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Volumn 25, Issue 1, 2012, Pages 75-93

Genome wide identification of Acidithiobacillus ferrooxidans (ATCC 23270) transcription factors and comparative analysis of ArsR and MerR metal regulators

Author keywords

Acidithiobacillus ferrooxidans; ArsR family; MerR family; Metalresistance; Transcriptional regulators

Indexed keywords

ARSR PROTEIN; BACTERIAL PROTEIN; MERR PROTEIN; PROTEIN ARSR; PROTEOME; REGULATOR PROTEIN; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG; DNA BINDING PROTEIN; MERR PROTEIN, BACTERIA; METAL;

EID: 84861215574     PISSN: 09660844     EISSN: 15728773     Source Type: Journal    
DOI: 10.1007/s10534-011-9484-8     Document Type: Article
Times cited : (15)

References (104)
  • 1
    • 59149102602 scopus 로고    scopus 로고
    • Phylogenetic and functional assessment of orthologs inference projects and methods
    • doi:10.1371/journal. pcbi.1000262
    • Altenhoff AM, Dessimoz C (2009) Phylogenetic and functional assessment of orthologs inference projects and methods. PLoS Comput Biol 5(1):e1000262. doi:10.1371/journal. pcbi.1000262
    • (2009) PLoS Comput Biol , vol.5 , Issue.1
    • Altenhoff, A.M.1    Dessimoz, C.2
  • 2
    • 0038664315 scopus 로고    scopus 로고
    • HutC/FarR-like bacterial transcription factors of the GntR family contain a small molecule-binding domain of the chorismate lyase fold
    • doi:10.1016/S0378-1097(03)00242-8
    • Aravind L, Anantharaman V (2003) HutC/FarR-like bacterial transcription factors of the GntR family contain a small molecule-binding domain of the chorismate lyase fold. FEMS Microbiol Lett 222(1):17-23. doi:10.1016/S0378- 1097(03)00242-8
    • (2003) FEMS Microbiol Lett , vol.222 , Issue.1 , pp. 17-23
    • Aravind, L.1    Anantharaman, V.2
  • 3
    • 15944379232 scopus 로고    scopus 로고
    • The many faces of the helix-turn-helix domain: Transcription regulation and beyond
    • doi:10.1016/j.femsre.2004.12.008
    • Aravind L, Anantharaman V, Balaji S, Babu MM, Iyer LM (2005) The many faces of the helix-turn-helix domain: transcription regulation and beyond. FEMS Microbiol Rev 29(2):231-262. doi:10.1016/j.femsre.2004.12.008
    • (2005) FEMS Microbiol Rev , vol.29 , Issue.2 , pp. 231-262
    • Aravind, L.1    Anantharaman, V.2    Balaji, S.3    Babu, M.M.4    Iyer, L.M.5
  • 5
    • 33644604851 scopus 로고    scopus 로고
    • CoryneRegNet: An ontology-based data warehouse of corynebacterial transcription factors and regulatory networks
    • doi:10.1186/1471-21 64-7-24
    • Baumbach J, Brinkrolf K, Czaja LF, Rahmann S, Tauch A (2006) CoryneRegNet: an ontology-based data warehouse of corynebacterial transcription factors and regulatory networks. BMC Genomics 7:24. doi:10.1186/1471-21 64-7-24
    • (2006) BMC Genomics , vol.7 , pp. 24
    • Baumbach, J.1    Brinkrolf, K.2    Czaja, L.F.3    Rahmann, S.4    Tauch, A.5
  • 6
    • 62649125796 scopus 로고    scopus 로고
    • Reliable transfer of transcriptional gene regulatory networks between taxonomically related organisms
    • doi: 10.1186/1752-0509-3-8
    • Baumbach J, Rahmann S, Tauch A (2009a) Reliable transfer of transcriptional gene regulatory networks between taxonomically related organisms. BMC Syst Biol 3:8. doi: 10.1186/1752-0509-3-8
