Activation of the AtoSC two-component system in the absence of the AtoC N-terminal receiver domain in E. coli

Amino Acids

Volumn 40, Issue 2, 2011, Pages 421-430

  Theodorou, Evaggelos C ^a   Theodorou, Marina C ^a   Samali, Margarita N ^a   Kyriakidis, Dimitrios A ^a,b  

^a ARISTOTLE UNIVERSITY OF THESSALONIKI   (Greece)

^b INSTITUTE OF BIOLOGY   (Greece)

Author keywords

atoDAEB; AtoSC; Poly (R) 3 hydroxybutyrate; Truncated AtoC; Two component system

Indexed keywords

ACETIC ACID; ACETOACETIC ACID; ACETYL COENZYME A; ATOC PROTEIN; ATOS PROTEIN; BACTERIAL PROTEIN; BUTYRIC ACID; POLY(3 HYDROXYBUTYRIC ACID); SPERMIDINE; UNCLASSIFIED DRUG;

AMINO TERMINAL SEQUENCE; ARTICLE; BIOLOGICAL ACTIVITY; BIOSYNTHESIS; CELL GROWTH; CONTROLLED STUDY; ESCHERICHIA COLI; GENE EXPRESSION; GROWTH INHIBITION; NONHUMAN; OPERON; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN FUNCTION; PROTEIN PROTEIN INTERACTION; SIGNAL TRANSDUCTION; TRANSCRIPTION REGULATION; WILD TYPE;

DNA-BINDING PROTEINS; ENZYME ACTIVATION; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; GENE EXPRESSION REGULATION, BACTERIAL; HYDROXYBUTYRATES; OPERON; POLYESTERS; PROTEIN KINASES; PROTEIN STRUCTURE, TERTIARY;

EID: 78751571318     PISSN: 09394451     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00726-010-0652-x     Document Type: Article

References (43)

