-
1
-
-
0035261381
-
Genomic strategies to identify mammalian regulatory sequences
-
Pennacchio LA, Rubin EM, (2001) Genomic strategies to identify mammalian regulatory sequences. Nature Reviews Genetics 2: 100-109.
-
(2001)
Nature Reviews Genetics
, vol.2
, pp. 100-109
-
-
Pennacchio, L.A.1
Rubin, E.M.2
-
2
-
-
0018782641
-
Hierarchic organization of domains in globular proteins
-
Rose GD, (1979) Hierarchic organization of domains in globular proteins. Journal of Molecular Biology 134: 447-470.
-
(1979)
Journal of Molecular Biology
, vol.134
, pp. 447-470
-
-
Rose, G.D.1
-
4
-
-
39149110563
-
The genome of the choanoagellate monosiga brevicollis and the origin of metazoans
-
King N, Westbrook MJ, Young SL, Kuo A, Abedin M, et al. (2008) The genome of the choanoagellate monosiga brevicollis and the origin of metazoans. Nature 451: 783-788.
-
(2008)
Nature
, vol.451
, pp. 783-788
-
-
King, N.1
Westbrook, M.J.2
Young, S.L.3
Kuo, A.4
Abedin, M.5
-
5
-
-
50049092481
-
The trichoplax genome and the nature of placozoans
-
Srivastava M, Begovic E, Chapman J, Putnam NH, Hellsten U, et al. (2008) The trichoplax genome and the nature of placozoans. Nature 454: 955-960.
-
(2008)
Nature
, vol.454
, pp. 955-960
-
-
Srivastava, M.1
Begovic, E.2
Chapman, J.3
Putnam, N.H.4
Hellsten, U.5
-
6
-
-
0035812694
-
Protein structure prediction and structural genomics
-
Baker D, Sali A, (2001) Protein structure prediction and structural genomics. Science 294: 93-96.
-
(2001)
Science
, vol.294
, pp. 93-96
-
-
Baker, D.1
Sali, A.2
-
7
-
-
0033757806
-
The protein data bank and the challenge of structural genomics
-
Berman HM, Bhat TN, Bourne PE, Feng Z, Gilliland G, et al. (2000) The protein data bank and the challenge of structural genomics. Nature Structural & Molecular Biology 7.
-
(2000)
Nature Structural & Molecular Biology
, vol.7
-
-
Berman, H.M.1
Bhat, T.N.2
Bourne, P.E.3
Feng, Z.4
Gilliland, G.5
-
8
-
-
0033578684
-
Protein secondary structure prediction based on position-specific scoring matrices
-
Jones DT, (1999) Protein secondary structure prediction based on position-specific scoring matrices. Journal of Molecular Biology 292: 195-202.
-
(1999)
Journal of Molecular Biology
, vol.292
, pp. 195-202
-
-
Jones, D.T.1
-
9
-
-
0141738785
-
Secondary structure prediction with support vector machines
-
Ward JJ, McGuffin LJ, Buxton BF, Jones DT, (2003) Secondary structure prediction with support vector machines. Bioinformatics 19: 1650-1655.
-
(2003)
Bioinformatics
, vol.19
, pp. 1650-1655
-
-
Ward, J.J.1
McGuffin, L.J.2
Buxton, B.F.3
Jones, D.T.4
-
10
-
-
34247247779
-
Improved residue contact prediction using support vector machines and a large feature set
-
Cheng J, Baldi P, (2007) Improved residue contact prediction using support vector machines and a large feature set. BMC Bioinformatics 8: 1-9.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 1-9
-
-
Cheng, J.1
Baldi, P.2
-
11
-
-
0032438987
-
Hidden markov models for detecting remote protein homologies
-
Karplus K, Barrett C, Hughey R, (1998) Hidden markov models for detecting remote protein homologies. Bioinformatics 14: 846-56.
-
(1998)
Bioinformatics
, vol.14
, pp. 846-856
-
-
Karplus, K.1
Barrett, C.2
Hughey, R.3
-
12
-
-
36749014942
-
Assessment of predictions submitted for the CASP7 domain prediction category
-
Tress M, Cheng J, Baldi P, Joo K, Lee J, et al. (2007) Assessment of predictions submitted for the CASP7 domain prediction category. PROTEINS 69: 137-151.
