-
1
-
-
27744593757
-
The mechanism of intein-mediated protein splicing: Variations on a theme
-
Mills KV, Perler FB, (2005) The mechanism of intein-mediated protein splicing: Variations on a theme. Protein and Peptide Letters 12: 751-755.
-
(2005)
Protein and Peptide Letters
, vol.12
, pp. 751-755
-
-
Mills, K.V.1
Perler, F.B.2
-
2
-
-
0033782899
-
Protein splicing and related forms of protein autoprocessing
-
Paulus H, (2000) Protein splicing and related forms of protein autoprocessing. Annual Review of Biochemistry 69: 447-496.
-
(2000)
Annual Review of Biochemistry
, vol.69
, pp. 447-496
-
-
Paulus, H.1
-
3
-
-
33748551323
-
Protein splicing in cis and in trans
-
Saleh L, Perler FB, (2006) Protein splicing in cis and in trans. Chemical Record 6: 183-193.
-
(2006)
Chemical Record
, vol.6
, pp. 183-193
-
-
Saleh, L.1
Perler, F.B.2
-
4
-
-
3042742569
-
Temperature-sensitive control of protein activity by conditionally splicing inteins
-
Zeidler MP, Tan C, Bellaiche Y, Cherry S, Hader S, et al. (2004) Temperature-sensitive control of protein activity by conditionally splicing inteins. Nature Biotechnology 22: 871-876.
-
(2004)
Nature Biotechnology
, vol.22
, pp. 871-876
-
-
Zeidler, M.P.1
Tan, C.2
Bellaiche, Y.3
Cherry, S.4
Hader, S.5
-
5
-
-
41449091908
-
Activation of protein splicing with light in yeast
-
Tyszkiewicz AB, Muir TW, (2008) Activation of protein splicing with light in yeast. Nature Methods 5: 303-305.
-
(2008)
Nature Methods
, vol.5
, pp. 303-305
-
-
Tyszkiewicz, A.B.1
Muir, T.W.2
-
6
-
-
0037036791
-
Protein splicing triggered by a small molecule
-
Mootz HD, Muir TW, (2002) Protein splicing triggered by a small molecule. J Am Chem Soc 124: 9044-9045.
-
(2002)
J Am Chem Soc
, vol.124
, pp. 9044-9045
-
-
Mootz, H.D.1
Muir, T.W.2
-
7
-
-
0043237657
-
"The splice is right": how protein splicing is opening new doors in protein science
-
Schwartz EC, Muir TW, Tyszkiewicz AB, (2003) "The splice is right": how protein splicing is opening new doors in protein science. Chemical Communications 17: 2087-2090.
-
(2003)
Chemical Communications
, vol.17
, pp. 2087-2090
-
-
Schwartz, E.C.1
Muir, T.W.2
Tyszkiewicz, A.B.3
-
8
-
-
13244252218
-
Regulation of protein activity with small-molecule-controlled inteins
-
Skretas G, Wood DW, (2005) Regulation of protein activity with small-molecule-controlled inteins. Protein Science 14: 523-532.
-
(2005)
Protein Science
, vol.14
, pp. 523-532
-
-
Skretas, G.1
Wood, D.W.2
-
9
-
-
33745968727
-
Control of transcription factor activity and osteoblast differentiation in mammalian cells using an evolved small-molecule-dependent intein
-
Yuen CM, Rodda SJ, Vokes SA, McMahon AP, Liu DR, (2006) Control of transcription factor activity and osteoblast differentiation in mammalian cells using an evolved small-molecule-dependent intein. J Am Chem Soc 128: 8939-8946.
-
(2006)
J Am Chem Soc
, vol.128
, pp. 8939-8946
-
-
Yuen, C.M.1
Rodda, S.J.2
Vokes, S.A.3
McMahon, A.P.4
Liu, D.R.5
-
10
-
-
0036753960
-
Development of a positive genetic selection system for inhibition of protein splicing using mycobacterial inteins in Escherichia coli DNA gyrase subunit A
-
Adam E, Perler FB, (2002) Development of a positive genetic selection system for inhibition of protein splicing using mycobacterial inteins in Escherichia coli DNA gyrase subunit A. J Mol Microbiol Biotechnol 4: 479-487.
-
(2002)
J Mol Microbiol Biotechnol
, vol.4
, pp. 479-487
-
-
Adam, E.1
Perler, F.B.2
-
11
-
-
17744415288
-
Single-column purification of free recombinant proteins using a self-cleavable affinity tag derived from a protein splicing element
-
Chong S, Mersha FB, Comb DG, Scott ME, Landry D, et al. (1997) Single-column purification of free recombinant proteins using a self-cleavable affinity tag derived from a protein splicing element. Gene 192: 271-281.
