메뉴 건너뛰기




Volumn 15, Issue 12, 2005, Pages 1692-1698

Chicken genome: Current status and future opportunities

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

EID: 28844443822     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.4141805     Document Type: Review
Times cited : (128)

References (60)
  • 2
    • 1542350622 scopus 로고    scopus 로고
    • Domestic-animal genomics: Deciphering the genetics of complex traits
    • Andersson, L. and Georges, M. 2004. Domestic-animal genomics: Deciphering the genetics of complex traits. Nat. Rev. Genet. 5: 202-212.
    • (2004) Nat. Rev. Genet. , vol.5 , pp. 202-212
    • Andersson, L.1    Georges, M.2
  • 3
    • 16244366172 scopus 로고    scopus 로고
    • Genomic resources for chicken
    • Antin, P.B. and Konieczka, J.H. 2005. Genomic resources for chicken. Dev. Dyn. 232: 877-882.
    • (2005) Dev. Dyn. , vol.232 , pp. 877-882
    • Antin, P.B.1    Konieczka, J.H.2
  • 4
    • 4944241218 scopus 로고    scopus 로고
    • Characterization of the first non-mammalian T2 cytokine gene cluster: The cluster contains functional single-copy genes for IL-3, IL-4, IL-13, and GM-CSF, a gene for IL-5 that appears to be a pseudogene, and a gene encoding another cytokine-like transcript, KK34
    • Avery, S., Rothwell, L., Degen, W.D., Schijns, V.E., Young, J., Kaufman, J., and Kaiser, P. 2004. Characterization of the first non-mammalian T2 cytokine gene cluster: The cluster contains functional single-copy genes for IL-3, IL-4, IL-13, and GM-CSF, a gene for IL-5 that appears to be a pseudogene, and a gene encoding another cytokine-like transcript, KK34. J. Interferon Cytokine Res. 24: 600-610.
    • (2004) J. Interferon Cytokine Res. , vol.24 , pp. 600-610
    • Avery, S.1    Rothwell, L.2    Degen, W.D.3    Schijns, V.E.4    Young, J.5    Kaufman, J.6    Kaiser, P.7
  • 5
    • 12744271852 scopus 로고    scopus 로고
    • Comparison of the chicken and turkey genomes reveals a higher rate of nucleotide divergence on microchromosomes than macrochromosomes
    • Axelsson, E., Webster, M.T., Smith, N.G.C., Burt, D.W., and Ellegren, H. 2005. Comparison of the chicken and turkey genomes reveals a higher rate of nucleotide divergence on microchromosomes than macrochromosomes. Genome Res. 15: 120-125.
    • (2005) Genome Res. , vol.15 , pp. 120-125
    • Axelsson, E.1    Webster, M.T.2    Smith, N.G.C.3    Burt, D.W.4    Ellegren, H.5
  • 7
    • 12744263078 scopus 로고    scopus 로고
    • Comparative architectures of mammalian and chicken genomes reveal highly variable rates of genomic rearrangements across different lineages
    • Bourque, G., Zdobnov, E.M., Bork, P., Pevzner, P.A., and Tesler, G. 2005. Comparative architectures of mammalian and chicken genomes reveal highly variable rates of genomic rearrangements across different lineages. Genome Res. 15: 98-110.
    • (2005) Genome Res. , vol.15 , pp. 98-110
    • Bourque, G.1    Zdobnov, E.M.2    Bork, P.3    Pevzner, P.A.4    Tesler, G.5
  • 8
    • 0037306116 scopus 로고    scopus 로고
    • The chicken as a model for large-scale analysis of vertebrate gene function
    • Brown, W.R., Hubbard, S.J., Tickle, C., and Wilson, S.A. 2003. The chicken as a model for large-scale analysis of vertebrate gene function. Nat. Rev. Genet. 4: 87-98.
    • (2003) Nat. Rev. Genet. , vol.4 , pp. 87-98
    • Brown, W.R.1    Hubbard, S.J.2    Tickle, C.3    Wilson, S.A.4
  • 10
    • 0035982210 scopus 로고    scopus 로고
    • Applications of biotechnology in the poultry industry
    • Burt, D.W. 2002. Applications of biotechnology in the poultry industry. Worlds Poult. Sci. J. 58: 5-13.
    • (2002) Worlds Poult. Sci. J. , vol.58 , pp. 5-13
    • Burt, D.W.1
  • 11
    • 13544277257 scopus 로고    scopus 로고
    • Chicken genomics charts a path to the genome sequence
    • _. 2004a. Chicken genomics charts a path to the genome sequence. Brief. Funct. Genomic Proteomic 3: 60-67.
