메뉴 건너뛰기




Volumn 32, Issue 5, 2012, Pages 1884-1897

Gene coexpression networks in human brain identify epigenetic modifications in alcohol dependence

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTOME;

EID: 84863011005     PISSN: 02706474     EISSN: 15292401     Source Type: Journal    
DOI: 10.1523/JNEUROSCI.3136-11.2012     Document Type: Article
Times cited : (319)

References (64)
  • 1
    • 38649124003 scopus 로고    scopus 로고
    • Epigenetic targets of HDAC inhibition in neurodegenerative and psychiatric disorders
    • Abel T, Zukin RS (2008) Epigenetic targets of HDAC inhibition in neurodegenerative and psychiatric disorders. Curr Opin Pharmacol 8:57-64.
    • (2008) Curr Opin Pharmacol , vol.8 , pp. 57-64
    • Abel, T.1    Zukin, R.S.2
  • 3
    • 70350704831 scopus 로고    scopus 로고
    • Molecular mechanisms mediated by human endogenous retroviruses (HERVs) in autoimmunity
    • Balada E, Ordi-Ros J, Vilardell-Tarrés M (2009) Molecular mechanisms mediated by human endogenous retroviruses (HERVs) in autoimmunity. Rev Med Virol 19:273-286.
    • (2009) Rev Med Virol , vol.19 , pp. 273-286
    • Balada, E.1    Ordi-Ros, J.2    Vilardell-Tarrés, M.3
  • 4
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Statist Soc B 57:289-300.
    • (1995) J R Statist Soc B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 6
    • 75649104798 scopus 로고    scopus 로고
    • Homocysteine, alcoholism and its molecular networks
    • Bleich S, Hillemacher T (2009) Homocysteine, alcoholism and its molecular networks. Pharmacopsychiatry 42 [Suppl 1]:S102-S109.
    • (2009) Pharmacopsychiatry , vol.42 , Issue.SUPPL 1
    • Bleich, S.1    Hillemacher, T.2
  • 8
    • 78851470367 scopus 로고    scopus 로고
    • Increased oxidative DNA damage in patients with alcohol dependence and its correlation with alcohol withdrawal severity
    • Chen CH, Pan CH, Chen CC, Huang MC (2011) Increased oxidative DNA damage in patients with alcohol dependence and its correlation with alcohol withdrawal severity. Alcohol Clin Exp Res 35:338-344.
    • (2011) Alcohol Clin Exp Res , vol.35 , pp. 338-344
    • Chen, C.H.1    Pan, C.H.2    Chen, C.C.3    Huang, M.C.4
  • 9
    • 0032729779 scopus 로고    scopus 로고
    • Chronic alcohol consumption induces genomic but not p53-specific DNA hypomethylation in rat colon
    • Choi SW, Stickel F, Baik HW, Kim YI, Seitz HK, Mason JB (1999) Chronic alcohol consumption induces genomic but not p53-specific DNA hypomethylation in rat colon. J Nutr 129:1945-1950.
    • (1999) J Nutr , vol.129 , pp. 1945-1950
    • Choi, S.W.1    Stickel, F.2    Baik, H.W.3    Kim, Y.I.4    Seitz, H.K.5    Mason, J.B.6
  • 10
    • 51449099030 scopus 로고    scopus 로고
    • Review. Neurogenetic studies of alcohol addiction
    • Crabbe JC (2008) Review. Neurogenetic studies of alcohol addiction. Philos Trans R Soc Lond B Biol Sci 363:3201-3211.
    • (2008) Philos Trans R Soc Lond B Biol Sci , vol.363 , pp. 3201-3211
    • Crabbe, J.C.1
  • 11
    • 79955729616 scopus 로고    scopus 로고
    • Induction of innate immune genes in brain create the neurobiology of addiction
    • Crews FT, Zou J, Qin L (2011) Induction of innate immune genes in brain create the neurobiology of addiction. Brain Behav Immun 25 [Suppl 1]:S4-S12.