    • (2009) BMC Syst Biol , vol.3 , pp. 8
    • Baumbach, J.1    Rahmann, S.2    Tauch, A.3
  • 7
    • 68149161129 scopus 로고    scopus 로고
    • Integrated analysis and reconstruction of microbial transcriptional gene regulatory networks using CoryneRegNet
    • doi:10.1038/nprot.2009.81
    • Baumbach J, Wittkop T, Kleindt CK, Tauch A (2009b) Integrated analysis and reconstruction of microbial transcriptional gene regulatory networks using CoryneRegNet. Nat Protoc 4(6):992-1005. doi:10.1038/nprot.2009.81
    • (2009) Nat Protoc , vol.4 , Issue.6 , pp. 992-1005
    • Baumbach, J.1    Wittkop, T.2    Kleindt, C.K.3    Tauch, A.4
  • 9
    • 33747750273 scopus 로고    scopus 로고
    • Proteomic and bioinformatic analysis of iron-and sulfur-oxidizing Acidithiobacillus ferrooxidans using immobilized pH gradients and mass spectrometry
    • doi:10.1002/pmic.200500 719
    • Bouchal P, Zdrahal Z, Helanova S, Janiczek O, Hallberg KB, Mandl M (2006) Proteomic and bioinformatic analysis of iron-and sulfur-oxidizing Acidithiobacillus ferrooxidans using immobilized pH gradients and mass spectrometry. Proteomics 6(15):4278-4285. doi:10.1002/pmic.200500 719
    • (2006) Proteomics , vol.6 , Issue.15 , pp. 4278-4285
    • Bouchal, P.1    Zdrahal, Z.2    Helanova, S.3    Janiczek, O.4    Hallberg, K.B.5    Mandl, M.6
  • 10
    • 0030844766 scopus 로고    scopus 로고
    • Cysteine-to-alanine replacements in the Escherichia coli SoxR protein and the role of the [2Fe-2S] centers in transcriptional activation
    • doi:10.1093/nar/25.8.1469
    • Bradley TM, Hidalgo E, Leautaud V, Ding H, Demple B (1997) Cysteine-to-alanine replacements in the Escherichia coli SoxR protein and the role of the [2Fe-2S] centers in transcriptional activation. Nucleic Acids Res 25(8):1469-1475. doi:10.1093/nar/25.8.1469
    • (1997) Nucleic Acids Res , vol.25 , Issue.8 , pp. 1469-1475
    • Bradley, T.M.1    Hidalgo, E.2    Leautaud, V.3    Ding, H.4    Demple, B.5
  • 11
    • 0038349269 scopus 로고    scopus 로고
    • The Lrp family of transcriptional regulators
    • doi:10.1155/2010/750457
    • Brinkman AB, Ettema TJ, de Vos WM, van der Oost J (2003) The Lrp family of transcriptional regulators. Mol Microbiol 48(2):287-294. doi:10.1155/2010/ 750457
    • (2003) Mol Microbiol , vol.48 , Issue.2 , pp. 287-294
    • Brinkman, A.B.1    Ettema, T.J.2    De Vos, W.M.3    Van Der Oost, J.4
  • 12
    • 0042093655 scopus 로고    scopus 로고
    • Characterisation of CadR from Pseudomonas aeruginosa: A Cd(II)-responsive MerR homologue
    • doi:10.1016/S0006-291X(03) 01366-4
    • Brocklehurst KR, Megit SJ, Morby AP (2003) Characterisation of CadR from Pseudomonas aeruginosa: a Cd(II)-responsive MerR homologue. Biochem Biophys Res Commun 308(2):234-239. doi:10.1016/S0006-291X(03) 01366-4
    • (2003) Biochem Biophys Res Commun , vol.308 , Issue.2 , pp. 234-239
    • Brocklehurst, K.R.1    Megit, S.J.2    Morby, A.P.3
  • 13
    • 0038579429 scopus 로고    scopus 로고
    • The MerR family of transcriptional regulators
    • doi:10.1016/S0168-6445(03) 00051-2
    • Brown NL, Stoyanov JV, Kidd SP, Hobman JL (2003) The MerR family of transcriptional regulators. FEMS Microbiol Rev 27(2-3):145-163. doi:10.1016/S0168-6445(03) 00051-2
