-
1
-
-
22644438480
-
C-di-GMP: The dawning of a novel bacterial signalling system
-
Römling U, Gomelsky M, Galperin MY. 2005. C-di-GMP: the dawning of a novel bacterial signalling system. Mol. Microbiol. 57:629-639.
-
(2005)
Mol. Microbiol
, vol.57
, pp. 629-639
-
-
Römling, U.1
Gomelsky, M.2
Galperin, M.Y.3
-
2
-
-
70349274104
-
Structural and mechanistic determinants of c-di-GMP signalling
-
Schirmer T, Jenal U. 2009. Structural and mechanistic determinants of c-di-GMP signalling. Nat. Rev. Microbiol. 7:724-735.
-
(2009)
Nat. Rev. Microbiol
, vol.7
, pp. 724-735
-
-
Schirmer, T.1
Jenal, U.2
-
3
-
-
0023090935
-
Regulation of cellulose synthesis in Acetobacter xyli-num by cyclic diguanylic acid
-
Ross P, et al. 1987. Regulation of cellulose synthesis in Acetobacter xyli-num by cyclic diguanylic acid. Nature 325:279-281.
-
(1987)
Nature
, vol.325
, pp. 279-281
-
-
Ross, P.1
-
4
-
-
30344469912
-
PilZ domain is part of the bacterial c-di-GMP binding protein
-
Amikam D, Galperin MY. 2006. PilZ domain is part of the bacterial c-di-GMP binding protein. Bioinformatics 22:3-6.
-
(2006)
Bioinformatics
, vol.22
, pp. 3-6
-
-
Amikam, D.1
Galperin, M.Y.2
-
5
-
-
33646249963
-
Cell-cell signaling in Xanthomonas campestris involves an HD-GYP domain protein that functions in cyclic di-GMP turnover
-
Ryan RP, et al. 2006. Cell-cell signaling in Xanthomonas campestris involves an HD-GYP domain protein that functions in cyclic di-GMP turnover. Proc. Natl. Acad. Sci. U. S. A. 103:6712-6717.
-
(2006)
Proc. Natl. Acad. Sci. U. S. A
, vol.103
, pp. 6712-6717
-
-
Ryan, R.P.1
-
6
-
-
0001353754
-
Bdellovibrio bacteriovorus gen. et sp. n., a predatory, ectoparasitic, and bacteriolytic microorganism
-
Stolp H, Starr MP. 1963. Bdellovibrio bacteriovorus gen. et sp. n., a predatory, ectoparasitic, and bacteriolytic microorganism. Antonie Van Leeu-wenhoek 29:217-248.
-
(1963)
Antonie Van Leeu-wenhoek
, vol.29
, pp. 217-248
-
-
Stolp, H.1
Starr, M.P.2
-
7
-
-
0026758727
-
Bdellovibrio host dependence: The search for signal molecules and genes that regulate the intraperiplasmic growth cycle
-
Thomashow MF, Cotter TW. 1992. Bdellovibrio host dependence: the search for signal molecules and genes that regulate the intraperiplasmic growth cycle. J. Bacteriol. 174:5767-5771.
-
(1992)
J. Bacteriol
-
-
Thomashow, M.F.1
Cotter, T.W.2
-
8
-
-
9144236808
-
A predator unmasked: Life cycle of Bdellovibrio bacteriovorus from a genomic perspective
-
Rendulic S, et al. 2004. A predator unmasked: life cycle of Bdellovibrio bacteriovorus from a genomic perspective. Science 303:689-692.
-
(2004)
Science
, vol.303
, pp. 689-692
-
-
Rendulic, S.1
-
9
-
-
33645287547
-
Characterizing the flagellar filament and the role of motility in bacterial prey-penetration by Bdellovibrio bacteriovorus
-
Lambert C, et al. 2006. Characterizing the flagellar filament and the role of motility in bacterial prey-penetration by Bdellovibrio bacteriovorus. Mol. Microbiol. 60:274-286.
-
(2006)
Mol. Microbiol
, vol.60
, pp. 274-286
-
-
Lambert, C.1
-
10
-
-
77950547731
-
Cell-cell signal-dependent dynamic interactions between HD-GYP and GGDEF domain proteins mediate virulence in Xanthomonas campestris
-
Ryan RP, et al. 2010. Cell-cell signal-dependent dynamic interactions between HD-GYP and GGDEF domain proteins mediate virulence in Xanthomonas campestris. Proc. Natl. Acad. Sci. U. S. A. 107:5989-5994.