-
(1997)
Gene
, vol.192
, pp. 271-281
-
-
Chong, S.1
Mersha, F.B.2
Comb, D.G.3
Scott, M.E.4
Landry, D.5
-
12
-
-
0032562685
-
Modulation of protein splicing of the Saccharomyces cerevisiae vacuolar membrane ATPase intein
-
Chong SR, Williams KS, Wotkowicz C, Xu MQ, (1998) Modulation of protein splicing of the Saccharomyces cerevisiae vacuolar membrane ATPase intein. Journal of Biological Chemistry 273: 10567-10577.
-
(1998)
Journal of Biological Chemistry
, vol.273
, pp. 10567-10577
-
-
Chong, S.R.1
Williams, K.S.2
Wotkowicz, C.3
Xu, M.Q.4
-
13
-
-
0039374819
-
The in vitro ligation of bacterially expressed proteins using an intein from Methanobacterium thermoautotrophicum
-
Evans TC Jr, Benner J, Xu MQ, (1999) The in vitro ligation of bacterially expressed proteins using an intein from Methanobacterium thermoautotrophicum. J Biol Chem 274: 3923-3926.
-
(1999)
J Biol Chem
, vol.274
, pp. 3923-3926
-
-
Evans Jr., T.C.1
Benner, J.2
Xu, M.Q.3
-
14
-
-
0033614484
-
Characterization of a self-splicing mini-intein and its conversion into autocatalytic N- and C-terminal cleavage elements: facile production of protein building blocks for protein ligation
-
Mathys S, Evans TC, Chute IC, Wu H, Chong SR, et al. (1999) Characterization of a self-splicing mini-intein and its conversion into autocatalytic N- and C-terminal cleavage elements: facile production of protein building blocks for protein ligation. Gene 231: 1-13.
-
(1999)
Gene
, vol.231
, pp. 1-13
-
-
Mathys, S.1
Evans, T.C.2
Chute, I.C.3
Wu, H.4
Chong, S.R.5
-
15
-
-
0032988320
-
Purification of proteins fused to either the amino or carboxy terminus of the Mycobacterium xenopi gyrase A intein
-
Southworth MW, Amaya K, Evans TC, Xu MQ, Perler FB, (1999) Purification of proteins fused to either the amino or carboxy terminus of the Mycobacterium xenopi gyrase A intein. Biotechniques 27: 110-114, 116, 118-120.
-
(1999)
Biotechniques
, vol.27
-
-
Southworth, M.W.1
Amaya, K.2
Evans, T.C.3
Xu, M.Q.4
Perler, F.B.5
-
16
-
-
67650492166
-
Modulation of intein activity by its neighboring extein substrates
-
Amitai G, Callahan BP, Stanger MJ, Belfort G, Belfort M, (2009) Modulation of intein activity by its neighboring extein substrates. Proc Natl Acad Sci U S A 106: 11005-11010.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 11005-11010
-
-
Amitai, G.1
Callahan, B.P.2
Stanger, M.J.3
Belfort, G.4
Belfort, M.5
-
17
-
-
33644912308
-
Highly efficient protein trans-splicing by a naturally split DnaE intein from Nostoc punctiforme
-
Iwai H, Zuger S, Jin J, Tam PH, (2006) Highly efficient protein trans-splicing by a naturally split DnaE intein from Nostoc punctiforme. FEBS Lett 580: 1853-1858.
-
(2006)
FEBS Lett
, vol.580
, pp. 1853-1858
-
-
Iwai, H.1
Zuger, S.2
Jin, J.3
Tam, P.H.4
-
18
-
-
34547420623
-
Preceding hydrophobic and beta-branched amino acids attenuate splicing by the CnePRP8 intein
-
Pearl EJ, Bokor AAM, Butler MI, Poulter RTM, Wilbanks SM, (2007) Preceding hydrophobic and beta-branched amino acids attenuate splicing by the CnePRP8 intein. Biochimica et Biophysica Acta-Proteins and Proteomics 1774: 995-1001.
-
(2007)
Biochimica Et Biophysica Acta-Proteins and Proteomics
, vol.1774
, pp. 995-1001
-
-
Pearl, E.J.1
Bokor, A.A.M.2
Butler, M.I.3
Poulter, R.T.M.4
Wilbanks, S.M.5
-
19
-
-
34250196882
-
Sequence requirements for splicing by the Cne PRP8 intein
-
Pearl EJ, Tyndall JDA, Poulter RTM, Wilbanks SM, (2007) Sequence requirements for splicing by the Cne PRP8 intein. FEBS Letters 581: 3000-3004.
