Using default constraints of the spindle assembly checkpoint to estimate the associated chemical rates

BMC Biophysics

Volumn 5, Issue 1, 2012, Pages

  Dao Duc, Khanh ^a   Holcman, David ^a  

^a PSL RESEARCH UNIVERSITY   (France)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84862213550     PISSN: 20461682     EISSN: None     Source Type: Journal    
DOI: 10.1186/2046-1682-5-1     Document Type: Article

References (37)

1. Uhlmann F, Lottspeich F, Nasmyth K. Nature. Sister-chromatid separation at anaphase onset is promoted by cleavage of the cohesin subunit Scc1 1999, 400(6739):19-21.
2. Nilsson J, Yekezare M, Minshull J, Pines J. The APC/C maintains the spindle assembly checkpoint by targeting Cdc20 for destruction. Nature Cell Biology 2008, 10:1411-1420. 10.1038/ncb1799, 2635557, 18997788.
3. Passmore L, Booth R, Vnien-Bryan C, Ludtke S, Fioretto C, Johnson L, Chiu W, Barford D. Structural Analysis of the Anaphase-Promoting Complex Reveals Multiple Active Sites and Insights into Polyubiquitylation. Molecular Cell 2005, 20:6.
4. Sear RP, Howard M. Modeling dual pathways for the metazoan spindle assembly checkpoint. Proc Natl Acad Sci USA 2006, 103(45):16758-63. 10.1073/pnas.0603174103, 1636528, 17065324.
5. Sironi L, et al. Crystal structure of the tetrameric Mad1-Mad2 core complex: implications of a safety belt binding mechanism for the spindle checkpoint. The EMBO journal 2002, 21:24962506.
6. Vigneron S, Prieto S, Bernis C, Labbe JC, Castro A, Lorca T. Kinetochore Localization of Spindle Checkpoint Proteins: Who Controls Whom?. Molecular Biology of the Cell 2004, 15:45844596.
7. Mapelli M, Massimiliano L, Santaguida S, Musacchio A. The mad2 conformational dimer: structure and implications for the spindle assembly checkpoint. Cell 2007, 131:730743.
8. Luo X, Tang Z, Rizo J, Yu H. The Mad2 spindle checkpoint protein undergoes similar major conformational changes upon binding to either Mad1 or Cdc20. Molecular cell 2002, 9:5971.
9. Tang Z, Bharadwaj R, Li B, Yu H. Mad2-Independent inhibition of APCCdc20 by the mitotic checkpoint protein BubR1. Developmental cell 2001, 1:227237.
10. Fang G. Checkpoint protein BubR1 acts synergisti-cally with Mad2 to inhibit anaphase-promoting complex. Molecular biology of the cell 2002, 13:755766.
11. Doncic A, Ben-Jacob E, Barkai. Evaluating putative mechanisms of the mitotic spindle checkpoint. PNAS 2005, 102(18):6332-7. 10.1073/pnas.0409142102, 1088361, 15851663.
12. Doncic A, Ben-Jacob E, Einav S, Barkai1N. Reverse Engineering of the Spindle Assembly Checkpoint. PLoS One 2009, 4(8).
13. Ibrahim B, Diekmann S, Schmitt E, Dittrich P. In-Silico Modeling of the Mitotic Spindle Assembly Checkpoint. PLoS ONE 2008, 3(2).
14. Mistry H, MacCallum D, Jackson R, Chaplain M, Davidson F. Modeling the temporal evolution of the spindle assembly checkpoint and role of Aurora B kinase. PNAS 2008, 105(51).
15. Ciliberto A, Shah JV. A quantitative systems view of the spindle assembly checkpoint. The EMBO Journal 2009, 28:2162-2173. 10.1038/emboj.2009.186, 2722251, 19629044.
16. Lohel M, Ibrahim B, Diekmann S, Dittrich P. The role of localization in the operation of the mitotic spindle assembly checkpoint. Cell Cycle 2009, 8(16):2650-60. Epub 2009 Aug 29, 10.4161/cc.8.16.9383, 19657233.
17. Simonetta M, Manzoni R, Mosca R, Mapelli M, Mas-similiano L, Vink M, Novak B, Musacchio A, Ciliberto A. The influence of catalysis on mad2 activation dynamics. PLoS Biol 2009, 7(1):e10. 10.1371/journal.pbio.1000010, 2621267, 19143472.
