Involvement of the AtoSCDAEB regulon in the high molecular weight poly-(R)-3-hydroxybutyrate biosynthesis in phaCAB + Escherichia coli

Metabolic Engineering

Volumn 14, Issue 4, 2012, Pages 354-365

  Theodorou, Evaggelos C ^a   Theodorou, Marina C ^a   Kyriakidis, Dimitrios A ^a  

^a ARISTOTLE UNIVERSITY OF THESSALONIKI   (Greece)

Author keywords

Oxidation; AtoDAEB; AtoSC; Fatty acid biosynthesis; Poly (R) 3 hydroxybutyrate; Two component system

Indexed keywords

ATODAEB; ATOSC; FATTY ACID BIOSYNTHESIS; POLY--3-HYDROXYBUTYRATE; TWO COMPONENT SYSTEMS;

BIODEGRADATION; BIOMOLECULES; BIOSYNTHESIS; ESCHERICHIA COLI; FATTY ACIDS; GLUCOSE; METABOLISM; MOLECULAR WEIGHT; ORGANIC ACIDS;

BIOCHEMISTRY;

ACETOACETIC ACID; ACRYLIC ACID; CERULENIN; EXTRACHROMOSOMAL DNA; POLY(3 HYDROXYBUTYRIC ACID); POLYHYDROXYALKANOIC ACID; PROTEASOME;

ARTICLE; BACTERIAL METABOLISM; BACTERIAL STRAIN; BIOACCUMULATION; BIOSYNTHESIS; CONTROLLED STUDY; CUPRIAVIDUS NECATOR; ESCHERICHIA COLI; FATTY ACID OXIDATION; FATTY ACID SYNTHESIS; GENE DELETION; GENE EXPRESSION; NONHUMAN; OPERON; PHENOTYPE; PRIORITY JOURNAL; REDUCTION; REGULON; UPREGULATION;

ACETOACETATES; ACRYLATES; CERULENIN; CUPRIAVIDUS NECATOR; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; FATTY ACIDS; GENE DELETION; GENETIC LOCI; GLUCOSE; HYDROXYBUTYRATES; OPERON; POLYESTERS; PROTEIN KINASES; REGULON; UP-REGULATION;

CUPRIAVIDUS NECATOR; ESCHERICHIA COLI;

EID: 84862160176     PISSN: 10967176     EISSN: 10967184     Source Type: Journal    
DOI: 10.1016/j.ymben.2012.03.010     Document Type: Article

References (55)

