PatternHunter: Faster and more sensitive homology search

Bioinformatics

Volumn 18, Issue 3, 2002, Pages 440-445

  Ma, Bin ^a   Tromp, John ^b   Li, Ming ^c,d  

^a UNIVERSITY OF WESTERN ONTARIO   (Canada)

^b Bioinformatics Solutions Inc   (Canada)

^c UNIVERSITY OF WATERLOO   (Canada)

^d University of California   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; CONTROLLED STUDY; DEVICE; GENOMICS; HUMAN CHROMOSOME; INTERNET; PRIORITY JOURNAL; PROTEOMICS; SENSITIVITY AND SPECIFICITY; SEQUENCE HOMOLOGY; VELOCITY;

EID: 0036202921     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/18.3.440     Document Type: Article

References (17)

1. Basic local alignment search tool
2. Gapped blast and psi-blast: A new generation of protein database search programs
3. Efficient large-scale sequence comparison by locality-sensitive hashing
4. Finding motifs using random projections
5. q-gram based database searching using a suffix array
6. FLASH: Fast look-up algorithm for string homology
7. Alignment of whole genomes
8. A time-efficient, linear-space local similarityalgorithm
9. Approximate nearest neighbors: Towards removing the curse of dimensionality
10. Initial sequencing and analysis of the human genome
11. Rapid and sensitive protein similarity searches
12. REPuter-fast computation of maximal repeats in complete genomes
13. Blast 2 sequences-a new tool for comparing protein and nucleotide sequences
14. The sequence of the human genome
15. A greedy algorithm for aligning DNA sequences