • 52049099430 scopus 로고    scopus 로고
    • Linkage Disequilibrium Decay and Haplotype Block Structure in the Pig
    • 10.1534/genetics.107.084277, 2390633, 18493072
    • Amaral AJ, Megens H, Crooijmans RPMA, Heuven HCM, Groenen MAM. Linkage Disequilibrium Decay and Haplotype Block Structure in the Pig. Genetics 2008, 179:569-579. 10.1534/genetics.107.084277, 2390633, 18493072.
    • (2008) Genetics , vol.179 , pp. 569-579
    • Amaral, A.J.1    Megens, H.2    Crooijmans, R.P.M.A.3    Heuven, H.C.M.4    Groenen, M.A.M.5
  • 5
    • 37249066995 scopus 로고    scopus 로고
    • Linkage Disequilibrium in Related Breeding Lines of Chickens
    • 10.1534/genetics.107.082206, 2219483, 17947400
    • Andreescu C, Avendano S, Brown SR, Hassen A, Lamont SJ, Dekkers JCM. Linkage Disequilibrium in Related Breeding Lines of Chickens. Genetics 2007, 177:2161-9. 10.1534/genetics.107.082206, 2219483, 17947400.
    • (2007) Genetics , vol.177 , pp. 2161-2169
    • Andreescu, C.1    Avendano, S.2    Brown, S.R.3    Hassen, A.4    Lamont, S.J.5    Dekkers, J.C.M.6
  • 6
    • 26444519053 scopus 로고    scopus 로고
    • Extent and Consistency Across Generations of Linkage Disequilibrium in Commercial Layer Chicken Breeding Populations
    • 10.1534/genetics.105.040782, 1456820, 16118198
    • Heifetz EM, Fulton JE, O'Sullivan N, Zhao H, Dekkers JCM, Soller M. Extent and Consistency Across Generations of Linkage Disequilibrium in Commercial Layer Chicken Breeding Populations. Genetics 2005, 171:1173-1181. 10.1534/genetics.105.040782, 1456820, 16118198.
    • (2005) Genetics , vol.171 , pp. 1173-1181
    • Heifetz, E.M.1    Fulton, J.E.2    O'Sullivan, N.3    Zhao, H.4    Dekkers, J.C.M.5    Soller, M.6
  • 7
    • 52049096371 scopus 로고    scopus 로고
    • Linkage Disequilibrium and Persistence of Phase in Holstein-Friesian, Jersey and Angus Cattle
    • 10.1534/genetics.107.084301, 2475750, 18622038
    • de Roos APW, Hayes BJ, Spelman RJ, Goddard ME. Linkage Disequilibrium and Persistence of Phase in Holstein-Friesian, Jersey and Angus Cattle. Genetics 2008, 179:1503-1512. 10.1534/genetics.107.084301, 2475750, 18622038.
    • (2008) Genetics , vol.179 , pp. 1503-1512
    • de Roos, A.P.W.1    Hayes, B.J.2    Spelman, R.J.3    Goddard, M.E.4
  • 8
    • 79959524146 scopus 로고    scopus 로고
    • A haplotype map of the human genome
    • 10.1038/nature04226, 1880871, 16255080, International HapMap Consortium
    • International HapMap Consortium A haplotype map of the human genome. Nature 2005, 437:1299-320. 10.1038/nature04226, 1880871, 16255080, International HapMap Consortium.
    • (2005) Nature , vol.437 , pp. 1299-1320
  • 9
    • 35348983887 scopus 로고    scopus 로고
    • A second generation human haplotype map of over 3.1 million SNPs
    • 10.1038/nature06258, 2689609, 17943122, International HapMap Consortium
    • International HapMap Consortium A second generation human haplotype map of over 3.1 million SNPs. Nature 2007, 449:851-61. 10.1038/nature06258, 2689609, 17943122, International HapMap Consortium.