-
(2007)
FEBS Letters
, vol.581
, pp. 3000-3004
-
-
Pearl, E.J.1
Tyndall, J.D.A.2
Poulter, R.T.M.3
Wilbanks, S.M.4
-
20
-
-
0037454737
-
In vitro splicing of erythropoietin by the Mycobacterium tuberculosis RecA intein without substituting amino acids at the splice junctions
-
Gangopadhyay JP, Jiang SQ, van Berkel P, Paulus H, (2003) In vitro splicing of erythropoietin by the Mycobacterium tuberculosis RecA intein without substituting amino acids at the splice junctions. Biochimica et Biophysica Acta-Proteins and Proteomics 1619: 193-200.
-
(2003)
Biochimica Et Biophysica Acta-Proteins and Proteomics
, vol.1619
, pp. 193-200
-
-
Gangopadhyay, J.P.1
Jiang, S.Q.2
van Berkel, P.3
Paulus, H.4
-
21
-
-
0034595699
-
Structural insights into the protein splicing mechanism of PI-SceI
-
Poland BW, Xu MQ, Quiocho FA, (2000) Structural insights into the protein splicing mechanism of PI-SceI. Journal of Biological Chemistry 275: 16408-16413.
-
(2000)
Journal of Biological Chemistry
, vol.275
, pp. 16408-16413
-
-
Poland, B.W.1
Xu, M.Q.2
Quiocho, F.A.3
-
22
-
-
0034665054
-
An alternative protein splicing mechanism for inteins lacking an N-terminal nucleophile
-
Southworth MW, Benner J, Perler FB, (2000) An alternative protein splicing mechanism for inteins lacking an N-terminal nucleophile. EMBO Journal 19: 5019-5026.
-
(2000)
EMBO Journal
, vol.19
, pp. 5019-5026
-
-
Southworth, M.W.1
Benner, J.2
Perler, F.B.3
-
23
-
-
0034518359
-
Optimized single-step affinity purification with a self-cleaving intein applied to human acidic fibroblast growth factor
-
Wood DW, Derbyshire V, Wu W, Chartrain M, Belfort M, et al. (2000) Optimized single-step affinity purification with a self-cleaving intein applied to human acidic fibroblast growth factor. Biotechnol Prog 16: 1055-1063.
-
(2000)
Biotechnol Prog
, vol.16
, pp. 1055-1063
-
-
Wood, D.W.1
Derbyshire, V.2
Wu, W.3
Chartrain, M.4
Belfort, M.5
-
24
-
-
80955151478
-
Global and grain specific accumulation of glycoside hydrolase family 10 xylanases in transgenic maize (Zea mays)
-
Gray B, Bougri O, Carlson AR, Meisner J, Pan S, et al. (2011) Global and grain specific accumulation of glycoside hydrolase family 10 xylanases in transgenic maize (Zea mays). Plant Biotechnology Journal 9: 1100-1108.
-
(2011)
Plant Biotechnology Journal
, vol.9
, pp. 1100-1108
-
-
Gray, B.1
Bougri, O.2
Carlson, A.R.3
Meisner, J.4
Pan, S.5
-
25
-
-
0032894598
-
InBase, the New England Biolabs Intein Database
-
Perler FB, (1999) InBase, the New England Biolabs Intein Database. Nucleic Acids Research 27: 346-347.
-
(1999)
Nucleic Acids Research
, vol.27
, pp. 346-347
-
-
Perler, F.B.1
-
26
-
-
0033963173
-
InBase, the Intein Database
-
Perler FB, (2000) InBase, the Intein Database. Nucleic Acids Research 28: 344-345.
-
(2000)
Nucleic Acids Research
, vol.28
, pp. 344-345
-
-
Perler, F.B.1
-
27
-
-
0036084146
-
InBase: The Intein Database
-
Perler FB, (2002) InBase: The Intein Database. Nucleic Acids Research 30: 383-384.
-
(2002)
Nucleic Acids Research
, vol.30
, pp. 383-384
-
-
Perler, F.B.1
-
28
-
-
0030729344
-
Statistical modeling and analysis of the LAGLIDADG family of site-specific endonucleases and identification of an intein that encodes a site-specific endonuclease of the HNH family
-
Dalgaard JZ, Klar AJ, Moser MJ, Holley WR, Chatterjee A, et al. (1997) Statistical modeling and analysis of the LAGLIDADG family of site-specific endonucleases and identification of an intein that encodes a site-specific endonuclease of the HNH family. Nucleic Acids Research 25: 4626-4638.