    • (2011) Brain Behav Immun , vol.25 , Issue.SUPPL 1
    • Crews, F.T.1    Zou, J.2    Qin, L.3
  • 12
    • 84856111959 scopus 로고    scopus 로고
    • Epigenetic treatments for cognitive impairments
    • Day JJ, Sweatt JD (2012) Epigenetic treatments for cognitive impairments. Neuropsychopharmacology 37:247-260.
    • (2012) Neuropsychopharmacology , vol.37 , pp. 247-260
    • Day, J.J.1    Sweatt, J.D.2
  • 13
    • 39549114412 scopus 로고    scopus 로고
    • GC-and AT-rich chromatin domains differ in conformation and histone modification status and are differentially modulated by Rpd3p
    • Dekker J (2007) GC-and AT-rich chromatin domains differ in conformation and histone modification status and are differentially modulated by Rpd3p. Genome Biol 8:R116.
    • (2007) Genome Biol , vol.8
    • Dekker, J.1
  • 16
    • 0025738978 scopus 로고
    • Ethanol consumption inhibits fetal DNA methylation in mice: Implications for the fetal alcohol syndrome
    • Garro AJ, McBeth DL, Lima V, Lieber CS (1991) Ethanol consumption inhibits fetal DNA methylation in mice: implications for the fetal alcohol syndrome. Alcohol Clin Exp Res 15:395-398.
    • (1991) Alcohol Clin Exp Res , vol.15 , pp. 395-398
    • Garro, A.J.1    McBeth, D.L.2    Lima, V.3    Lieber, C.S.4
  • 17
    • 36849072543 scopus 로고    scopus 로고
    • Glutamatergic substrates of drug addiction and alcoholism
    • Gass JT, Olive MF (2008) Glutamatergic substrates of drug addiction and alcoholism. Biochem Pharmacol 75:218-265.
    • (2008) Biochem Pharmacol , vol.75 , pp. 218-265
    • Gass, J.T.1    Olive, M.F.2
  • 18
    • 70350061951 scopus 로고    scopus 로고
    • Neuroscience in the era of functional genomics and systems biology
    • Geschwind DH, Konopka G (2009) Neuroscience in the era of functional genomics and systems biology. Nature 461:908-915.
    • (2009) Nature , vol.461 , pp. 908-915
    • Geschwind, D.H.1    Konopka, G.2
  • 19
    • 63049085971 scopus 로고    scopus 로고
    • New perspectives on folate transport in relation to alcoholism-induced folate malabsorption: Association with epigenome stability and cancer development
    • Hamid A, Wani NA, Kaur J (2009) New perspectives on folate transport in relation to alcoholism-induced folate malabsorption: association with epigenome stability and cancer development. FEBS J 276:2175-2191.
    • (2009) FEBS J , vol.276 , pp. 2175-2191
    • Hamid, A.1    Wani, N.A.2    Kaur, J.3
  • 20
    • 0141681163 scopus 로고    scopus 로고
    • Neuropathological alterations in alcoholic brains. Studies arising from the New South Wales Tissue Resource Centre
    • Harper C, Dixon G, Sheedy D, Garrick T (2003) Neuropathological alterations in alcoholic brains. Studies arising from the New South Wales Tissue Resource Centre. Prog Neuropsychopharmacol Biol Psychiatry 27: 951-961.
    • (2003) Prog Neuropsychopharmacol Biol Psychiatry , vol.27 , pp. 951-961
    • Harper, C.1    Dixon, G.2    Sheedy, D.3    Garrick, T.4
  • 24
    • 0037372003 scopus 로고    scopus 로고
    • Epigenetic regulation of gene expression: How the genome integrates intrinsic and environmental signals
    • Jaenisch R, Bird A (2003) Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals. Nat Genet [Suppl] 33:245-254.