-
(2010)
Proc. Natl. Acad. Sci. U. S. A
, vol.107
, pp. 5989-5994
-
-
Ryan, R.P.1
-
11
-
-
21844443829
-
Exo84 and Sec5 are competitive regulatory Sec6/8 effectors to the RalA GTPase
-
Jin R, et al. 2005. Exo84 and Sec5 are competitive regulatory Sec6/8 effectors to the RalA GTPase. EMBO J. 24:2064-2074.
-
(2005)
EMBO J
, vol.24
, pp. 2064-2074
-
-
Jin, R.1
-
12
-
-
34547659282
-
Structure of BeF3-modified response regulator PleD: Implications for diguanylate cyclase activation, catalysis, and feedback inhibition
-
Wassmann P, et al. 2007. Structure of BeF3-modified response regulator PleD: implications for diguanylate cyclase activation, catalysis, and feedback inhibition. Structure 15:915-927.
-
(2007)
Structure
, vol.15
, pp. 915-927
-
-
Wassmann, P.1
-
13
-
-
41249100715
-
Structural insight into the mechanism of substrate specificity and catalytic activity of an HD-domain phosphohydrolase: The 5=-deoxyribonucleotidase YfbR from Escherichia coli
-
Zimmerman MD, Proudfoot M, Yakunin A, Minor W. 2008. Structural insight into the mechanism of substrate specificity and catalytic activity of an HD-domain phosphohydrolase: the 5=-deoxyribonucleotidase YfbR from Escherichia coli. J. Mol. Biol. 378:215-226.
-
(2008)
J. Mol. Biol
, vol.378
, pp. 215-226
-
-
Zimmerman, M.D.1
Proudfoot, M.2
Yakunin, A.3
Minor, W.4
-
15
-
-
33750074424
-
Crystal structure of a substrate complex of myo-inositol oxygenase, a di-iron oxygenase with a key role in inositol metabolism
-
Brown PM, et al. 2006. Crystal structure of a substrate complex of myo-inositol oxygenase, a di-iron oxygenase with a key role in inositol metabolism. Proc. Natl. Acad. Sci. U. S. A. 103:15032-15037.
-
(2006)
Proc. Natl. Acad. Sci. U. S. A
, vol.103
, pp. 15032-15037
-
-
Brown, P.M.1
-
16
-
-
79961113805
-
Analysis of the HD-GYP domain cyclic dimeric GMP phosphodiesterase reveals a role in motility and the enzootic life cycle of Borrelia burgdorferi
-
Sultan SZ, et al. 2011. Analysis of the HD-GYP domain cyclic dimeric GMP phosphodiesterase reveals a role in motility and the enzootic life cycle of Borrelia burgdorferi. Infect. Immun. 79:3273-3283.
-
(2011)
Infect. Immun
, vol.79
, pp. 3273-3283
-
-
Sultan, S.Z.1
-
17
-
-
78249278151
-
Intermolecular interactions between HD-GYP and GGDEF domain proteins mediate virulence-related signal transduction in Xanthomonas campestris
-
Ryan RP, DOW JM, Intermolecular interactions between HD-GYP and GGDEF domain proteins mediate virulence-related signal transduction in Xanthomonas campestris. 2010 Virulence. 1:404-408.
-
(2010)
Virulence
, vol.1
, pp. 404-408
-
-
Ryan, R.P.1
Dow, J.M.2
-
18
-
-
48549093368
-
MSDmotif: Exploring protein sites and motifs
-
Golovin A, Henrick K. 2008. MSDmotif: exploring protein sites and motifs. BMC Bioinform. 9:312.
-
(2008)
BMC Bioinform
, vol.9
, pp. 312
-
-
Golovin, A.1
Henrick, K.2
-
19
-
-
33749180794
-
The HD-GYP domain of RpfG mediates a direct linkage between the Rpf quorum-sensing pathway and a subset of digua-nylate cyclase proteins in the phytopathogen Xanthomonas axonopodis pv citri
-
Andrade MO, et al. 2006. The HD-GYP domain of RpfG mediates a direct linkage between the Rpf quorum-sensing pathway and a subset of digua-nylate cyclase proteins in the phytopathogen Xanthomonas axonopodis pv citri. Mol. Microbiol. 62:537-551.
-
(2006)
Mol. Microbiol
, vol.62
, pp. 537-551
-
-
Andrade, M.O.1
-
20
-
-
67649295467
-
Structure and mechanism of a bacterial light-regulated cyclic nucleotide phosphodiesterase
-
Barends TR, et al. 2009. Structure and mechanism of a bacterial light-regulated cyclic nucleotide phosphodiesterase. Nature 459:1015-1018.
