메뉴 건너뛰기




Volumn 338, Issue 4, 2004, Pages 633-641

Domain insertions in protein structures

Author keywords

Discontinuous domains; Domain insertion; Inserted domain; Non contiguous domains; PDB, Protein Data Bank; Protein engineering; SCOP, structural classification of proteins

Indexed keywords

PROTEIN;

EID: 1942425613     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2004.03.039     Document Type: Article
Times cited : (73)

References (30)
  • 1
    • 0028961335 scopus 로고
    • SCOP: A structural classification of proteins database for the investigation of sequences and structures
    • Murzin A.G., Brenner S.E., Hubbard T., Chothia C. SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol. 247:1995;536-540.
    • (1995) J. Mol. Biol. , vol.247 , pp. 536-540
    • Murzin, A.G.1    Brenner, S.E.2    Hubbard, T.3    Chothia, C.4
  • 3
    • 0029785147 scopus 로고    scopus 로고
    • Mapping the protein universe
    • Holm L., Sander C. Mapping the protein universe. Science. 273:1996;595-603.
    • (1996) Science , vol.273 , pp. 595-603
    • Holm, L.1    Sander, C.2
  • 4
    • 0027122748 scopus 로고
    • Proteins. One thousand families for the molecular biologist
    • Chothia C. Proteins. One thousand families for the molecular biologist. Nature. 357:1992;543-544.
    • (1992) Nature , vol.357 , pp. 543-544
    • Chothia, C.1
  • 6
    • 0032424307 scopus 로고    scopus 로고
    • Structural assignments to the Mycoplasma genitalium proteins show extensive gene duplications and domain rearrangements
    • Teichmann S.A., Park J., Chothia C. Structural assignments to the Mycoplasma genitalium proteins show extensive gene duplications and domain rearrangements. Proc. Natl Acad. Sci. USA. 95:1998;14658-14663.
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 14658-14663
    • Teichmann, S.A.1    Park, J.2    Chothia, C.3
  • 7
    • 0015597839 scopus 로고
    • Nucleation, rapid folding, and globular intrachain regions in proteins
    • Wetlaufer D.B. Nucleation, rapid folding, and globular intrachain regions in proteins. Proc. Natl Acad. Sci. USA. 70:1973;697-701.
    • (1973) Proc. Natl Acad. Sci. USA , vol.70 , pp. 697-701
    • Wetlaufer, D.B.1
  • 8
    • 0028588070 scopus 로고
    • Domain insertion
    • Russell R.B. Domain insertion. Protein Eng. 7:1994;1407-1410.
    • (1994) Protein Eng. , vol.7 , pp. 1407-1410
    • Russell, R.B.1
  • 10
    • 0028205447 scopus 로고
    • Enlarged representative set of protein structures
    • Hobohm U., Sander C. Enlarged representative set of protein structures. Protein Sci. 3:1994;522-524.
    • (1994) Protein Sci. , vol.3 , pp. 522-524
    • Hobohm, U.1    Sander, C.2
  • 12
    • 0034650343 scopus 로고    scopus 로고
    • Crystal structure of RNA 3′-terminal phosphate cyclase, a ubiquitous enzyme with unusual topology
    • Palm G.J., Billy E., Filipowicz W., Wlodawer A. Crystal structure of RNA 3′-terminal phosphate cyclase, a ubiquitous enzyme with unusual topology. Struct. Fold. Des. 8:2000;13-23.
    • (2000) Struct. Fold. Des. , vol.8 , pp. 13-23
    • Palm, G.J.1    Billy, E.2    Filipowicz, W.3    Wlodawer, A.4
  • 13
    • 0032478545 scopus 로고    scopus 로고
    • Crystal structure of the thermosome, the archaeal chaperonin and homolog of CCT