    • (2004) Brief. Funct. Genomic Proteomic , vol.3 , pp. 60-67
  • 12
    • 3543110787 scopus 로고    scopus 로고
    • The chicken genome and the developmental biologist
    • _. 2004b. The chicken genome and the developmental biologist. Mech. Dev. 121: 1129-1135.
    • (2004) Mech. Dev. , vol.121 , pp. 1129-1135
  • 13
    • 0343290726 scopus 로고    scopus 로고
    • Chicken gene maps
    • Burt, D.W. and Cheng, H.H. 1998. Chicken gene maps. ILAR J. 39: 229-236.
    • (1998) ILAR J. , vol.39 , pp. 229-236
    • Burt, D.W.1    Cheng, H.H.2
  • 16
    • 17144431821 scopus 로고    scopus 로고
    • Comparative gene finding in chicken indicates that we are closing in on the set of multi-exonic widely expressed human genes
    • Castelo, R., Reymond, A., Wyss, C., Camara, F., Parra, G., Antonarakis, S.E., Guigó, R., and Eyras, E. 2005. Comparative gene finding in chicken indicates that we are closing in on the set of multi-exonic widely expressed human genes. Nucleic Acids Res. 33: 1935-1939.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 1935-1939
    • Castelo, R.1    Reymond, A.2    Wyss, C.3    Camara, F.4    Parra, G.5    Antonarakis, S.E.6    Guigó, R.7    Eyras, E.8
  • 17
    • 16244370130 scopus 로고    scopus 로고
    • Chicken genome: New tools and concepts
    • Dequeant, M.L. and Pourquié, O. 2005. Chicken genome: New tools and concepts. Dev. Dyn. 232: 883-886.
    • (2005) Dev. Dyn. , vol.232 , pp. 883-886
    • Dequeant, M.L.1    Pourquié, O.2
  • 18
    • 23644455108 scopus 로고    scopus 로고
    • Chicken orthologues of mammalian imprinted genes are clustered on macrochromosomes and replicate asynchronously
    • Dunzinger, U., Nanda, I., Schmid, M., Haaf, T., and Zechner, U. 2005. Chicken orthologues of mammalian imprinted genes are clustered on macrochromosomes and replicate asynchronously. Trends Genet. 21: 488-492.
    • (2005) Trends Genet. , vol.21 , pp. 488-492
    • Dunzinger, U.1    Nanda, I.2    Schmid, M.3    Haaf, T.4    Zechner, U.5
  • 19
  • 20
    • 14944384742 scopus 로고    scopus 로고
    • The avian genome uncovered
    • Ellegren, H. 2005. The avian genome uncovered. Trends Ecol. Evol. 20: 180-186.
    • (2005) Trends Ecol. Evol. , vol.20 , pp. 180-186
    • Ellegren, H.1
  • 22
    • 3042701155 scopus 로고    scopus 로고
    • Epigenomics: Beyond CpG islands
    • Fazzari, M.J. and Greally, J.M. 2004. Epigenomics: Beyond CpG islands. Nat. Rev. Genet. 5: 446-455.
    • (2004) Nat. Rev. Genet. , vol.5 , pp. 446-455
    • Fazzari, M.J.1    Greally, J.M.2
  • 23
    • 0028558687 scopus 로고
    • One subspecies of the red junglefowl (Gallus gallus gallus) suffices as the matriarchic ancestor of all domestic breeds
    • Fumihito, A., Miyake, T., Sumi, S., Takada, M., Ohno, S., and Kondo, N. 1994. One subspecies of the red junglefowl (Gallus gallus gallus) suffices as the matriarchic ancestor of all domestic breeds. Proc. Natl. Acad. Sci. 91: 12505-12509.
    • (1994) Proc. Natl. Acad. Sci. , vol.91 , pp. 12505-12509
    • Fumihito, A.1    Miyake, T.2    Sumi, S.3    Takada, M.4    Ohno, S.5    Kondo, N.6
  • 24
    • 84979132203 scopus 로고
    • The comparative genetics of color in rodents and carnivora
    • Haldane, J.B.S. 1927. The comparative genetics of color in rodents and carnivora. Biol. Rev. Camb. Philos. Soc. 2: 199-212.
    • (1927) Biol. Rev. Camb. Philos. Soc. , vol.2 , pp. 199-212
    • Haldane, J.B.S.1
  • 25
    • 0036846746 scopus 로고    scopus 로고
    • The origin and evolution of model organisms
    • Hedges, S.B. 2002. The origin and evolution of model organisms. Nat. Rev. Genet. 3: 838-849.