    • (2003) FEMS Microbiol Rev , vol.27 , Issue.2-3 , pp. 145-163
    • Brown, N.L.1    Stoyanov, J.V.2    Kidd, S.P.3    Hobman, J.L.4
  • 14
    • 25444441531 scopus 로고    scopus 로고
    • The individual and common repertoire of DNA-binding transcriptional regulators of Corynebacterium glutamicum, Corynebacterium efficiens, Corynebacterium diphtheriae and Corynebacterium jeikeium deduced from the complete genome sequences
    • doi:10.1186/1471-2164-6-86
    • Brune I, Brinkrolf K, Kalinowski J, Puhler A, Tauch A (2005) The individual and common repertoire of DNA-binding transcriptional regulators of Corynebacterium glutamicum, Corynebacterium efficiens, Corynebacterium diphtheriae and Corynebacterium jeikeium deduced from the complete genome sequences. BMC Genomics 6(1):86. doi:10.1186/1471-2164-6-86
    • (2005) BMC Genomics , vol.6 , Issue.1 , pp. 86
    • Brune, I.1    Brinkrolf, K.2    Kalinowski, J.3    Puhler, A.4    Tauch, A.5
  • 15
    • 0037565104 scopus 로고    scopus 로고
    • The SmtB/ ArsR family of metalloregulatory transcriptional repressors: Structural insights into prokaryotic metal resistance
    • doi:10.1016/S0 168-6445(03)00054-8
    • Busenlehner LS, Pennella MA, Giedroc DP (2003) The SmtB/ ArsR family of metalloregulatory transcriptional repressors: structural insights into prokaryotic metal resistance. FEMS Microbiol Rev 27(2-3):131-143. doi:10.1016/S0 168-6445(03)00054-8
    • (2003) FEMS Microbiol Rev , vol.27 , Issue.2-3 , pp. 131-143
    • Busenlehner, L.S.1    Pennella, M.A.2    Giedroc, D.P.3
  • 16
    • 0036952670 scopus 로고    scopus 로고
    • The divergent chromosomal ars operon of Acidithiobacillus ferrooxidans is regulated by an atypical ArsR protein
    • Butcher BG, Rawlings DE (2002) The divergent chromosomal ars operon of Acidithiobacillus ferrooxidans is regulated by an atypical ArsR protein. Microbiology 148(Pt 12): 3983-3992
    • (2002) Microbiology , vol.148 , Issue.PART 12 , pp. 3983-3992
    • Butcher, B.G.1    Rawlings, D.E.2
  • 17
    • 0034016916 scopus 로고    scopus 로고
    • The chromosomal arsenic resistance genes of Thiobacillus ferrooxidans have an unusual arrangement and confer increased arsenic and antimony resistance to Escherichia coli
    • Butcher BG, Deane SM, Rawlings DE (2000) The chromosomal arsenic resistance genes of Thiobacillus ferrooxidans have an unusual arrangement and confer increased arsenic and antimony resistance to Escherichia coli. Appl Environ Microbiol 66(5):1826-1833
    • (2000) Appl Environ Microbiol , vol.66 , Issue.5 , pp. 1826-1833
    • Butcher, B.G.1    Deane, S.M.2    Rawlings, D.E.3
  • 18
    • 0028111825 scopus 로고
    • The leucine-responsive regulatory protein, a global regulator of metabolism in Escherichia coli
    • Calvo JM, Matthews RG (1994) The leucine-responsive regulatory protein, a global regulator of metabolism in Escherichia coli. Microbiol Rev 58(3):466-490
    • (1994) Microbiol Rev , vol.58 , Issue.3 , pp. 466-490
    • Calvo, J.M.1    Matthews, R.G.2
  • 20
    • 42049101400 scopus 로고    scopus 로고
    • AHL-driven quorumsensing circuits: Their frequency and function among the Proteobacteria
    • doi:10.1038/ismej. 2008.13