-
(2009)
Nature
, vol.459
, pp. 1015-1018
-
-
Barends, T.R.1
-
21
-
-
77956921553
-
Structural insight into the mechanism of c-di-GMP hydrolysis by EAL domain phosphodiesterases
-
Tchigvintsev A, et al. 2010. Structural insight into the mechanism of c-di-GMP hydrolysis by EAL domain phosphodiesterases. J. Mol. Biol. 402:524-538.
-
(2010)
J. Mol. Biol
, vol.402
, pp. 524-538
-
-
Tchigvintsev, A.1
-
22
-
-
0242401840
-
The crystal structure of AMP-bound PDE4 suggests a mechanism for phosphodiesterase catalysis
-
Huai Q, Colicelli J, Ke H. 2003. The crystal structure of AMP-bound PDE4 suggests a mechanism for phosphodiesterase catalysis. Biochemistry 42:13220-13226.
-
(2003)
Biochemistry
, vol.42
, pp. 13220-13226
-
-
Huai, Q.1
Colicelli, J.2
Ke, H.3
-
23
-
-
33645021327
-
RF cloning: A restriction-free method for inserting target genes into plasmids
-
van den Ent F, Löwe J. 2006. RF cloning: a restriction-free method for inserting target genes into plasmids. J. Biochem. Biophys. Methods 67: 67-74.
-
(2006)
J. Biochem. Biophys. Methods
, vol.67
, pp. 67-74
-
-
van den Ent, F.1
Löwe, J.2
-
24
-
-
79151469567
-
Assessment of the mobilizable vector plasmids pSUP202 and pSUP404.2 as genetic tools for the predatory bacterium Bdellovibrio bacteriovorus
-
Roschanski N, Strauch E. 2011. Assessment of the mobilizable vector plasmids pSUP202 and pSUP404.2 as genetic tools for the predatory bacterium Bdellovibrio bacteriovorus. Curr. Microbiol. 62:589-596.
-
(2011)
Curr. Microbiol
, vol.62
, pp. 589-596
-
-
Roschanski, N.1
Strauch, E.2
-
25
-
-
34347379743
-
Predation by Bdellovibrio bac-teriovorus HD100 requires type IV pili
-
Evans KJ, Lambert C, Sockett RE. 2007. Predation by Bdellovibrio bac-teriovorus HD100 requires type IV pili. J. Bacteriol. 189:4850-4859.
-
(2007)
J. Bacteriol
, vol.189
, pp. 4850-4859
-
-
Evans, K.J.1
Lambert, C.2
Sockett, R.E.3
-
28
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
Collaborative Computational Project, Number 4
-
Collaborative Computational Project, Number 4. 1994. The CCP4 suite: programs for protein crystallography. Acta Crystallogr. D Biol. Crystal-logr. 50:760-763.
-
(1994)
Acta Crystallogr. D Biol. Crystal-logr
, vol.50
, pp. 760-763
-
-
-
29
-
-
49649085631
-
Automated structure solution with the PHENIX suite
-
Zwart PH, et al. 2008. Automated structure solution with the PHENIX suite. Methods Mol. Biol. 426:419-435.
-
(2008)
Methods Mol. Biol
, vol.426
, pp. 419-435
-
-
Zwart, P.H.1
-
31
-
-
34447508216
-
Phaser crystallographic software
-
McCoy AJ, et al. 2007. Phaser crystallographic software. J. Appl. Crystal-logr. 40:658-674.
-
(2007)
J. Appl. Crystal-logr
, vol.40
, pp. 658-674
-
-
McCoy, A.J.1
-
32
-
-
4444221565
-
UCSF Chimera-a visualization system for exploratory research and analysis
-
Pettersen EF, et al. 2004. UCSF Chimera-a visualization system for exploratory research and analysis. J. Comput. Chem. 25:1605-1612.
-
(2004)
J. Comput. Chem
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
-
33
-
-
0034623005
-
T-Coffee: A novel method for fast and accurate multiple sequence alignment
-
Notredame C, Higgins DG, Heringa J. 2000. T-Coffee: a novel method for fast and accurate multiple sequence alignment. J. Mol. Biol. 302: 205-217.
-
(2000)
J. Mol. Biol
, vol.302
, pp. 205-217
-
-
Notredame, C.1
Higgins, D.G.2
Heringa, J.3
-
34
-
-
0032961270
-
ESPript: Analysis of multiple sequence alignments in PostScript
-
Gouet P, Courcelle E, Stuart DI, Métoz F. 1999. ESPript: analysis of multiple sequence alignments in PostScript. Bioinformatics 15:305-308.
-
(1999)
Bioinformatics
, vol.15
, pp. 305-308
-
-
Gouet, P.1
Courcelle, E.2
Stuart, D.I.3
Métoz, F.4
|