    • Ditzel L., Lowe J., Stock D., Stetter K.O., Huber H., Huber R., Steinbacher S. Crystal structure of the thermosome, the archaeal chaperonin and homolog of CCT. Cell. 93:1998;125-138.
    • (1998) Cell , vol.93 , pp. 125-138
    • Ditzel, L.1    Lowe, J.2    Stock, D.3    Stetter, K.O.4    Huber, H.5    Huber, R.6    Steinbacher, S.7
  • 14
    • 0033551092 scopus 로고    scopus 로고
    • Characteristics and crystal structure of bacterial inosine-5′- monophosphate dehydrogenase
    • Zhang R., Evans G., Rotella F.J., Westbrook E.M., Beno D., Huberman E., et al. Characteristics and crystal structure of bacterial inosine-5′- monophosphate dehydrogenase. Biochemistry. 38:1999;4691-4700.
    • (1999) Biochemistry , vol.38 , pp. 4691-4700
    • Zhang, R.1    Evans, G.2    Rotella, F.J.3    Westbrook, E.M.4    Beno, D.5    Huberman, E.6
  • 15
    • 0034595699 scopus 로고    scopus 로고
    • Structural insights into the protein splicing mechanism of PI-SceI
    • Poland B.W., Xu M.Q., Quiocho F.A. Structural insights into the protein splicing mechanism of PI-SceI. J. Biol. Chem. 275:2000;16408-16413.
    • (2000) J. Biol. Chem. , vol.275 , pp. 16408-16413
    • Poland, B.W.1    Xu, M.Q.2    Quiocho, F.A.3
  • 16
    • 0034697993 scopus 로고    scopus 로고
    • Crystal structure of an archaeal intein-encoded homing endonuclease PI-PfuI
    • Ichiyanagi K., Ishino Y., Ariyoshi M., Komori K., Morikawa K. Crystal structure of an archaeal intein-encoded homing endonuclease PI-PfuI. J. Mol. Biol. 300:2000;889-901.
    • (2000) J. Mol. Biol. , vol.300 , pp. 889-901
    • Ichiyanagi, K.1    Ishino, Y.2    Ariyoshi, M.3    Komori, K.4    Morikawa, K.5
  • 17
    • 0033567272 scopus 로고    scopus 로고
    • Homing endonucleases: Structure, function and evolution
    • Jurica M.S., Stoddard B.L. Homing endonucleases: structure, function and evolution. Cell Mol. Life Sci. 55:1999;1304-1326.
    • (1999) Cell Mol. Life Sci. , vol.55 , pp. 1304-1326
    • Jurica, M.S.1    Stoddard, B.L.2
  • 18
    • 0031565915 scopus 로고    scopus 로고
    • A structural census of genomes: Comparing bacterial, eukaryotic, and archaeal genomes in terms of protein structure
    • Gerstein M. A structural census of genomes: comparing bacterial, eukaryotic, and archaeal genomes in terms of protein structure. J. Mol. Biol. 274:1997;562-576.
    • (1997) J. Mol. Biol. , vol.274 , pp. 562-576
    • Gerstein, M.1
  • 19
    • 0031047590 scopus 로고    scopus 로고
    • Insertion of foreign random sequences of 120 amino acid residues into an active enzyme
    • Doi N., Itaya M., Yomo T., Tokura S., Yanagawa H. Insertion of foreign random sequences of 120 amino acid residues into an active enzyme. FEBS Letters. 402:1997;177-180.
    • (1997) FEBS Letters , vol.402 , pp. 177-180
    • Doi, N.1    Itaya, M.2    Yomo, T.3    Tokura, S.4    Yanagawa, H.5
  • 20
    • 0033597176 scopus 로고    scopus 로고
    • The relationship between protein structure and function: A comprehensive survey with application to the yeast genome
    • Hegyi H., Gerstein M. The relationship between protein structure and function: a comprehensive survey with application to the yeast genome. J. Mol. Biol. 288:1999;147-164.
    • (1999) J. Mol. Biol. , vol.288 , pp. 147-164
    • Hegyi, H.1    Gerstein, M.2
  • 21
    • 0036301445 scopus 로고    scopus 로고
    • Proteins with class alpha/beta fold have high-level participation in fusion events