    • Case RJ, Labbate M, Kjelleberg S (2008) AHL-driven quorumsensing circuits: their frequency and function among the Proteobacteria. ISME J 2(4):345-349. doi:10.1038/ismej. 2008.13
    • (2008) ISME J , vol.2 , Issue.4 , pp. 345-349
    • Case, R.J.1    Labbate, M.2    Kjelleberg, S.3
  • 21
    • 2942628401 scopus 로고    scopus 로고
    • Characterization of the MerD protein from Ralstonia metallidurans CH34: A possible role in bacterial mercury resistance by switching off the induction of the mer operon
    • doi:10.1111/j. 1365-2958.2004.04071.x
    • Champier L, Duarte V, Michaud-Soret I, Coves J (2004) Characterization of the MerD protein from Ralstonia metallidurans CH34: a possible role in bacterial mercury resistance by switching off the induction of the mer operon. Mol Microbiol 52(5):1475-1485. doi:10.1111/j. 1365-2958.2004.04071.x
    • (2004) Mol Microbiol , vol.52 , Issue.5 , pp. 1475-1485
    • Champier, L.1    Duarte, V.2    Michaud-Soret, I.3    Coves, J.4
  • 22
    • 0043192605 scopus 로고    scopus 로고
    • Molecular basis of metal-ion selectivity and zeptomolar sensitivity by CueR
    • doi:10.1126/science.108 5950
    • Changela A, Chen K, Xue Y, Holschen J, Outten CE, O'Halloran TV, Mondragon A (2003) Molecular basis of metal-ion selectivity and zeptomolar sensitivity by CueR. Science 301(5638):1383-1387. doi:10.1126/science.108 5950
    • (2003) Science , vol.301 , Issue.5638 , pp. 1383-1387
    • Changela, A.1    Chen, K.2    Xue, Y.3    Holschen, J.4    Outten, C.E.5    O'halloran, T.V.6    Mondragon, A.7
  • 23
    • 78649874431 scopus 로고    scopus 로고
    • Genomic repertoires of DNA-binding transcription factors across the tree of life
    • doi: 10.1093/nar/gkq617
    • Charoensawan V, Wilson D, Teichmann SA (2010) Genomic repertoires of DNA-binding transcription factors across the tree of life. Nucleic Acids Res 38(21):7364-7377. doi: 10.1093/nar/gkq617
    • (2010) Nucleic Acids Res , vol.38 , Issue.21 , pp. 7364-7377
    • Charoensawan, V.1    Wilson, D.2    Teichmann, S.A.3
  • 24
    • 20444422946 scopus 로고    scopus 로고
    • AbrB-like transcription factors assume a swapped hairpin fold that is evolutionarily related to double-psi beta barrels
    • doi:10.1016/j.str.2005.03.017
    • Coles M, Djuranovic S, Soding J, Frickey T, Koretke K, Truffault V, Martin J, Lupas AN (2005) AbrB-like transcription factors assume a swapped hairpin fold that is evolutionarily related to double-psi beta barrels. Structure 13(6):919-928. doi:10.1016/j.str.2005.03.017
    • (2005) Structure , vol.13 , Issue.6 , pp. 919-928
    • Coles, M.1    Djuranovic, S.2    Soding, J.3    Frickey, T.4    Koretke, K.5    Truffault, V.6    Martin, J.7    Lupas, A.N.8
  • 25
    • 32044440515 scopus 로고    scopus 로고
    • Isolation, sequence analysis, and comparison of two plasmids (28 and 29 kilobases) from the biomining bacterium Leptospirillum ferrooxidans ATCC 49879
    • doi:10.1128/AEM.71.11.7515-7522.2005
    • Coram NJ, van Zyl LJ, Rawlings DE (2005) Isolation, sequence analysis, and comparison of two plasmids (28 and 29 kilobases) from the biomining bacterium Leptospirillum ferrooxidans ATCC 49879. Appl Environ Microbiol 71(11): 7515-7522. doi:10.1128/AEM.71.11.7515-7522.2005
    • (2005) Appl Environ Microbiol , vol.71 , Issue.11 , pp. 7515-7522