    • (2003) Nat Genet , vol.33 , Issue.SUPPL , pp. 245-254
    • Jaenisch, R.1    Bird, A.2
  • 25
    • 38049107891 scopus 로고    scopus 로고
    • Mind bomb-2 is an E3 ligase that ubiquitinates the N-methyl-D-aspartate receptor NR2B subunit in a phosphorylationdependent manner
    • Jurd R, Thornton C, Wang J, Luong K, Phamluong K, Kharazia V, Gibb SL, Ron D (2008) Mind bomb-2 is an E3 ligase that ubiquitinates the N-methyl-D-aspartate receptor NR2B subunit in a phosphorylationdependent manner. J Biol Chem 283:301-310.
    • (2008) J Biol Chem , vol.283 , pp. 301-310
    • Jurd, R.1    Thornton, C.2    Wang, J.3    Luong, K.4    Phamluong, K.5    Kharazia, V.6    Gibb, S.L.7    Ron, D.8
  • 28
    • 0035816653 scopus 로고    scopus 로고
    • Regulation of the human MAT2B gene encoding the regulatory beta subunit of methionine adenosyltransferase, MAT II
    • LeGros L, Halim AB, Chamberlin ME, Geller A, Kotb M (2001) Regulation of the human MAT2B gene encoding the regulatory beta subunit of methionine adenosyltransferase, MAT II. J Biol Chem 276:24918-24924.
    • (2001) J Biol Chem , vol.276 , pp. 24918-24924
    • Legros, L.1    Halim, A.B.2    Chamberlin, M.E.3    Geller, A.4    Kotb, M.5
  • 31
    • 7544231794 scopus 로고    scopus 로고
    • Intragenic DNA methylation alters chromatin structure and elongation efficiency in mammalian cells
    • Lorincz MC, Dickerson DR, Schmitt M, Groudine M (2004) Intragenic DNA methylation alters chromatin structure and elongation efficiency in mammalian cells. Nat Struct Mol Biol 11:1068-1075.
    • (2004) Nat Struct Mol Biol , vol.11 , pp. 1068-1075
    • Lorincz, M.C.1    Dickerson, D.R.2    Schmitt, M.3    Groudine, M.4
  • 34
    • 79952582606 scopus 로고    scopus 로고
    • Cocaine dynamically regulates heterochromatin and repetitive element unsilencing in nucleus accumbens
    • Maze I, Feng J, Wilkinson MB, Sun H, Shen L, Nestler EJ (2011) Cocaine dynamically regulates heterochromatin and repetitive element unsilencing in nucleus accumbens. Proc Natl Acad Sci U S A 108:3035-3040.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 3035-3040
    • Maze, I.1    Feng, J.2    Wilkinson, M.B.3    Sun, H.4    Shen, L.5    Nestler, E.J.6
  • 35
    • 55949085986 scopus 로고    scopus 로고
    • Keeping things quiet: Roles of NuRD and Sin3 co-repressor complexes during mammalian development
    • McDonel P, Costello I, Hendrich B (2009) Keeping things quiet: roles of NuRD and Sin3 co-repressor complexes during mammalian development. Int J Biochem Cell Biol 41:108-116.
    • (2009) Int J Biochem Cell Biol , vol.41 , pp. 108-116
    • McDonel, P.1    Costello, I.2    Hendrich, B.3
  • 36
    • 55849109584 scopus 로고    scopus 로고
    • The epigenetics of rRNA genes: From molecular to chromosome biology
    • McStay B, Grummt I (2008) The epigenetics of rRNA genes: from molecular to chromosome biology. Annu Rev Cell Dev Biol 24:131-157.
    • (2008) Annu Rev Cell Dev Biol , vol.24 , pp. 131-157
    • McStay, B.1    Grummt, I.2
  • 37
    • 38949175007 scopus 로고    scopus 로고
    • A systems level analysis of transcriptional changes in Alzheimer's disease and normal aging
    • Miller JA, Oldham MC, Geschwind DH (2008) A systems level analysis of transcriptional changes in Alzheimer's disease and normal aging. J Neurosci 28:1410-1420.