1. Brandl H., Gross R.A., Lenz R.W., Fuller R.C. Pseudomonas oleovorans as a source of poly(Β-hydroxyalkanoates) for potential application as biodegradable polyesters. Appl. Environ. Microbiol. 1988, 54:1977-1982.
2. Canellakis E.S., Paterakis A.A., Huang S.C., Panagiotidis C.A., Kyriakidis D.A. Identification, cloning, and nucleotide sequencing of the ornithine decarboxylase antizyme gene of Escherichia coli. Proc. Natl. Acad. Sci. USA 1993, 90:7129-7133.
3. Castañeda M., Guzmán G., Moreno S., Espín G. The GacS sensor kinase regulates alginate and poly-Β-hydroxybutyrate production in Azotobacter vinelandii. J. Bacteriol. 2000, 182:2624-2628.
4. Dennis D., McCoy M., Stangl A., Valentin H.E., Wu Z. Formation of poly (3-hydroxybutyrate-co-3-hydroxyhexanoate) by PHA synthase from Ralstonia eutropha. J. Biotechnol. 1998, 64:177-186.
5. Fidler S., Dennis D. Polyhydroxyalkanoate production in recombinant Escherichia coli. FEMS Microbiol. Rev. 1992, 103:231-236.
6. Fujita Y., Matsuoka H., Hirookam K. Regulation of fatty acid metabolism in bacteria. Mol. Microbiol. 2007, 66:829-839.
7. Fukui T., Shiomi N., Doi Y. Expression and characterization of (R)-specific enoyl coenzyme A hydratase involved in polyhydroxyalkanoate biosynthesis by Aeromonas caviae. J. Bacteriol. 1998, 180:667-673.
8. Fukui T., Yokomizo S., Kobayashi G., Doi Y. Co-expression of polyhydroxyalkanoate synthase and (R)-enoyl-CoA hydratase genes from Aeromonas caviae establishes copolyester biosynthesis pathway in Escherichia coli. FEMS Microbiol. Lett. 1999, 170:69-75.
9. Funabashi H., Kawaguchi A., Tomoda H., Omura S., Okuda S., Iwasaki S. Binding site of cerulenin in fatty acid synthetase. J. Biochem. 1989, 105:751-755.
10. García Vésconi E., Sciara M.I., Castelli M.E. Two component systems in the spatial program of bacteria. Curr. Opin. Microbiol. 2010, 13:210-218.
11. Grage K., Jahns A.C., Parlane N., Palanisamy R., Rasiah I.A., Atwood J.A., Rehm B.H.A. Bacterial polyhydroxyalkanoate granules: biogenesis, structure, and potential use as nano-/micro-beads in biotechnological and biomedical applications. Biomacromol 2009, 10:660-669.
12. Griffo G., Oppenheim A.B., Gottesman M.E. Repression of the lambda pcin promoter by integrative host factor. J. Mol. Biol. 1989, 209:55-64.
13. 13C nuclear magnetic resonance studies of Pseudomonas putida fatty acid metabolic routes involved in poly(3-hydroxyalkanoate) synthesis. J. Bacteriol. 1995, 176:1661-1666.
14. Jung, Y.K., Lee, S.Y., Tam, T.T., 2011. Plastics from bacteria: natural functions and applications, towards systems metabolic engineering of PHA producers. In: Chen, G.-Q. (Ed.), Microbiology Monographs, vol. 14. Springer-Verlag, Berlin, Heidelberg.
15. Karr D.B., Waters J.K., Emerich D.W. Analysis of poly-Β-hydroxybutyrate in Rhizobium japonicum bacteroids by ion-exclusion high-pressure liquid chromatography and UV detection. Appl. Environ. Microbiol. 1983, 46:1339-1344.
16. Kessler B., Witholt B. Factors involved in the regulatory network of polyhydroxyalkanoate metabolism. J. Biotechnol. 2001, 86:97-104.
17. Kichise T., Taguchi S., Doi Y. Enhanced accumulation and changed monomer composition in polyhydroxyalkanoate (PHA) copolyester by in vitro evolution of Aeromonas caviae PHA synthase. Appl. Environ. Microbiol. 2002, 68:2411-2419.
18. Klinke S., Ren Q., Witholt B., Kessler B. Production of medium-chain-length poly(3-hydroxyalkanoates) from gluconate by recombinant Escherichia coli. Appl. Environ. Microbiol. 1999, 65:540-548.
19. Kyriakidis D.A., Theodorou M.C., Filippou P.S., Kyriakidis K.D., Tiligada E. Effect of histamine on the signal transduction of the AtoS-AtoC two component system and involvement in poly-(R)-3-hydroxybutyrate biosynthesis in Escherichia coli. Amino Acids 2008, 35:45-52.