    • Coram, N.J.1    Van Zyl, L.J.2    Rawlings, D.E.3
  • 26
    • 2142738304 scopus 로고    scopus 로고
    • Web-Logo: A sequence logo generator
    • doi:10.1101/gr.849004
    • Crooks GE, Hon G, Chandonia JM, Brenner SE (2004) Web-Logo: a sequence logo generator. Genome Res 14(6): 1188-1190. doi:10.1101/gr.849004
    • (2004) Genome Res , vol.14 , Issue.6 , pp. 1188-1190
    • Crooks, G.E.1    Hon, G.2    Chandonia, J.M.3    Brenner, S.E.4
  • 27
    • 50649098819 scopus 로고    scopus 로고
    • Redox-active antibiotics control gene expression and community behavior in divergent bacteria
    • doi:10.1126/science.1160619
    • Dietrich LE, Teal TK, Price-Whelan A, Newman DK (2008) Redox-active antibiotics control gene expression and community behavior in divergent bacteria. Science 321(5893):1203-1206. doi:10.1126/science.1160619
    • (2008) Science , vol.321 , Issue.5893 , pp. 1203-1206
    • Dietrich, L.E.1    Teal, T.K.2    Price-Whelan, A.3    Newman, D.K.4
  • 28
    • 0024999332 scopus 로고
    • Improved detection of helix-turnhelix DNA-binding motifs in protein sequences
    • Dodd IB, Egan JB (1990) Improved detection of helix-turnhelix DNA-binding motifs in protein sequences. Nucleic Acids Res 18(17):5019-5026
    • (1990) Nucleic Acids Res , vol.18 , Issue.17 , pp. 5019-5026
    • Dodd, I.B.1    Egan, J.B.2
  • 29
    • 1842478124 scopus 로고    scopus 로고
    • DNA-binding studies on the Bacillus subtilis transcriptional regulator and AbrB homologue, SpoVT
    • doi:10.1016/j.femsle.2004.02.013
    • Dong TC, Cutting SM, Lewis RJ (2004) DNA-binding studies on the Bacillus subtilis transcriptional regulator and AbrB homologue, SpoVT. FEMS Microbiol Lett 233(2):247-256. doi:10.1016/j.femsle.2004.02.013
    • (2004) FEMS Microbiol Lett , vol.233 , Issue.2 , pp. 247-256
    • Dong, T.C.1    Cutting, S.M.2    Lewis, R.J.3
  • 30
    • 0041924004 scopus 로고    scopus 로고
    • Growth in sulfidic mineral environments: Metal resistance mechanisms in acidophilic micro-organisms
    • Dopson M, Baker-Austin C, Koppineedi PR, Bond PL (2003) Growth in sulfidic mineral environments: metal resistance mechanisms in acidophilic micro-organisms. Microbiology 149(Pt 8):1959-1970
    • (2003) Microbiology , vol.149 , Issue.PART 8 , pp. 1959-1970
    • Dopson, M.1    Baker-Austin, C.2    Koppineedi, P.R.3    Bond, P.L.4
  • 32
    • 0034864223 scopus 로고    scopus 로고
    • The evolution of bacterial LuxI and LuxR quorum sensing regulators
    • Gray KM, Garey JR (2001) The evolution of bacterial LuxI and LuxR quorum sensing regulators. Microbiology 147(Pt 8):2379-2387
    • (2001) Microbiology , vol.147 , Issue.PART 8 , pp. 2379-2387
    • Gray, K.M.1    Garey, J.R.2
  • 33
    • 0030028140 scopus 로고    scopus 로고
    • Repression of the Escherichia coli modABCD (molybdate transport) operon by ModE
    • Grunden AM, Ray RM, Rosentel JK, Healy FG, Shanmugam KT (1996) Repression of the Escherichia coli modABCD (molybdate transport) operon by ModE. J Bacteriol 178(3):735-744
    • (1996) J Bacteriol , vol.178 , Issue.3 , pp. 735-744
    • Grunden, A.M.1    Ray, R.M.2    Rosentel, J.K.3    Healy, F.G.4    Shanmugam, K.T.5
  • 35
    • 2442435703 scopus 로고    scopus 로고
    • Identification of AbrB-regulated genes involved in biofilm formation by Bacillus subtilis