    • (2008) J Neurosci , vol.28 , pp. 1410-1420
    • Miller, J.A.1    Oldham, M.C.2    Geschwind, D.H.3
  • 38
    • 77955454185 scopus 로고    scopus 로고
    • Divergence of human andmouse brain transcriptome highlights Alzheimer disease pathways
    • Miller JA, Horvath S, Geschwind DH (2010) Divergence of human andmouse brain transcriptome highlights Alzheimer disease pathways. Proc Natl Acad Sci U S A 107:12698-12703.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 12698-12703
    • Miller, J.A.1    Horvath, S.2    Geschwind, D.H.3
  • 42
    • 43649105135 scopus 로고    scopus 로고
    • Brain chromatin remodeling: A novel mechanism of alcoholism
    • Pandey SC, Ugale R, Zhang H, Tang L, Prakash A (2008) Brain chromatin remodeling: a novel mechanism of alcoholism. J Neurosci 28:3729-3737.
    • (2008) J Neurosci , vol.28 , pp. 3729-3737
    • Pandey, S.C.1    Ugale, R.2    Zhang, H.3    Tang, L.4    Prakash, A.5
  • 43
    • 62749083866 scopus 로고    scopus 로고
    • Degradation of association and projection white matter systems in alcoholism detected with quantitative fiber tracking
    • Pfefferbaum A, Rosenbloom M, Rohlfing T, Sullivan EV (2009) Degradation of association and projection white matter systems in alcoholism detected with quantitative fiber tracking. Biol Psychiatry 65:680-690.
    • (2009) Biol Psychiatry , vol.65 , pp. 680-690
    • Pfefferbaum, A.1    Rosenbloom, M.2    Rohlfing, T.3    Sullivan, E.V.4
  • 44
    • 77951097223 scopus 로고    scopus 로고
    • Amygdala transcriptome and cellular mechanisms underlying stress-enhanced fear learning in a rat model of posttraumatic stress disorder
    • Ponomarev I, Rau V, Eger EI, Harris RA, Fanselow MS (2010) Amygdala transcriptome and cellular mechanisms underlying stress-enhanced fear learning in a rat model of posttraumatic stress disorder. Neuropsychopharmacology 35:1402-1411.
    • (2010) Neuropsychopharmacology , vol.35 , pp. 1402-1411
    • Ponomarev, I.1    Rau, V.2    Eger, E.I.3    Harris, R.A.4    Fanselow, M.S.5
  • 45
    • 70350148422 scopus 로고    scopus 로고
    • Chromatin regulation in drug addiction and depression
    • Renthal W, Nestler EJ (2009) Chromatin regulation in drug addiction and depression. Dialogues Clin Neurosci 11:257-268.
    • (2009) Dialogues Clin Neurosci , vol.11 , pp. 257-268
    • Renthal, W.1    Nestler, E.J.2
  • 48
    • 33645284007 scopus 로고    scopus 로고
    • Methylation of endogenous human retroelements in health and disease
    • Schulz WA, Steinhoff C, Florl AR (2006) Methylation of endogenous human retroelements in health and disease. Curr Top Microbiol Immunol 310:211-250.
    • (2006) Curr Top Microbiol Immunol , vol.310 , pp. 211-250
    • Schulz, W.A.1    Steinhoff, C.2    Florl, A.R.3
  • 50
    • 33947303168 scopus 로고    scopus 로고
    • Transposable elements and the epigenetic regulation of the genome
    • Slotkin RK, Martienssen R (2007) Transposable elements and the epigenetic regulation of the genome. Nat Rev Genet 8:272-285.
    • (2007) Nat Rev Genet , vol.8 , pp. 272-285
    • Slotkin, R.K.1    Martienssen, R.2
  • 51
    • 67649985942 scopus 로고    scopus 로고
    • Alcoholism: A systems approach from molecular physiology to addictive behavior
    • Spanagel R (2009) Alcoholism: a systems approach from molecular physiology to addictive behavior. Physiol Rev 89:649-705.