20. Kyriakidis D.A., Tiligada E. Signal transduction and adaptive regulation through bacterial two-component systems: the Escherichia coli AtoSC paradigm. Amino Acids 2009, 37:443-458.
21. Li R., Zhang H., Qi Q. The production of polyhydroxyalkanoates in recombinant Escherichia coli. Bioresour. Technol. 2007, 98:2313-2320.
22. Li Z.-J., Shi Z.-Y., Jian J., Guo Y.-Y., Wu Q., Chen G.-Q. Production of poly(3-hydroxybutyrate-co-4-hydroxybutyrate) from unrelated carbon sources by metabolically engineered Escherichia coli. Metab. Eng. 2010, 12:352-359.
23. Liu S.J., Steinbüchel A. A novel genetically engineered pathway for synthesis of poly(hydroxyalkanoic acids) in Escherichia coli. Appl. Environ. Microbiol. 2000, 66:739-743.
24. Madison L.L., Huisman G.S. Metabolic engineering of poly(3-hydroxyalkanoates): from DNA to plastic. Microbiol. Mol. Biol. Rev. 1999, 63:21-53.
25. Matsumoto K., Takase K., Yamamoto Y., Doi Y., Taguchi S. Chimeric enzyme composed of polyhydroxyalkanoate (PHA) synthases from Ralstonia eutropha and Aeromonas caviae enhances production of PHAs in recombinant Escherichia coli. Biomacromolecules 2009, 10:682-685.
26. Mendesa M.V., Tunca S., Antona N., Recio E., Sola-Landa A., Aparicio J.F., Martín J.F. The two-component phoR-phoP system of Streptomyces natalensis: inactivation or deletion of phoP reduces the negative phosphate regulation of pimaricin biosynthesis. Metab. Eng. 2007, 9:217-227.
27. Miller G.L. Use of dinitrosalicylic acid reagent for determination of reducing sugar. Anal. Chem. 1959, 31:426-428.
28. Oshima T., Aiba H., Masuda Y., Kanaya S., Masahito S., Wanner B.L., Mori H., Mizuno T. Transcriptome analysis of all two component regulatory system mutants of Escherichia coli K-12. Mol. Microbiol. 2002, 46:281-291.
29. Park S.J., Ahn W.S., Green P.R., Lee S.Y. Biosynthesis of poly(3-hydroxybutyrate-co-3-hydroxyvalerate-co-3-hydroxyhexanoate) by metabolically engineered Escherichia coli strains. Biotechnol. Bioeng. 2001, 74:81-86.
30. Park S.J., Choi J.I., Lee S.Y. Engineering of Escherichia coli fatty acid metabolism for the production of polyhydroxyalkanoates. Enzyme Microb. Technol. 2004, 36:579-588.
31. Park S.J., Lee S.Y. Identification and characterization of a new enoyl coenzyme A hydratase involved in biosynthesis of medium-chain-length polyhydroxyalkanoates in recombinant Escherichia coli. J. Bacteriol. 2003, 185:5391-5397.
32. Peplinski K., Ehrenreich A., Döring C., Bömeke M., Reinecke F., Hutmacher C., Steinbüchel A. Genome-wide transcriptome analyses of the 'Knallgas' bacterium Ralstonia eutropha H16 with regard to polyhydroxyalkanoate metabolism. Microbiology 2010, 156:2136-2152.
33. Peralta-Gil M., Segura D., Guzmán J., Servin-González L., Espín G. Expression of the Azotobacter vinelandii poly-Β-hydroxybutyrate biosynthetic phbBAC operon is driven by two overlapping promoters and is dependent on the transcriptional activator abr. J. Bacteriol. 2002, 184:5672-5677.
34. Prieto M.A., Kellerhals M.B., Bozzato G.B., Radnovik D., Witholt B., Kessler B. Engineering of stable recombinant bacteria for production of chiral medium-chain-length poly-3-hydroxyalkanoates. Appl. Environ. Microbiol. 1999, 65:3265-3271.
35. Qi Q.S., Steinbüchel A., Rehm B.H.A. Metabolic routing towards polyhydroxyalkanoic acid synthesis in recombinant Escherichia coli (fadR): inhibition of fatty acid L-oxidation by acrylic acid. FEMS Microbiol. Lett. 1998, 167:89-94.
36. Rehm B.H.A. Polyester synthases: natural catalysts for plastics. Biochem. J. 2003, 376:15-33.