    • doi:10.1111/j.1365-2958.2004.04023.x
    • Hamon MA, Stanley NR, Britton RA, Grossman AD, Lazazzera BA (2004) Identification of AbrB-regulated genes involved in biofilm formation by Bacillus subtilis. Mol Microbiol 52(3):847-860. doi:10.1111/j.1365-2958.2004.04023.x
    • (2004) Mol Microbiol , vol.52 , Issue.3 , pp. 847-860
    • Hamon, M.A.1    Stanley, N.R.2    Britton, R.A.3    Grossman, A.D.4    Lazazzera, B.A.5
  • 36
    • 33750369354 scopus 로고    scopus 로고
    • Testing statistical significance scores of sequence comparison methods with structure similarity
    • doi:10.1186/1471-2105-7-444
    • Hulsen T, de Vlieg J, Leunissen JA, Groenen PM (2006) Testing statistical significance scores of sequence comparison methods with structure similarity. BMC Bioinform 12(7):444. doi:10.1186/1471-2105-7-444
    • (2006) BMC Bioinform , vol.12 , Issue.7 , pp. 444
    • Hulsen, T.1    De Vlieg, J.2    Leunissen, J.A.3    Groenen, P.M.4
  • 37
    • 24744435511 scopus 로고    scopus 로고
    • A design for life: Prokaryotic metal-binding MerR family regulators
    • doi:10.1007/s10534-005-3717-7
    • Hobman JL, Wilkie J, Brown NL (2005) A design for life: prokaryotic metal-binding MerR family regulators. Biometals 18(4):429-436. doi:10.1007/s10534-005-3717-7
    • (2005) Biometals , vol.18 , Issue.4 , pp. 429-436
    • Hobman, J.L.1    Wilkie, J.2    Brown, N.L.3
  • 38
    • 0024834563 scopus 로고
    • Nucleotide sequence of the Thiobacillus ferrooxidans chromosomal gene encoding mercuric reductase
    • doi:10.1016/0378-1119(89)90138-8
    • Inoue C, Sugawara K, Shiratori T, Kusano T, Kitagawa Y (1989) Nucleotide sequence of the Thiobacillus ferrooxidans chromosomal gene encoding mercuric reductase. Gene 84(1):47-54. doi:10.1016/0378-1119(89)90138-8
    • (1989) Gene , vol.84 , Issue.1 , pp. 47-54
    • Inoue, C.1    Sugawara, K.2    Shiratori, T.3    Kusano, T.4    Kitagawa, Y.5
  • 39
    • 0025930766 scopus 로고
    • The merR regulatory gene in Thiobacillus ferrooxidans is spaced apart from the mer structural genes
    • Inoue C, Sugawara K, Kusano T (1991) The merR regulatory gene in Thiobacillus ferrooxidans is spaced apart from the mer structural genes. Mol Microbiol 5(11):2707-2718
    • (1991) Mol Microbiol , vol.5 , Issue.11 , pp. 2707-2718
    • Inoue, C.1    Sugawara, K.2    Kusano, T.3
  • 40
    • 0030221767 scopus 로고    scopus 로고
    • Mercuric ion uptake by Escherichia coli cells producing Thiobacillus ferrooxidans merC
    • Inoue C, Kusano T, Silver S (1996) Mercuric ion uptake by Escherichia coli cells producing Thiobacillus ferrooxidans merC. Biosci Biotechnol Biochem 60(8):1289-1292
    • (1996) Biosci Biotechnol Biochem , vol.60 , Issue.8 , pp. 1289-1292
    • Inoue, C.1    Kusano, T.2    Silver, S.3
  • 41
    • 66849125755 scopus 로고    scopus 로고
    • Genetic makeup of the Corynebacterium glutamicum LexA regulon deduced from comparative transcriptomics and in vitro DNA band shift assays
    • doi:10.1099/mic.0.025841-0
    • Jochmann N, Kurze AK, Czaja LF, Brinkrolf K, Brune I, Huser AT, Hansmeier N, Puhler A, Borovok I, Tauch A (2009) Genetic makeup of the Corynebacterium glutamicum LexA regulon deduced from comparative transcriptomics and in vitro DNA band shift assays. Microbiology 155(Pt 5):1459-1477. doi:10.1099/mic.0. 025841-0