    • (2009) Physiol Rev , vol.89 , pp. 649-705
    • Spanagel, R.1
  • 53
    • 77950669072 scopus 로고    scopus 로고
    • Coexpression network analysis of neural tissue reveals perturbations in developmental processes in schizophrenia
    • Torkamani A, Dean B, Schork NJ, Thomas EA (2010) Coexpression network analysis of neural tissue reveals perturbations in developmental processes in schizophrenia. Genome Res 20:403-412.
    • (2010) Genome Res , vol.20 , pp. 403-412
    • Torkamani, A.1    Dean, B.2    Schork, N.J.3    Thomas, E.A.4
  • 54
    • 79955886271 scopus 로고    scopus 로고
    • Genome-wide association studies of alcohol dependence and substance use disorders
    • Treutlein J, Rietschel M (2011) Genome-wide association studies of alcohol dependence and substance use disorders. Curr Psychiatry Rep 13:147-155.
    • (2011) Curr Psychiatry Rep , vol.13 , pp. 147-155
    • Treutlein, J.1    Rietschel, M.2
  • 55
    • 27744469993 scopus 로고    scopus 로고
    • Dualism of gene GC content and CpG pattern in regard to expression in the human genome: Magnitude versus breadth
    • Vinogradov AE (2005) Dualism of gene GC content and CpG pattern in regard to expression in the human genome: magnitude versus breadth. Trends Genet 21:639-643.
    • (2005) Trends Genet , vol.21 , pp. 639-643
    • Vinogradov, A.E.1
  • 56
    • 0031662164 scopus 로고    scopus 로고
    • Transcription of IAP endogenous retroviruses is constrained by cytosine methylation
    • Walsh CP, Chaillet JR, Bestor TH (1998) Transcription of IAP endogenous retroviruses is constrained by cytosine methylation. Nat Genet 20:116-117.
    • (1998) Nat Genet , vol.20 , pp. 116-117
    • Walsh, C.P.1    Chaillet, J.R.2    Bestor, T.H.3
  • 57
    • 0043093697 scopus 로고    scopus 로고
    • Transposable elements: Targets for early nutritional effects on epigenetic gene regulation
    • Waterland RA, Jirtle RL (2003) Transposable elements: targets for early nutritional effects on epigenetic gene regulation. Mol Cell Biol 23: 5293-5300.
    • (2003) Mol Cell Biol , vol.23 , pp. 5293-5300
    • Waterland, R.A.1    Jirtle, R.L.2
  • 61
    • 79955799262 scopus 로고    scopus 로고
    • Clinical and pathological features of alcohol-related brain damage
    • Zahr NM, Kaufman KL, Harper CG (2011) Clinical and pathological features of alcohol-related brain damage. Nat Rev Neurol 7:284-294.
    • (2011) Nat Rev Neurol , vol.7 , pp. 284-294
    • Zahr, N.M.1    Kaufman, K.L.2    Harper, C.G.3
  • 62
    • 23944458138 scopus 로고    scopus 로고
    • A general framework for weighted gene coexpression network analysis
    • Article17
    • Zhang B, Horvath S (2005) A general framework for weighted gene coexpression network analysis. Stat Appl Genet Mol Biol 4:Article17.
    • (2005) Stat Appl Genet Mol Biol , pp. 4
    • Zhang, B.1    Horvath, S.2
  • 64
    • 79955583858 scopus 로고    scopus 로고
    • Substance-specific and shared transcription and epigenetic changes in the human hippocampus chronically exposed to cocaine and alcohol
    • Zhou Z, Yuan Q, Mash DC, Goldman D (2011) Substance-specific and shared transcription and epigenetic changes in the human hippocampus chronically exposed to cocaine and alcohol. Proc Natl Acad Sci U S A 108:6626-6631.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 6626-6631
    • Zhou, Z.1    Yuan, Q.2    Mash, D.C.3    Goldman, D.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.