-
(1997)
Nucleic Acids Research
, vol.25
, pp. 4626-4638
-
-
Dalgaard, J.Z.1
Klar, A.J.2
Moser, M.J.3
Holley, W.R.4
Chatterjee, A.5
-
29
-
-
0026718843
-
Intervening sequences in an Archaea DNA polymerase gene
-
Perler FB, Comb DG, Jack WE, Moran LS, Qiang B, et al. (1992) Intervening sequences in an Archaea DNA polymerase gene. Proc Natl Acad Sci U S A 89: 5577-5581.
-
(1992)
Proc Natl Acad Sci U S A
, vol.89
, pp. 5577-5581
-
-
Perler, F.B.1
Comb, D.G.2
Jack, W.E.3
Moran, L.S.4
Qiang, B.5
-
30
-
-
76049084239
-
Conservation of intron and intein insertion sites: implications for life histories of parasitic genetic elements
-
Swithers KS, Senejani AG, Fournier GP, Gogarten JP, (2009) Conservation of intron and intein insertion sites: implications for life histories of parasitic genetic elements. BMC Evolutionary Biology 9.
-
(2009)
BMC Evolutionary Biology
, vol.9
-
-
Swithers, K.S.1
Senejani, A.G.2
Fournier, G.P.3
Gogarten, J.P.4
-
31
-
-
0035425040
-
Intein spread and extinction in evolution
-
Pietrokovski S, (2001) Intein spread and extinction in evolution. Trends in Genetics 17: 465-472.
-
(2001)
Trends in Genetics
, vol.17
, pp. 465-472
-
-
Pietrokovski, S.1
-
32
-
-
73249132200
-
Evolutionary maintenance of selfish homing endonuclease genes in the absence of horizontal transfer
-
Yahara K, Fukuyo M, Sasaki A, Kobayashi I, (2009) Evolutionary maintenance of selfish homing endonuclease genes in the absence of horizontal transfer. Proc Natl Acad Sci U S A 106: 18861-18866.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 18861-18866
-
-
Yahara, K.1
Fukuyo, M.2
Sasaki, A.3
Kobayashi, I.4
-
34
-
-
0038167128
-
Learning to Classify Text Using Support Vector Machines
-
The Springer International Series in Engineering and Computer Science
-
Joachims T, (2002) Learning to Classify Text Using Support Vector Machines. Methods, Theory and Algorithms Series The Springer International Series in Engineering and Computer Science.
-
(2002)
Methods, Theory and Algorithms Series
-
-
Joachims, T.1
-
35
-
-
0033954256
-
The Protein Data Bank
-
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, et al. (2000) The Protein Data Bank. Nucleic Acids Res 28: 235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
-
37
-
-
0036387236
-
Evaluation of structural and evolutionary contributions to deleterious mutation prediction
-
Saunders CT, Baker D, (2002) Evaluation of structural and evolutionary contributions to deleterious mutation prediction. J Mol Biol 322: 891-901.
-
(2002)
J Mol Biol
, vol.322
, pp. 891-901
-
-
Saunders, C.T.1
Baker, D.2
-
38
-
-
0031585984
-
Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions
-
Simons KT, Kooperberg C, Huang E, Baker D, (1997) Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions. J Mol Biol 268: 209-225.
-
(1997)
J Mol Biol
, vol.268
, pp. 209-225
-
-
Simons, K.T.1
Kooperberg, C.2
Huang, E.3
Baker, D.4
-
40
-
-
33846658665
-
Inteins - A Historical Perspective
-
In: Belfort M, Derbyshire V, Stoddard BL, Woods DW, editors
-
Perler FB, (2005) Inteins- A Historical Perspective. In: Belfort M, Derbyshire V, Stoddard BL, Woods DW, editors. Homing Endonucleases and Inteins: Springer pp. 193-210.
-
(2005)
Homing Endonucleases and Inteins
, pp. 193-210
-
-
Perler, F.B.1
-
41
-
-
0035941473
-
Herbicide resistance from a divided EPSPS protein: the split Synechocystis DnaE intein as an in vivo affinity domain
-
Chen LX, Pradhan S, Evans TC, (2001) Herbicide resistance from a divided EPSPS protein: the split Synechocystis DnaE intein as an in vivo affinity domain. Gene 263: 39-48.