    • (2009) Microbiology , vol.155 , Issue.PART 5 , pp. 1459-1477
    • Jochmann, N.1    Kurze, A.K.2    Czaja, L.F.3    Brinkrolf, K.4    Brune, I.5    Huser, A.T.6    Hansmeier, N.7    Puhler, A.8    Borovok, I.9    Tauch, A.10
  • 42
    • 0025305924 scopus 로고
    • Constitutive synthesis of a transport function encoded by the Thiobacillus ferrooxidans merC gene cloned in Escherichia coli
    • Kusano T, Ji GY, Inoue C, Silver S (1990) Constitutive synthesis of a transport function encoded by the Thiobacillus ferrooxidans merC gene cloned in Escherichia coli. J Bacteriol 172(5):2688-2692
    • (1990) J Bacteriol , vol.172 , Issue.5 , pp. 2688-2692
    • Kusano, T.1    Ji, G.Y.2    Inoue, C.3    Silver, S.4
  • 43
    • 1942469383 scopus 로고    scopus 로고
    • The evolutionary history of quorum-sensing systems in bacteria
    • doi:10.1093/molbev/msh097
    • Lerat E, Moran NA (2004) The evolutionary history of quorum-sensing systems in bacteria. Mol Biol Evol 21(5): 903-913. doi:10.1093/molbev/msh097
    • (2004) Mol Biol Evol , vol.21 , Issue.5 , pp. 903-913
    • Lerat, E.1    Moran, N.A.2
  • 45
    • 0034538977 scopus 로고    scopus 로고
    • The quality of merC, a module of the mer mosaic
    • doi:10.1007/s002390010124
    • Liebert CA, Watson AL, Summers AO (2000) The quality of merC, a module of the mer mosaic. J Mol Evol 51(6): 607-622. doi:10.1007/s002390010124
    • (2000) J Mol Evol , vol.51 , Issue.6 , pp. 607-622
    • Liebert, C.A.1    Watson, A.L.2    Summers, A.O.3
  • 46
    • 0019590730 scopus 로고
    • Purified lexA protein is a repressor of the recA and lexA genes
    • Little JW, Mount DW, Yanisch-Perron CR (1981) Purified lexA protein is a repressor of the recA and lexA genes. Proc Natl Acad Sci USA 78(7):4199-4203
    • (1981) Proc Natl Acad Sci USA , vol.78 , Issue.7 , pp. 4199-4203
    • Little, J.W.1    Mount, D.W.2    Yanisch-Perron, C.R.3
  • 48
    • 33746207758 scopus 로고    scopus 로고
    • Bacterial regulatory networks are extremely flexible in evolution
    • Lozada-Chavez I, Janga SC, Collado-Vides J (2006) Bacterial regulatory networks are extremely flexible in evolution. Nucleic Acids Res 34(12):3434-3445
    • (2006) Nucleic Acids Res , vol.34 , Issue.12 , pp. 3434-3445
    • Lozada-Chavez, I.1    Janga, S.C.2    Collado-Vides, J.3
  • 49
    • 0032766490 scopus 로고    scopus 로고
    • Comparative genomics of the Archaea (Euryarchaeota): Evolution of conserved protein families, the stable core, and the variable shell
    • Makarova KS, Aravind L, Galperin MY, Grishin NV, Tatusov RL, Wolf YI, Koonin EV (1999) Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell. Genome Res 9(7):608-628
    • (1999) Genome Res , vol.9 , Issue.7 , pp. 608-628
    • Makarova, K.S.1    Aravind, L.2    Galperin, M.Y.3    Grishin, N.V.4    Tatusov, R.L.5    Wolf, Y.I.6    Koonin, E.V.7
  • 50
    • 33846319411 scopus 로고    scopus 로고
    • The dimeric repressor SoxR binds cooperatively to the promoter( s) regulating expression of the sulfur oxidation (sox) operon of Pseudaminobacter salicylatoxidans KCT001
    • doi:10.1099/mic.0.291 97-0