1. M Arifuzzaman M Maeda A Itoh K Nishikata C Takita R Saito T Ara K Nakahigashi H-C Huang A Hirai K Tsuzuki S Nakamura M Altaf-Ul-Amin T Oshima T Baba N Yamamoto T Kawamura T Ioka-Nakamichi M Kitagawa M Tomita S Kanaya C Wada H Mori 2006 Large-scale identification of protein-protein interaction of Escherichia coli K-12 Genome Res 16 686 691 1:CAS:528:DC%2BD28XkslCgs7s%3D 10.1101/gr.4527806 16606699
2. MC Assumpção EM de Souza MG Yates F de Oliveira Pedrosa EM Benelli 2007 Purification and characterisation of Azospirillum brasilense N-truncated NtrX protein Prot Express Purif 53 302 308 10.1016/j.pep.2007.01.003 (Pubitemid 46453210)
3. S Austin R Dixon 1992 The procaryotic enhancer binding protein NTRC has an ATPase activity which is phosphorylation and DNA dependent EMBO J 11 2219 2228 1:CAS:528:DyaK38Xks1Ciurc%3D 1534752
4. S Balaji M Madan Babu L Aravind 2007 Interplay between network structures, regulatory modes and sensing mechanisms of transcription factors in the transcriptional regulatory network of E. coli J Mol Biol 372 1108 1122 1:CAS:528:DC%2BD2sXhtVWht7rP 10.1016/j.jmb.2007.06.084 17706247 (Pubitemid 47368344)
5. MM Bradford 1976 A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein binding Anal Biochem 72 248 254 1:CAS:528:DyaE28XksVehtrY%3D 10.1016/0003-2697(76)90527-3 942051
6. ES Canellakis AA Paterakis SC Huang CA Panagiotidis DA Kyriakidis 1993 Identification, cloning, and nucleotide sequencing of the ornithine decarboxylase antizyme gene of Escherichia coli Proc Natl Acad Sci USA 90 7129 7133 1:CAS:528:DyaK3sXms1ekt74%3D 10.1073/pnas.90.15.7129 8346225
7. Clark DP, Cronan JE Jr (1996) Two-carbon compounds and fatty acids as carbon sources. In: Neidhardt FC (ed) Escherichia coli and Salmonella typhimurium (Cellular and Molecular Biology). American Society of Microbiology, Washington DC
8. A Delgado JL Ramos 1994 Genetic evidence for activation of the positive transcriptional regulator XylR, a member of the NtrC family of regulators by effector binding J Biol Chem 269 8059 8062 1:CAS:528:DyaK2cXjtFOis70%3D 8132529
9. M Drummond J Walmsley C Kennedy 1996 Expression from the nifB promoter of Azotobacter vinelandii can be activated by NifA, VnfA, or AnfA transcriptional activators J Bacteriol 178 788 792 1:CAS:528:DyaK28XnsFWjtA%3D%3D 8550514
10. PS Filippou LD Kasemian CA Panagiotidis DA Kyriakidis 2008 Functional characterization of the histidine kinase of the E. coli two-component signal transduction system AtoS-AtoC Biochim Biophys Acta 1780 1023 1031 1:CAS:528:DC%2BD1cXoslOht70%3D 18534200
11. Y Flashner DS Weiss J Keener S Kustu 1995 Constitutive forms of the enhancer-binding protein NtrC: evidence that essential oligomerization determinants lie in the central activation domain J Mol Biol 249 700 713 1:CAS:528:DyaK2MXmsFKrtLw%3D 10.1006/jmbi.1995.0330 7602583
12. MY Galperin 2006 Structural classification of bacterial response regulators: diversity of output domains and domain combinations J Bacteriol 188 4169 4182 1:CAS:528:DC%2BD28XmtV2htbg%3D 10.1128/JB.01887-05 16740923 (Pubitemid 43865736)
13. R Gao TR Mack AM Stock 2008 Bacterial response regulators: versatile regulatory strategies from common domains Trends Biochem Sci 32 225 234 10.1016/j.tibs.2007.03.002
14. G Griffo AB Oppenheim ME Gottesman 1989 Repression of the lambda pcin promoter by integrative host factor J Mol Biol 209 55 64 1:CAS:528: DyaL1MXlvVyntbs%3D 10.1016/0022-2836(89)90169-1 2530356 (Pubitemid 19237807)
15. AI Grigoroudis CA Panagiotidis EE Lioliou M Vlassi DA Kyriakidis 2007 Mutagenesis and 3D-modeling studies of the AtoS-AtoC system: Altering the N-terminal AtoC domain mediates differential activities on phosphorylation, ATPase and DNA-binding in Escherichia coli Biochim Biophys Acta 1770 1248 1258 1:CAS:528:DC%2BD2sXnsFymsLc%3D 17537579
16. A Haldimann BL Wanner 2001 Conditional-replication, integration, excision and retrieval plasmid-host systems for gene structure-function studies of bacteria J Bacteriol 183 6384 6393 1:CAS:528:DC%2BD3MXnsl2gsr0%3D 10.1128/JB.183.21.6384-6393.2001 11591683 (Pubitemid 34059412)
17. JS Heller WF Fong ES Canellakis 1976 Induction of a protein inhibitor of ornithine decarboxylase by the end products of its reaction Proc Natl Acad Sci USA 73 1858 1862 1:CAS:528:DyaE28XksFyltbc%3D 10.1073/pnas.73.6.1858 1064859
18. 54-dependent transcriptional activator FhlA from Escherichia coli J Bacteriol 177 2798 2803 1:CAS:528:DyaK2MXls1Sksr0%3D 7751289
19. R Huang RN Reusch 1996 Poly(3-hydroxybutyrate) is associated with specific proteins in the cytoplasm and membranes of Escherichia coli J Biol Chem 271 22196 22202 1:CAS:528:DyaK28XlsFKnur0%3D 10.1074/jbc.271.36.22196 8703033 (Pubitemid 26303853)
20. DB Karr JK Waters DW Emerich 1983 Analysis of poly-β-hydroxybutyrate in Rhizobium japonicum bacteroids by ion-exclusion high-pressure liquid chromatography and UV detection Appl Environ Microbiol 46 1339 1344 1:CAS:528:DyaL2cXksl2gtQ%3D%3D 16346443
21. B Kessler B Witholt 2001 Factors involved in the regulatory network of polyhydroxyalkanoate metabolism J Biotechnol 86 97 104 1:CAS:528: DC%2BD3MXhs1ertbc%3D 10.1016/S0168-1656(00)00404-1 11245898 (Pubitemid 32195451)