-
(2007)
PROTEINS
, vol.69
, pp. 137-151
-
-
Tress, M.1
Cheng, J.2
Baldi, P.3
Joo, K.4
Lee, J.5
-
13
-
-
0031874788
-
Divclus: an automatic method in the geanfammer package that finds homologous domains in single-and multi-domain proteins
-
Park J, Teichmann S, (1998) Divclus: an automatic method in the geanfammer package that finds homologous domains in single-and multi-domain proteins. Bioinformatics 14: 144-150.
-
(1998)
Bioinformatics
, vol.14
, pp. 144-150
-
-
Park, J.1
Teichmann, S.2
-
14
-
-
0028218683
-
Modular arrangement of proteins as inferred from analysis of homology
-
Sonnhammer EL, Kahn D, (1994) Modular arrangement of proteins as inferred from analysis of homology. Protein Science 3: 482-492.
-
(1994)
Protein Science
, vol.3
, pp. 482-492
-
-
Sonnhammer, E.L.1
Kahn, D.2
-
16
-
-
37649028224
-
Finding and evaluating community structure in networks
-
Newman MEJ, Girvan M, (2004) Finding and evaluating community structure in networks. Physical Review E 69: 026113.
-
(2004)
Physical Review E
, vol.69
, pp. 026113
-
-
Newman, M.E.J.1
Girvan, M.2
-
17
-
-
20444504323
-
Uncovering the overlapping community structure ofcomplex networks in nature and society
-
Palla G, Derenyi I, Farkas I, Vicsek T, (2005) Uncovering the overlapping community structure ofcomplex networks in nature and society. Nature 435: 814-818.
-
(2005)
Nature
, vol.435
, pp. 814-818
-
-
Palla, G.1
Derenyi, I.2
Farkas, I.3
Vicsek, T.4
-
18
-
-
61649123108
-
Sequential algorithm for fast clique percolation
-
Kumpula JM, Kivela M, Kaski K, Saramaki J, (2008) Sequential algorithm for fast clique percolation. Physical Review E 78: 026109.
-
(2008)
Physical Review E
, vol.78
, pp. 026109
-
-
Kumpula, J.M.1
Kivela, M.2
Kaski, K.3
Saramaki, J.4
-
19
-
-
77955490196
-
The amphimedon queenslandica genome and the evolution of animal complexity
-
Srivastava M, Simakov O, Chapman J, Fahey B, Gauthier M, et al. (2010) The amphimedon queenslandica genome and the evolution of animal complexity. Nature 466: 720-726.
-
(2010)
Nature
, vol.466
, pp. 720-726
-
-
Srivastava, M.1
Simakov, O.2
Chapman, J.3
Fahey, B.4
Gauthier, M.5
-
20
-
-
77950080387
-
The dynamic genome of hydra
-
Chapman J, Kirkness E, Simakov O, Hampson S, Mitros T, et al. (2010) The dynamic genome of hydra. Nature 464: 592-596.
-
(2010)
Nature
, vol.464
, pp. 592-596
-
-
Chapman, J.1
Kirkness, E.2
Simakov, O.3
Hampson, S.4
Mitros, T.5
-
21
-
-
34447300950
-
Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization
-
Putnam N, Srivastava M, Hellsten U, Dirks B, Chapman J, et al. (2007) Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization. Science 317: 86-94.
-
(2007)
Science
, vol.317
, pp. 86-94
-
-
Putnam, N.1
Srivastava, M.2
Hellsten, U.3
Dirks, B.4
Chapman, J.5
-
22
-
-
33750995860
-
The genome of the sea urchin strongylocentrotus purpuratus
-
Sodergren E, Weinstock G, Davidson E, Cameron R, Gibbs R, et al. (2006) The genome of the sea urchin strongylocentrotus purpuratus. Science 314: 941-952.