18. Holcman D, Schuss Z. Stochastic chemical reactions in microdomains. J Chem Phys 2005, 122(11):114710. 10.1063/1.1849155, 15836246.
19. Wilkinson DJ. Stochastic modelling for quantitative description of heterogeneous biological systems. Nature Reviews Genetics 2009, 10(2):122-133. 10.1038/nrg2509, 19139763.
20. Dao Duc K, Holcman D. Threshold activation for stochastic chemical reactions. Phys Rev E 2010, 81:041107.
21. Howell BJ, Moree B, Farrar EM, Stewart S, Fang G, Salmon ED. Spindle checkpoint protein dynamics at kinetochores in living cells. Curr Biol 2004, 14(11):953-64. 2004, 10.1016/j.cub.2004.05.053, 15182668.
22. Pan J, Chen R-H. Spindle checkpoint regulates Cdc20p stability in Saccharomyces cerevisiae. Genes & Dev 2004, 18:1439-1451. 10.1101/gad.1184204, 22299190.
23. Sczaniecka M, Feoktistova A, May KM, Chen JS, Blyth J, Gould KL, Hardwick KG. The Spindle Checkpoint Functions of Mad3 and Mad2 depend on a Mad3 KEN Box-mediated Interaction with Cdc20-Anaphase-promoting Complex (APC/C). J Biol Chem 2008, 283(34):23039-23047. 10.1074/jbc.M803594200, 2516979, 18556659.
24. Burton JL, Solomon MJ. Mad3p, a pseudosubstrate inhibitor of APCCdc20 in the spindle assembly checkpoint. Genes Dev 2007, 21(6):655-67. 10.1101/gad.1511107, 1820940, 17369399.
25. Wang Z, Shah JV, Berns MW, Cleveland DW. In vivo quantitative studies of dynamic intracellu-lar processes using fluorescence correlation spectroscopy. Biophysical Journal 2006, 91.
26. Teichner A, Eytan E, Sitry-Shevah D, Miniowitz-Shemtov S, Dumin E, Gromis J, Hershko A. p31comet Promotes disassembly of the mitotic checkpoint complex in an ATP-dependent process. Proc Natl Acad Sci USA 2011, 108(8):3187-92. Epub 2011 Feb 7, 10.1073/pnas.1100023108, 3044357, 21300909.
27. Holcman D, Schuss Z. "Escape through a small opening: receptor trafficking in a synaptic membrane". J of Statistical Physics 2004, 117(5/6):191-230.
28. Singer A, Schuss Z, Holcman D, Eisenberg B. Narrow Escape I. J Stat Phys 2006, 122(3):437-463.
29. Schuss Z, Singer A, Holcman D. The narrow escape problem for diffusion in cellular microdomains. Proc Natl Acad Sci USA 2007, 104:1609816103.
30. Kleinrock L. Queueing systems. 1976, Wiley.
31. Rieder CL, Schultz A, Cole R, Sluder G. Anaphase onset in vertebrate somatic cells is controlled by a checkpoint that monitors sister kinetochore attachment to the spindle. J Cell Biol 1994, 127(5):13011310.
32. Meraldi P, Draviam VM, Sorger PK. Timing and Checkpoints in the Regulation of Mitotic Progression. Developmental Cell 2004, 7:4560.
33. Opper M, Sanguinetti G. Variational inference for Markov jump processes. Advances in Neural Information Processing Systems 2008, 1105-1112. MIT Press.
34. Shah JV, Botvinick E, Bonday Z, Furnari F, Berns M, Cleveland DW. Dynamics of centromere and kinetochore proteins; implications for checkpoint signaling and silencing. Curr Biol 2004, 14:942952.
35. Wassmann K, Niault T, Maro B. Metaphase I arrest upon activation of the Mad2-dependent spindle checkpoint in mouse ovocytes. Current Biology 2003, 13(18):1596-1608. 10.1016/j.cub.2003.08.052, 13678590.
36. Ibrahim B, Schmidt E, Dittrich P, Diekmann S. MCC Assembly is not Combined With Full Cdc20 Sequestering. Biosystems 2009, 95(1):35-50. 10.1016/j.biosystems.2008.06.007, 18675311.
37. Herzog F, Primorac I, Dube P, Lenart P, Sander B, Mechtler K, Stark H, Peters JM. Structure of the anaphase-promoting complex/cyclosome interacting with a mitotic checkpoint complex. Science 2009, 323(5920):1477-81. 10.1126/science.1163300, 2989460, 19286556.