-
(2001)
Gene
, vol.263
, pp. 39-48
-
-
Chen, L.X.1
Pradhan, S.2
Evans, T.C.3
-
42
-
-
0030952831
-
Identification of three core regions essential for protein splicing of the yeast Vma1 protozyme. A random mutagenesis study of the entire Vma1-derived endonuclease sequence
-
Kawasaki M, Nogami S, Satow Y, Ohya Y, Anraku Y, (1997) Identification of three core regions essential for protein splicing of the yeast Vma1 protozyme. A random mutagenesis study of the entire Vma1-derived endonuclease sequence. J Biol Chem 272: 15668-15674.
-
(1997)
J Biol Chem
, vol.272
, pp. 15668-15674
-
-
Kawasaki, M.1
Nogami, S.2
Satow, Y.3
Ohya, Y.4
Anraku, Y.5
-
43
-
-
0030982430
-
Probing novel elements for protein splicing in the yeast Vma1 protozyme: a study of replacement mutagenesis and intragenic suppression
-
Nogami S, Satow Y, Ohya Y, Anraku Y, (1997) Probing novel elements for protein splicing in the yeast Vma1 protozyme: a study of replacement mutagenesis and intragenic suppression. Genetics 147: 73-85.
-
(1997)
Genetics
, vol.147
, pp. 73-85
-
-
Nogami, S.1
Satow, Y.2
Ohya, Y.3
Anraku, Y.4
-
44
-
-
80054685109
-
Critical assessment of methods of protein structure prediction (CASP)-round IX
-
Moult J, Fidelis K, Kryshtafovych A, Tramontano A, (2011) Critical assessment of methods of protein structure prediction (CASP)-round IX. Proteins 79 (Suppl 10): 1-5.
-
(2011)
Proteins
, vol.79
, Issue.SUPPL. 10
, pp. 1-5
-
-
Moult, J.1
Fidelis, K.2
Kryshtafovych, A.3
Tramontano, A.4
-
45
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
-
47
-
-
27344436659
-
Scalable molecular dynamics with NAMD
-
Phillips JC, Braun R, Wang W, Gumbart J, Tajkhorshid E, et al. (2005) Scalable molecular dynamics with NAMD. J Comput Chem 26: 1781-1802.
-
(2005)
J Comput Chem
, vol.26
, pp. 1781-1802
-
-
Phillips, J.C.1
Braun, R.2
Wang, W.3
Gumbart, J.4
Tajkhorshid, E.5
-
48
-
-
78651319979
-
Ongoing and future developments at the Universal Protein Resource
-
The-UniProt-Consortium
-
The-UniProt-Consortium, (2011) Ongoing and future developments at the Universal Protein Resource. Nucleic Acids Res 39: D214-219.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
-
49
-
-
66449084442
-
Infrastructure for the life sciences: design and implementation of the UniProt website
-
Jain E, Bairoch A, Duvaud S, Phan I, Redaschi N, et al. (2009) Infrastructure for the life sciences: design and implementation of the UniProt website. BMC Bioinformatics 10: 136.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 136
-
-
Jain, E.1
Bairoch, A.2
Duvaud, S.3
Phan, I.4
Redaschi, N.5
-
50
-
-
58149193233
-
The SWISS-MODEL Repository and associated resources
-
Kiefer F, Arnold K, Kunzli M, Bordoli L, Schwede T, (2009) The SWISS-MODEL Repository and associated resources. Nucleic Acids Res 37: D387-392.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Kiefer, F.1
Arnold, K.2
Kunzli, M.3
Bordoli, L.4
Schwede, T.5
-
51
-
-
32144432437
-
The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling
-
Arnold K, Bordoli L, Kopp J, Schwede T, (2006) The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics 22: 195-201.
-
(2006)
Bioinformatics
, vol.22
, pp. 195-201
-
-
Arnold, K.1
Bordoli, L.2
Kopp, J.3
Schwede, T.4
-
52
-
-
0030053370
-
ProMod and Swiss-Model: Internet-based tools for automated comparative protein modelling
-
Peitsch MC, (1996) ProMod and Swiss-Model: Internet-based tools for automated comparative protein modelling. Biochem Soc Trans 24: 274-279.
-
(1996)
Biochem Soc Trans
, vol.24
, pp. 274-279
-
-
Peitsch, M.C.1
-
53
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ, (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
54
-
-
41449112448
-
Structure prediction of domain insertion proteins from structures of individual domains
-
Berrondo M, Ostermeier M, Gray JJ, (2008) Structure prediction of domain insertion proteins from structures of individual domains. Structure 16: 513-527.
-
(2008)
Structure
, vol.16
, pp. 513-527
-
-
Berrondo, M.1
Ostermeier, M.2
Gray, J.J.3
|