22. DA Kyriakidis E Tiligada 2009 Signal transduction and adaptive regulation through bacterial two-component systems: the Escherichia coli AtoSC paradigm Amino Acids 37 443 458 1:CAS:528:DC%2BD1MXhtVaru73N 10.1007/s00726-009-0241-z 19198978
23. DA Kyriakidis MC Theodorou PS Filippou KD Kyriakidis E Tiligada 2008 Effect of histamine on the signal transduction of the AtoS-AtoC two component system and involvement in poly-(R)-3-hydroxybutyrate biosynthesis in Escherichia coli Amino acids 35 45 52 1:CAS:528:DC%2BD1cXmslWjt74%3D 10.1007/s00726-007- 0635-8 18235991
24. JH Lee D Scholl T Nixon TR Hoover 1994 Constitutive ATP hydrolysis and transcription activation by a stable, truncated form of Rhizobium meliloti DCTD, a σ54-dependent transcriptional activator J Biol Chem 269 20401 20409 1:CAS:528:DyaK2cXmt1enurs%3D 8051135
25. S Lejona ME Castelli ML Cabeza LJ Kenney EG Véscovi FC Soncini 2004 PhoP can activate its target genes in a PhoQ-independent manner J Bacteriol 186 2476 2480 1:CAS:528:DC%2BD2cXjsV2isrs%3D 10.1128/JB.186.8.2476-2480.2004 15060051 (Pubitemid 38451851)
26. EE Lioliou EP Mimitou AI Grigoroudis CH Panagiotidis CA Panagiotidis DA Kyriakidis 2005 Phosphorylation activity of the response regulator of the two-component signal transduction system AtoS-AtoC/Az in E. coli Biochim Biophys Acta 1725 257 268 1:CAS:528:DC%2BD2MXhtVKjsLfI 16153782
27. Miller H (ed) (1992) Cold Spring Harbor Laboratory. A short course in bacterial genetics. Cold Spring Harbor Laboratory press, Cold Spring Harbor, New York
28. LC Ng CL Poh V Shingler 1995 Aromatic effector activation of the NtrC-like transcriptional regulator PhhR limits the catabolic potential of the (methyl)phenol degradative pathway it controls J Bacteriol 177 1485 1490 1:CAS:528:DyaK2MXktlGisL8%3D 7883704
29. T Oshima H Aiba Y Masuda S Kanaya S Masahito BL Wanner H Mori T Mizuno 2002 Transcriptome analysis of all two component regulatory system mutants of Escherichia coli K-12 Mol Microbiol 46 281 291 1:CAS:528:DC%2BD38XotFShsL8%3D 10.1046/j.1365-2958.2002.03170.x 12366850 (Pubitemid 35231964)
30. 54-dependent genes in Escherichia coli Microbiol Mol Biol Rev 65 422 444 1:CAS:528:DC%2BD3MXnt12nurY%3D 10.1128/MMBR.65.3.422-444. 2001 11528004 (Pubitemid 32881714)
31. Sambrook J, Fitsch EF, Maniatis T (eds) (1989) Molecular cloning: a laboratory manual. Cold Spring Harbor, New York
32. F Schirmer S Hert W Hillen 1997 Expression, inducer spectrum, domain structure, and function of MopR, the regulator of phenol degradation in Acinetobacter calcoaceticus NCIB8250 J Bacteriol 179 1329 1336 1:CAS:528:DyaK2sXhtFOqt7g%3D 9023219
33. WT Self A Hasona KT Shanmugam 2001 N-terminal truncations in the FhlA protein result in formate- and MoeA-independent expression of the hyc (formate hydrogenlyase) operon of Escherichia coli Microbiol 147 3093 3104 1:CAS:528:DC%2BD3MXos1ejtb4%3D (Pubitemid 33076997)
34. 54-dependent regulators: derepression as a control mechanism Mol Microbiol 19 409 416 1:CAS:528:DyaK28Xht1ShtL0%3D 10.1046/j.1365-2958.1996.388920.x 8830233
35. S Tagushi A Maehara K Takase M Nakahara H Nakamura Y Doi 2001 Analysis of mutational effects of a polyhydroxybutyrate (PHB) polymerase on bacterial PHB accumulation using an in vivo assay system FEMS Microbiol Lett 198 65 71 10.1111/j.1574-6968.2001.tb10620.x
36. MC Theodorou CA Panagiotidis CH Panagiotidis AA Pantazaki DA Kyriakidis 2006 Involvement of the AtoS-AtoC signal transduction system in poly-(R)-3-hydroxybutyrate biosynthesis in Escherichia coli Biochim Biophys Acta 1760 896 906 1:CAS:528:DC%2BD28XltlKiu7w%3D 16564134
37. MC Theodorou EC Theodorou CA Panagiotidis DA Kyriakidis 2007 Spermidine triggering effect to the signal transduction through the AtoS-AtoC/Az two component system in Escherichia coli Biochim Biophys Acta 1770 1104 1114 1:CAS:528:DC%2BD2sXnsFyms70%3D 17475408
38. 2+ transients affect poly-(R)-3-hydroxybutyrate regulation by the AtoS-AtoC system in E. coli Biochem J 417 667 672 1:CAS:528:DC%2BD1MXlvFOhtw%3D%3D 10.1042/BJ20081169 18855762
39. IM Verstraete M Débarbouille A Klier G Rapoport 1994 Interactions of wild-type and truncated LevR of Bacillus subtilis with the upstream activating sequence of the levanase operon J Mol Biol 241 178 192 10.1006/jmbi.1994.1487 (Pubitemid 24263424)
40. M Xian MM Fuerst Y Shabalin RN Reusch 2007 Sorting signal of Escherichia coli OmpA is modified by oligo-(R)-3-hydroxybutyrate Biochim Biophys Acta 1768 2660 2666 1:CAS:528:DC%2BD2sXht12gurfN 10.1016/j.bbamem.2007.06.019 17659252 (Pubitemid 350060861)
41. K Yamamoto K Hirao T Oshima H Aiba R Utsumi A Ishihama 2005 Functional characterization in vitro of all two-component signal transduction systems from Escherichia coli J Biol Chem 280 1448 1456 1:CAS:528:DC%2BD2MXitFCktg%3D%3D 10.1074/jbc.M410104200 15522865
42. Yang Y-L, Liao JC (2005) Determination of functional interactions among signalling pathways in Escherichia coli K-12. Metabol Eng 7:280-290
43. XF Yang Y Ji BL Schneider L Reitzer 2004 Phosphorylation-independent dimer-dimer interactions by the enhancer-binding activator NtrC of Escherichia coli: a third function for the C-terminal domain J Biol Chem 279 36708 36714 1:CAS:528:DC%2BD2cXmvFCmsL0%3D 10.1074/jbc.M405205200 15208307 (Pubitemid 39129017)