GGDEF domain is homologous to adenylyl cyclase

Proteins: Structure, Function and Genetics

Volumn 42, Issue 2, 2001, Pages 210-216

  Pei, Jimin ^b   Grishin, Nick V ^a,b  

^a UNIVERSITY OF TEXAS SOUTHWESTERN MEDICAL CENTER   (United States)

^b UNIVERSITY OF TEXAS SOUTHWESTERN MEDICAL CENTER   (United States)

Author keywords

Bacterial signaling pathways; Diguanylate cyclase; Domain architecture; Ferredoxin fold; Structure prediction

Indexed keywords

ADENYLATE CYCLASE; FERREDOXIN;

ACETOBACTER; BACTERIAL GENETICS; CONFERENCE PAPER; CYCLIZATION; EVOLUTION; GENOME; PRIORITY JOURNAL; PROKARYOTE; PROTEIN DOMAIN; PROTEIN FOLDING; PROTEIN METABOLISM; PROTEIN STRUCTURE; SEQUENCE HOMOLOGY; SIGNAL TRANSDUCTION; STRUCTURE ANALYSIS;

ACETOBACTER; ADENYLATE CYCLASE; AMINO ACID MOTIFS; AMINO ACID SEQUENCE; ANIMALS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PHOSPHORUS-OXYGEN LYASES; PROTEIN CONFORMATION; PROTEIN STRUCTURE, TERTIARY; SACCHAROMYCES CEREVISIAE; SEQUENCE HOMOLOGY, AMINO ACID; SIGNAL TRANSDUCTION;

EID: 0035254950     PISSN: 08873585     EISSN: None     Source Type: Journal    
DOI: 10.1002/1097-0134(20010201)42:2<210::AID-PROT80>3.0.CO;2-8     Document Type: Conference Paper

References (58)

1. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
2. Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins
3. Hidden Markov models
4. GenTHREADER: An efficient and reliable protein fold recognition method for genomic sequences
5. Distribution of protein folds in the three superkingdoms of life
6. A structural census of the current population of protein sequences
7. A structural census of genomes: Comparing bacterial, eukaryotic, and archaeal genomes in terms of protein structure
8. Structure of the adenylyl cyclase catalytic core
9. Crystal structure of the catalytic domains of adenylyl cyclase in a complex with Gsalpha. GTPgammaS
10. Beyond complete genomes: From sequence to structure and function
11. A genomic perspective on protein families
12. The COG database: A tool for genome-scale analysis of protein functions and evolution
13. Identification of a novel response regulator required for the swarmer-to-stalked-cell transition in Caulobacter crescentus
14. Cell cycle-dependent degradation of a flagellar motor component requires a novel-type response regulator
15. Three cdg operons control cellular turn-over of cyclic di-GMP in Acetobacter xylinum: Genetic organization and occurrence of conserved domains in isoenzymes
16. SMART: A web-based tool for the study of genetically mobile domains
17. SMART, a simple modular architecture research tool: Identification of signaling domains
18. The Pfam protein families database
19. Iterated profile searches with PSI-BLAST - A tool for discovery in protein databases
20. Amino acid substitution matrices from protein blocks
21. Non-globular domains in protein sequences: Automated segmentation using complexity measures
22. Analysis of compositionally biased regions in sequence databases
23. SEALS: A system for easy analysis of lots of sequences
24. Hybrid fold recognition: Combining sequence derived properties with evolutionary information
25. TOPITS: Threading one-dimensional predictions into three-dimensional structures
26. Protein fold recognition by prediction-based threading
27. Protein fold recognition using sequence-derived predictions
28. A 3D-1D substitution matrix for protein fold recognition that includes predicted secondary structure of the sequence
29. Catalytic mechanism of the adenylyl and guanylyl cyclases: Modeling and mutational analysis
30. SCOP: A structural classification of proteins database
31. SCOP: A structural classification of proteins database for the investigation of sequences and structures
32. Structure of the arginine repressor from Bacillus stearothermophilus
33. Structure of the oligomerization and L-arginine binding domain of the arginine repressor of Escherichia coli
34. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
35. PHD - An automatic mail server for protein secondary structure prediction
36. Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 Å resolution
37. The mechanism of action of T7 DNA polymerase
38. A polymerase I palm in adenylyl cyclase?
39. The structure, catalytic mechanism and regulation of adenylyl cyclase
40. Two-metal-ion catalysis in adenylyl cyclase
41. Complexity and diversity of mammalian adenylyl cyclases
42. Two amino acid substitutions convert a guanylyl cyclase, RetGC-1, into an adenylyl cyclase
43. Two eye guanylyl cyclases are expressed in the same photoreceptor cells and form homomers in preference to heteromers
44. Identification of sequences mediating guanylyl cyclase dimerization
45. Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods
46. The crystal structure of glutarnine-binding protein from Escherichia coli
47. PAS domain S-boxes in Archaea, Bacteria and sensors for oxygen and redox
48. Response regulators of bacterial signal transduction systems: Selective domain shuffling during evolution
49. The cytoplasmic helical linker domain of receptor histidine kinase and methyl-accepting proteins is common to many prokaryotic signalling proteins
50. The GAF domain: An evolutionary link between diverse phototransducing proteins
51. A repeating amino acid motif in CDC23 defines a family of proteins and a new relationship among genes required for mitosis and RNA synthesis
52. The FHA domain is a modular phosphopeptide recognition motif
53. The cyclic diguanylic acid regulatory system of cellulose synthesis in Acetobacter xylinum. Chemical synthesis and biological activity of cyclic nucleotide dimer, trimer, and phosphothioate derivatives
54. Cellulose biosynthesis and function in bacteria
55. Structural and putative regulatory genes involved in cellulose synthesis in Rhizobium leguminosarum bv. trifolii
56. Attachment of the adhesive holdfast organelle to the cellular stalk of Caulobacter crescentus
57. Regulation of cellular differentiation in Caulobacter crescentus
58. An extensively modified version of MolScript that includes greatly enhanced coloring capabilities