    • (2002) Nat. Rev. Genet. , vol.3 , pp. 838-849
    • Hedges, S.B.1
  • 26
    • 0013979181 scopus 로고
    • The effect of linkage on limits to artificial selection
    • Hill, W.G. and Robertson, A. 1966. The effect of linkage on limits to artificial selection. Genet. Res. 8: 269-294.
    • (1966) Genet. Res. , vol.8 , pp. 269-294
    • Hill, W.G.1    Robertson, A.2
  • 28
    • 22244468344 scopus 로고    scopus 로고
    • Review on QTL mapping results in chickens
    • Hocking, P. 2005. Review on QTL mapping results in chickens. Worlds Poult. Sci. J. 61: 215-226.
    • (2005) Worlds Poult. Sci. J. , vol.61 , pp. 215-226
    • Hocking, P.1
  • 30
    • 15244344647 scopus 로고    scopus 로고
    • DNA repeat arrays in chicken and human genomes and the adaptive evolution of avian genome size
    • Hughes, A.L. and Piontkivska, H. 2005. DNA repeat arrays in chicken and human genomes and the adaptive evolution of avian genome size. BMC Evol. Biol. 5: 12.
    • (2005) BMC Evol. Biol. , vol.5 , pp. 12
    • Hughes, A.L.1    Piontkivska, H.2
  • 34
    • 17444437765 scopus 로고    scopus 로고
    • Integrating genomic homology into gene structure prediction
    • Korf, I., Flicek, P., Duan, D., and Brent, M.R. 2001. Integrating genomic homology into gene structure prediction. Bioinformatics 17 Suppl 1: 140-148.
    • (2001) Bioinformatics , vol.17 , Issue.1 SUPPL. , pp. 140-148
    • Korf, I.1    Flicek, P.2    Duan, D.3    Brent, M.R.4
  • 35
    • 0042911716 scopus 로고    scopus 로고
    • In silico identification of components of the Toll-like receptor (TLR) signaling pathway in clustered chicken expressed sequence tags (ESTs)
    • Lynn, D.J., Lloyd, A.T., and O'Farrelly, C. 2003. In silico identification of components of the Toll-like receptor (TLR) signaling pathway in clustered chicken expressed sequence tags (ESTs). Vet. Immunol. Immunopathol. 93: 177-184.
    • (2003) Vet. Immunol. Immunopathol. , vol.93 , pp. 177-184
    • Lynn, D.J.1    Lloyd, A.T.2    O'Farrelly, C.3
  • 38
    • 2442651458 scopus 로고    scopus 로고
    • Recombination drives the evolution of GC-content in the human genome
    • Meunier, J. and Duret, L. 2004. Recombination drives the evolution of GC-content in the human genome. Mol. Biol. Evol. 21: 984-990.
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 984-990
    • Meunier, J.1    Duret, L.2
  • 39
    • 0022367620 scopus 로고
    • The ribosomal RNA gene cluster in aneuploid chickens: Evidence for increased gene dosage and regulation of gene expression
    • Muscarella, D.E., Vogt, V.M., and Bloom, S.E. 1985. The ribosomal RNA gene cluster in aneuploid chickens: Evidence for increased gene dosage and regulation of gene expression. J. Cell Biol. 101: 1749-1756.
    • (1985) J. Cell Biol. , vol.101 , pp. 1749-1756
    • Muscarella, D.E.1    Vogt, V.M.2    Bloom, S.E.3
  • 40
    • 3543124712 scopus 로고    scopus 로고
    • Gain- And loss-of-function in chick embryos by electroporation
    • Nakamura, H., Katahira, T., Sato, T., Watanabe, Y., and Funahashi, J.-I. 2004. Gain- and loss-of-function in chick embryos by electroporation. Mech. Dev. 121: 1137-1143.
    • (2004) Mech. Dev. , vol.121 , pp. 1137-1143
    • Nakamura, H.1    Katahira, T.2    Sato, T.3    Watanabe, Y.4    Funahashi, J.-I.5
  • 44
    • 0027097611 scopus 로고
    • Early and late replicative chromosomal banding patterns of Gallus domesticus
    • Ponce de Leon, F.A., Li, Y., and Weng, Z. 1992. Early and late replicative chromosomal banding patterns of Gallus domesticus. J. Hered. 83: 36-42.
    • (1992) J. Hered. , vol.83 , pp. 36-42
    • Ponce De Leon, F.A.1    Li, Y.2    Weng, Z.3
  • 47
    • 3543055751 scopus 로고    scopus 로고
    • Prospects for transgenesis in the chick
    • Sang, H. 2004. Prospects for transgenesis in the chick. Mech. Dev. 121: 1179-1186.