37. Reusch R.N., Shabalin O., Crumbaugh A., Wagner R., Schröder O., Wurm R. Posttranslational modification of E. coli histone-like protein H-NS and bovine histones by short-chain poly-(R)-3-hydroxybutyrate (cPHB). FEBS Lett. 2002, 527:319-322.
38. + Escherichia coli. Appl. Environ. Microbiol. 1995, 61:2487-2492.
39. Sambrook J., Fitsch E.F., Maniatis T. Molecular Cloning: A Laboratory Manual 1989, Cold Spring Harbor Press, Cold Spring Harbor.
40. Schembri M.A., Bayly R.C., Davies J.K. Phosphate concentration regulates transcription of the Acinetobacter polyhydroxyalkanoic acid biosynthetic genes. J. Bacteriol. 1995, 177:4501-4507.
41. Schubert P., Steinbüchel A., Schlegel H.G. Cloning of the Alcaligenes eutrophus poly-b-hydroxybutyrate synthetic pathway and synthesis of P(3HB) in Escherichia coli. J. Bacteriol. 1988, 170:5837-5847.
42. Slater S., Gallaher T., Dennis D. Production of poly-(3-hydroxybutyrate-co-3-hydroxyvalerate) in a recombinant Escherichia coli strain. Appl. Environ. Microbiol. 1992, 58:1089-1094.
43. Spiekermann R., Rehm B.H.A., Karlscheuer R., Baumeister D., Steinbüchel A. A sensitive, viable-colony staining method using Nile Red for direct screening of bacteria that accumulate polyhydroxyalkanoic acids and other lipid storage compounds. Arch. Microbiol. 1999, 171:73-80.
44. Sun J., Peng X., Impe J.V., Vanderleyden J. The ntrB and ntrC genes are involved in the regulation of poly-3-hydroxybutyrate biosynthesis by ammonia in Azospirillum brasilense Sp7. Appl. Environ. Microbiol. 2000, 66:113-117.
45. Theodorou E.C., Theodorou M.C., Kyriakidis D.A. AtoSC two-component system is involved in cPHB biosynthesis through fatty acid metabolism in E. coli. Biochim. Biophys. Acta 2011, 1810:561-568.
46. Theodorou E.C., Theodorou M.C., Samali M.N., Kyriakidis D.A. Activation of the AtoSC two component system in the absence of the AtoC N-terminal receiver domain in E. coli. Amino Acids 2011, 40:421-430.
47. Theodorou M.C., Panagiotidis C.A., Panagiotidis C.H., Pantazaki A.A., Kyriakidis D.A. Involvement of the AtoS-AtoC signal transduction system in poly-(R)-3-hydroxybutyrate biosynthesis in Escherichia coli. Biochim. Biophys. Acta 2006, 1760:896-906.
48. Theodorou, M.C., Theodorou, E.C., Kyriakidis, D.A., 2011c. Involvement of AtoSC two-component system in Escherichia coli flagellar regulon. Amino Acids 10.1007/s00726-011-1140-7.
49. Theodorou M.C., Theodorou E.C., Panagiotidis C.A., Kyriakidis D.A. Spermidine triggering effect to the signal transduction through the AtoS-AtoC/Az two component system in Escherichia coli. Biochim. Biophys. Acta 2007, 1770:1104-1114.
50. 2+ transients affect poly-(R)-3-hydroxybutyrate regulation by the AtoS-AtoC system in E. coli. Biochem. J. 2009, 417:667-672.
51. Tsao C.-Y., Hooshangi S., Wu H.-C., Valdes J.J., Bentley W.E. Autonomous induction of recombinant proteins by minimally rewiring native quorum sensing regulon of E. coli. Metab. Eng. 2010, 12:291-297.
52. Tyo K.E.J., Fischer C.R., Simeon F., Stephanopoulos G. Analysis of polyhydroxybutyrate flux limitations by systematic genetic and metabolic perturbations. Metab. Eng. 2010, 12:187-195.
53. Xian M., Fuerst M.M., Shabalin Y., Reusch R.N. Sorting signal of Escherichia coli OmpA is modified by oligo-(R)-3-hydroxybutyrate. Biochim. Biophys. Acta 2007, 1768:2660-2666.
54. Yim K.S., Lee S.Y., Chang H.N. Synthesis of poly-(3-hydroxybutyrate-co-3-hydroxyvalerate) by recombinant Escherichia coli. Biotechnol. Bioeng. 1996, 49:495-503.
55. Zhou Q., Shi Z.-Y., Meng D.-C., Wu Q., Chen J.-C., Chen G.-Q. Production of 3-hydroxypropionate homopolymer and poly(3-hydroxypropionate-co-4-hydroxybutyrate) copolymer by recombinant Escherichia coli. Metab. Eng. 2011, 13:777-785.