    • (2007) Nature , vol.449 , pp. 851-861
  • 11
    • 34248231212 scopus 로고    scopus 로고
    • The evolution of the avian genome as revealed by comparative molecular cytogenetics
    • 10.1159/000103166, 17675846
    • Griffin DK, Robertson LBW, Tempest HG, Skinner BM. The evolution of the avian genome as revealed by comparative molecular cytogenetics. Cytogenet Genome Res 2007, 117:64-77. 10.1159/000103166, 17675846.
    • (2007) Cytogenet Genome Res , vol.117 , pp. 64-77
    • Griffin, D.K.1    Robertson, L.B.W.2    Tempest, H.G.3    Skinner, B.M.4
  • 12
    • 39749124923 scopus 로고    scopus 로고
    • Characterization of chromosome structures of Falconinae (Falconidae, Falconiformes, Aves) by chromosome painting and delineation of chromosome rearrangements during their differentiation
    • 10.1007/s10577-007-1210-6, 18293111
    • Nishida C, Ishijima J, Kosaka A, Tanabe H, Habermann FA, Griffin DK, Matsuda Y. Characterization of chromosome structures of Falconinae (Falconidae, Falconiformes, Aves) by chromosome painting and delineation of chromosome rearrangements during their differentiation. Chromosome Res 2008, 16:171-81. 10.1007/s10577-007-1210-6, 18293111.
    • (2008) Chromosome Res , vol.16 , pp. 171-181
    • Nishida, C.1    Ishijima, J.2    Kosaka, A.3    Tanabe, H.4    Habermann, F.A.5    Griffin, D.K.6    Matsuda, Y.7
  • 13
    • 10644283823 scopus 로고    scopus 로고
    • Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    • 10.1038/nature03154, 15592404, Chicken genome consortium
    • Chicken genome consortium Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 2004, 432:695-716. 10.1038/nature03154, 15592404, Chicken genome consortium.
    • (2004) Nature , vol.432 , pp. 695-716
  • 16
    • 33646884615 scopus 로고    scopus 로고
    • Strong Regional Biases in Nucleotide Substitution in the Chicken Genome
    • 10.1093/molbev/msk008, 16551647
    • Webster MT, Axelsson E, Ellegren H. Strong Regional Biases in Nucleotide Substitution in the Chicken Genome. Mol Biol Evol 2006, 23:1203-1216. 10.1093/molbev/msk008, 16551647.
    • (2006) Mol Biol Evol , vol.23 , pp. 1203-1216
    • Webster, M.T.1    Axelsson, E.2    Ellegren, H.3
  • 20
    • 13444269543 scopus 로고    scopus 로고
    • Haploview: analysis and visualization of LD and haplotype maps
    • 10.1093/bioinformatics/bth457, 15297300
    • Barrett JC, Fry B, Maller J, Daly MJ. Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics 2005, 21:263-5. 10.1093/bioinformatics/bth457, 15297300.
    • (2005) Bioinformatics , vol.21 , pp. 263-265
    • Barrett, J.C.1    Fry, B.2    Maller, J.3    Daly, M.J.4
  • 21
    • 0015070635 scopus 로고
    • Linkage disequilibrium and homozygosity of chromosome segments in finite populations
    • 10.1016/0040-5809(71)90011-6, 5170716
    • Sved JA. Linkage disequilibrium and homozygosity of chromosome segments in finite populations. Theor Popul Biol 1971, 2:125-41. 10.1016/0040-5809(71)90011-6, 5170716.
    • (1971) Theor Popul Biol , vol.2 , pp. 125-141
    • Sved, J.A.1
  • 22
    • 0242500969 scopus 로고    scopus 로고
    • Novel multilocus measure of linkage disequilibrium to estimate past effective population size
    • 10.1101/gr.387103, 430161, 12654718
    • Hayes BJ, Visscher PM, McPartlan HC, Goddard ME. Novel multilocus measure of linkage disequilibrium to estimate past effective population size. Genome Res 2003, 13:635-43. 10.1101/gr.387103, 430161, 12654718.