    • Hua S., Guo T., Gough J., Sun Z. Proteins with class alpha/beta fold have high-level participation in fusion events. J. Mol. Biol. 320:2002;713-719.
    • (2002) J. Mol. Biol. , vol.320 , pp. 713-719
    • Hua, S.1    Guo, T.2    Gough, J.3    Sun, Z.4
  • 23
    • 0035816218 scopus 로고    scopus 로고
    • Domain combinations in archaeal, eubacterial and eukaryotic proteomes
    • Apic G., Gough J., Teichmann S.A. Domain combinations in archaeal, eubacterial and eukaryotic proteomes. J. Mol. Biol. 310:2001;311-325.
    • (2001) J. Mol. Biol. , vol.310 , pp. 311-325
    • Apic, G.1    Gough, J.2    Teichmann, S.A.3
  • 24
    • 0036205337 scopus 로고    scopus 로고
    • The CATH protein family database: A resource for structural and functional annotation of genomes
    • Orengo C.A., Bray J.E., Buchan D.W., Harrison A., Lee D., Pearl F.M., et al. The CATH protein family database: a resource for structural and functional annotation of genomes. Proteomics. 2:2002;11-21.
    • (2002) Proteomics , vol.2 , pp. 11-21
    • Orengo, C.A.1    Bray, J.E.2    Buchan, D.W.3    Harrison, A.4    Lee, D.5    Pearl, F.M.6
  • 25
    • 0030696198 scopus 로고    scopus 로고
    • Creating a bifunctional protein by insertion of beta-lactamase into the maltodextrin-binding protein
    • Betton J.M., Jacob J.P., Hofnung M., Broome-Smith J.K. Creating a bifunctional protein by insertion of beta-lactamase into the maltodextrin-binding protein. Nature Biotechnol. 15:1997;1276-1279.
    • (1997) Nature Biotechnol. , vol.15 , pp. 1276-1279
    • Betton, J.M.1    Jacob, J.P.2    Hofnung, M.3    Broome-Smith, J.K.4
  • 26
    • 0023274512 scopus 로고
    • Silent and functional changes in the periplasmic maltose-binding protein of Escherichia coli K12. I. Transport of maltose
    • Duplay P., Szmelcman S., Bedouelle H., Hofnung M. Silent and functional changes in the periplasmic maltose-binding protein of Escherichia coli K12. I. Transport of maltose. J. Mol. Biol. 194:1987;663-673.
    • (1987) J. Mol. Biol. , vol.194 , pp. 663-673
    • Duplay, P.1    Szmelcman, S.2    Bedouelle, H.3    Hofnung, M.4
  • 27
    • 0032499716 scopus 로고    scopus 로고
    • Structure and function of the Bacillus hybrid enzyme GluXyn-1: Native-like jellyroll fold preserved after insertion of autonomous globular domain
    • Ay J., Gotz F., Borriss R., Heinemann U. Structure and function of the Bacillus hybrid enzyme GluXyn-1: native-like jellyroll fold preserved after insertion of autonomous globular domain. Proc. Natl Acad. Sci. USA. 95:1998;6613-6618.
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 6613-6618
    • Ay, J.1    Gotz, F.2    Borriss, R.3    Heinemann, U.4
  • 29
    • 0347755626 scopus 로고    scopus 로고
    • DomIns: A web resource for domain insertions in known protein structures
    • Selvam R.A., Sasidharan R. DomIns: a web resource for domain insertions in known protein structures. Nucl. Acids Res. 32:2004;D193-D195.
    • (2004) Nucl. Acids Res. , vol.32
    • Selvam, R.A.1    Sasidharan, R.2
  • 30
    • 0026244229 scopus 로고
    • MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
    • Kraulis P.J. MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J. Appl. Crystallog. 24:1991;946-950.
    • (1991) J. Appl. Crystallog. , vol.24 , pp. 946-950
    • Kraulis, P.J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.