    • (2004) Mech. Dev. , vol.121 , pp. 1179-1186
    • Sang, H.1
  • 49
  • 50
    • 2942627978 scopus 로고    scopus 로고
    • In-silico identification of chicken immune-related genes
    • Smith, J., Speed, D., Law, A.S., Glass, E.J., and Burt, D.W. 2004. In-silico identification of chicken immune-related genes. Immunogenetics 56: 122-133.
    • (2004) Immunogenetics , vol.56 , pp. 122-133
    • Smith, J.1    Speed, D.2    Law, A.S.3    Glass, E.J.4    Burt, D.W.5
  • 52
    • 3543144805 scopus 로고    scopus 로고
    • The chick embryo - Past, present and future as a model system in developmental biology
    • Stern, C.D. 2004. The chick embryo - Past, present and future as a model system in developmental biology. Mech. Dev. 121: 1011-1013.
    • (2004) Mech. Dev. , vol.121 , pp. 1011-1013
    • Stern, C.D.1
  • 53
    • 11244302359 scopus 로고    scopus 로고
    • The chick: A great model system becomes even greater
    • _. 2005. The chick: A great model system becomes even greater. Dev. Cell 8: 9-17.
    • (2005) Dev. Cell , vol.8 , pp. 9-17
  • 54
    • 0034211022 scopus 로고    scopus 로고
    • An expressed sequence tag database of T-cell enriched activated chicken splenocytes: Sequence analysis of 5251 clones
    • Tirunagaru, V.G., Sofer, L., Cui, J., and Burnside, J. 2000. An expressed sequence tag database of T-cell enriched activated chicken splenocytes: Sequence analysis of 5251 clones. Genomics 66: 144-151.
    • (2000) Genomics , vol.66 , pp. 144-151
    • Tirunagaru, V.G.1    Sofer, L.2    Cui, J.3    Burnside, J.4
  • 55
    • 3543060533 scopus 로고    scopus 로고
    • Efficient identification of regulatory sequences in the chicken genome by a powerful combination of embryo electroporation and genome comparison
    • Uchikawa, M., Takemoto, T., Kamachi, Y., and Kondoh, H. 2004. Efficient identification of regulatory sequences in the chicken genome by a powerful combination of embryo electroporation and genome comparison. Mech. Dev. 121: 1145-1158.
    • (2004) Mech. Dev. , vol.121 , pp. 1145-1158
    • Uchikawa, M.1    Takemoto, T.2    Kamachi, Y.3    Kondoh, H.4
  • 57
    • 25444522653 scopus 로고    scopus 로고
    • Genomic organization, annotation, and ligand-receptor inferences of chicken chemokines and chemokine receptor genes based on comparative genomics
    • Wang, J., Adelson, D.L., Yilmaz, A., Sze, S.H., Jin, Y., and Zhu, J.J. 2005a. Genomic organization, annotation, and ligand-receptor inferences of chicken chemokines and chemokine receptor genes based on comparative genomics. BMC Genomics 6: 45.
    • (2005) BMC Genomics , vol.6 , pp. 45
    • Wang, J.1    Adelson, D.L.2    Yilmaz, A.3    Sze, S.H.4    Jin, Y.5    Zhu, J.J.6
  • 59
    • 10644271562 scopus 로고    scopus 로고
    • A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms
    • Wong, G.K., Liu, B., Wang, J., Zhang, Y., Yang, X., Zhang, Z., Meng, Q., Zhou, J., Li, D., Zhang, J., et al. 2004. A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms. Nature 432: 717-722.
    • (2004) Nature , vol.432 , pp. 717-722
    • Wong, G.K.1    Liu, B.2    Wang, J.3    Zhang, Y.4    Yang, X.5    Zhang, Z.6    Meng, Q.7    Zhou, J.8    Li, D.9    Zhang, J.10
  • 60
    • 19944433230 scopus 로고    scopus 로고
    • Structural and functional analysis of a 0.5-Mb chicken region orthologous to the imprinted mammalian Ascl2/Mash2-Igf2-H19 region
    • Yokomine, T., Shirohzu, H., Purbowasito, W., Toyoda, A., Iwama, H., Ikeo, K., Hori, T., Mizuno, S., Tsudzuki, M., Matsuda, Y., et al. 2005. Structural and functional analysis of a 0.5-Mb chicken region orthologous to the imprinted mammalian Ascl2/Mash2-Igf2-H19 region. Genome Res. 15: 154-165.
    • (2005) Genome Res. , vol.15 , pp. 154-165
    • Yokomine, T.1    Shirohzu, H.2    Purbowasito, W.3    Toyoda, A.4    Iwama, H.5    Ikeo, K.6    Hori, T.7    Mizuno, S.8    Tsudzuki, M.9    Matsuda, Y.10


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.