    • (2003) Genome Res , vol.13 , pp. 635-643
    • Hayes, B.J.1    Visscher, P.M.2    McPartlan, H.C.3    Goddard, M.E.4
  • 23
    • 34147165220 scopus 로고    scopus 로고
    • Recent human effective population size estimated from linkage disequilibrium
    • 10.1101/gr.6023607, 1832099, 17351134
    • Tenesa A, Navarro P, Hayes BJ, Duffy DL, Clarke GM, Goddard ME, Visscher PM. Recent human effective population size estimated from linkage disequilibrium. Genome Res 2007, 17:520-6. 10.1101/gr.6023607, 1832099, 17351134.
    • (2007) Genome Res , vol.17 , pp. 520-526
    • Tenesa, A.1    Navarro, P.2    Hayes, B.J.3    Duffy, D.L.4    Clarke, G.M.5    Goddard, M.E.6    Visscher, P.M.7
  • 25
    • 0003437299 scopus 로고    scopus 로고
    • PHYLIP (Phylogeny Inference Package), version 3.66
    • Distributed by the author. Department of Genome Sciences, University of Washington, Seattle
    • Felsenstein. PHYLIP (Phylogeny Inference Package), version 3.66. 2008, Distributed by the author. Department of Genome Sciences, University of Washington, Seattle.
    • (2008)
    • Felsenstein1
  • 28
    • 43249091960 scopus 로고    scopus 로고
    • Positive correlation between recombination rate and nucleotide diversity is shown under domestication selection in the chicken genome
    • Fang L, Ye J, Li N, Zhang Y, Li S, Wong G, Wang J. Positive correlation between recombination rate and nucleotide diversity is shown under domestication selection in the chicken genome. Chinese Science Bulletin 2008, 53:746-750.
    • (2008) Chinese Science Bulletin , vol.53 , pp. 746-750
    • Fang, L.1    Ye, J.2    Li, N.3    Zhang, Y.4    Li, S.5    Wong, G.6    Wang, J.7
  • 29
    • 12744271852 scopus 로고    scopus 로고
    • Comparison of the chicken and turkey genomes reveals a higher rate of nucleotide divergence on microchromosomes than macrochromosomes
    • 10.1101/gr.3021305, 540272, 15590944
    • Axelsson E, Webster MT, Smith NG, Burt DW, Ellegren H. Comparison of the chicken and turkey genomes reveals a higher rate of nucleotide divergence on microchromosomes than macrochromosomes. Genome Res 2005, 15:120-125. 10.1101/gr.3021305, 540272, 15590944.
    • (2005) Genome Res , vol.15 , pp. 120-125
    • Axelsson, E.1    Webster, M.T.2    Smith, N.G.3    Burt, D.W.4    Ellegren, H.5
  • 32
    • 0029150074 scopus 로고
    • A Comparison of Linkage Disequilibrium Measures for Fine-Scale Mapping
    • 10.1006/geno.1995.9003, 8666377
    • Devlin B, Risch N. A Comparison of Linkage Disequilibrium Measures for Fine-Scale Mapping. Genomics 1995, 29:311-322. 10.1006/geno.1995.9003, 8666377.
    • (1995) Genomics , vol.29 , pp. 311-322
    • Devlin, B.1    Risch, N.2
  • 33
    • 46449095087 scopus 로고    scopus 로고
    • Mathematical properties of the r2 measure of linkage disequilibrium
    • 10.1016/j.tpb.2008.05.006, 2580747, 18572214
    • VanLiere JM, Rosenberg NA. Mathematical properties of the r2 measure of linkage disequilibrium. Theor Popul Biol 2008, 74:130-137. 10.1016/j.tpb.2008.05.006, 2580747, 18572214.
    • (2008) Theor Popul Biol , vol.74 , pp. 130-137
    • VanLiere, J.M.1    Rosenberg, N.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.