-
(2006)
Science
, vol.314
, pp. 941-952
-
-
Sodergren, E.1
Weinstock, G.2
Davidson, E.3
Cameron, R.4
Gibbs, R.5
-
23
-
-
66749182204
-
Sequencing and de novo analysis of a coral larval transcriptome using 454 gsx
-
Meyer E, Aglyamova G, Wang S, Buchanan-Carter J, Abrego D, et al. (2009) Sequencing and de novo analysis of a coral larval transcriptome using 454 gsx. BMC Genomics 10: 219.
-
(2009)
BMC Genomics
, vol.10
, pp. 219
-
-
Meyer, E.1
Aglyamova, G.2
Wang, S.3
Buchanan-Carter, J.4
Abrego, D.5
-
24
-
-
0035166973
-
The interpro database, an integrated documentation resource for protein families, domains and functional sites
-
Apweiler R, Attwood T, Bairoch A, Bateman A, Birney E, et al. (2001) The interpro database, an integrated documentation resource for protein families, domains and functional sites. Nucleic Acids Research 29: 37-41.
-
(2001)
Nucleic Acids Research
, vol.29
, pp. 37-41
-
-
Apweiler, R.1
Attwood, T.2
Bairoch, A.3
Bateman, A.4
Birney, E.5
-
25
-
-
0036202921
-
Patternhunter: faster and more sensitive homology search
-
Ma B, Tromp J, Li M, (2002) Patternhunter: faster and more sensitive homology search. Bioinformatics 18: 440-445.
-
(2002)
Bioinformatics
, vol.18
, pp. 440-445
-
-
Ma, B.1
Tromp, J.2
Li, M.3
-
26
-
-
4544349273
-
Patternhunter ii: highly sensitive and fast homology search
-
Li M, Ma B, Kisman D, Tromp J, (2004) Patternhunter ii: highly sensitive and fast homology search. Journal of Bioinformatics and Computational Biology 2: 417-439.
-
(2004)
Journal of Bioinformatics and Computational Biology
, vol.2
, pp. 417-439
-
-
Li, M.1
Ma, B.2
Kisman, D.3
Tromp, J.4
-
27
-
-
0036529479
-
An efficient algorithm for large-scale detection of protein families
-
Enright A, Van Dongen S, Ouzounis C, (2002) An efficient algorithm for large-scale detection of protein families. Nucleic Acids Research 30: 1575-1584.
-
(2002)
Nucleic Acids Research
, vol.30
, pp. 1575-1584
-
-
Enright, A.1
van Dongen, S.2
Ouzounis, C.3
-
29
-
-
0038624558
-
Nods: intracellular proteins involved in inammation and apoptosis
-
Inohara N, Nuñez G, (2003) Nods: intracellular proteins involved in inammation and apoptosis. Nature Reviews Immunology 3: 371-382.
-
(2003)
Nature Reviews Immunology
, vol.3
, pp. 371-382
-
-
Inohara, N.1
Nuñez, G.2
-
30
-
-
2942749999
-
Pynod, a novel apaf-1/ced4-like protein is an inhibitor of asc and caspase-1
-
Wang Y, Hasegawa M, Imamura R, Kinoshita T, Kondo C, et al. (2004) Pynod, a novel apaf-1/ced4-like protein is an inhibitor of asc and caspase-1. International immunology 16: 777-786.
-
(2004)
International Immunology
, vol.16
, pp. 777-786
-
-
Wang, Y.1
Hasegawa, M.2
Imamura, R.3
Kinoshita, T.4
Kondo, C.5
-
31
-
-
0042121237
-
Multiple sequence alignment with the clustal series of programs
-
Chenna R, Sugawara H, Koike T, Lopez R, Gibson T, et al. (2003) Multiple sequence alignment with the clustal series of programs. Nucleic Acids Research 31: 3497-3500.
-
(2003)
Nucleic Acids Research
, vol.31
, pp. 3497-3500
-
-
Chenna, R.1
Sugawara, H.2
Koike, T.3
Lopez, R.4
Gibson, T.5
-
32
-
-
0034237205
-
Organellar genes: why do they end up in the nucleus?
-
Blanchard J, Lynch M, (2000) Organellar genes: why do they end up in the nucleus? Trends in Genetics 16: 315-320.
-
(2000)
Trends in Genetics
, vol.16
, pp. 315-320
-
-
Blanchard, J.1
Lynch, M.2
|