    • Mandal S, Chatterjee S,DamB, Roy P, Das GuptaSK(2007) The dimeric repressor SoxR binds cooperatively to the promoter( s) regulating expression of the sulfur oxidation (sox) operon of Pseudaminobacter salicylatoxidans KCT001. Microbiology 153(Pt 1):80-91. doi:10.1099/mic.0.291 97-0
    • (2007) Microbiology , vol.153 , Issue.PART 1 , pp. 80-91
    • Mandal, S.1    Chatterjee, S.2    Dam, B.3    Roy, P.4    Guptask, D.5
  • 52
    • 0034770056 scopus 로고    scopus 로고
    • Quorum sensing in bacteria
    • doi:10.1146/annurev. micro.55.1.165
    • Miller MB, Bassler BL (2001) Quorum sensing in bacteria. Annu Rev Microbiol 55:165-199. doi:10.1146/annurev. micro.55.1.165
    • (2001) Annu Rev Microbiol , vol.55 , pp. 165-199
    • Miller, M.B.1    Bassler, B.L.2
  • 53
    • 33646596266 scopus 로고    scopus 로고
    • Genome-wide survey of transcription factors in prokaryotes reveals many bacteria-specific families not found in archaea
    • doi:10.1093/dnares/dsi016
    • Minezaki Y, Homma K, Nishikawa K (2005) Genome-wide survey of transcription factors in prokaryotes reveals many bacteria-specific families not found in archaea. DNA Res 12(5):269-280. doi:10.1093/dnares/dsi016
    • (2005) DNA Res , vol.12 , Issue.5 , pp. 269-280
    • Minezaki, Y.1    Homma, K.2    Nishikawa, K.3
  • 54
    • 33747586510 scopus 로고    scopus 로고
    • Improving the accuracy of protein secondary structure prediction using structural alignment
    • doi:10.1186/1471-2105-7-301
    • Montgomerie S, Sundararaj S, Gallin WJ, Wishart DS (2006) Improving the accuracy of protein secondary structure prediction using structural alignment. BMC Bioinform 7:301. doi:10.1186/1471-2105-7-301
    • (2006) BMC Bioinform , vol.7 , pp. 301
    • Montgomerie, S.1    Sundararaj, S.2    Gallin, W.J.3    Wishart, D.S.4
  • 55
    • 33748679406 scopus 로고    scopus 로고
    • Identification and analysis of DNA-binding transcription factors in Bacillus subtilis and other Firmicutes - A genomic approach
    • doi:10.1186/ 1471-2164-7-147
    • Moreno-Campuzano S, Janga SC, Perez-Rueda E (2006) Identification and analysis of DNA-binding transcription factors in Bacillus subtilis and other Firmicutes-a genomic approach. BMC Genomics 7:147. doi:10.1186/ 1471-2164-7-147
    • (2006) BMC Genomics , vol.7 , pp. 147
    • Moreno-Campuzano, S.1    Janga, S.C.2    Perez-Rueda, E.3
  • 56
    • 0025998801 scopus 로고
    • Purification and functional characterization of MerD. A coregulator of the mercury resistance operon in gramnegative bacteria
    • Mukhopadhyay D, Yu HR, Nucifora G, Misra TK (1991) Purification and functional characterization of MerD. A coregulator of the mercury resistance operon in gramnegative bacteria. J Biol Chem 266(28):18538-18542
    • (1991) J Biol Chem , vol.266 , Issue.28 , pp. 18538-18542
    • Mukhopadhyay, D.1    Yu, H.R.2    Nucifora, G.3    Misra, T.K.4
  • 57
    • 75549085495 scopus 로고    scopus 로고
    • EggNOG v2.0: Extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations
    • doi:10.1093/nar/gkp951
    • Muller J, Szklarczyk D, Julien P, Letunic I, Roth A, Kuhn M, Powell S, von Mering C, Doerks T, Jensen LJ, Bork P (2010) eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations. Nucleic Acids Res 38(Database):D190-D195. doi:10.1093/nar/gkp951
    • (2010) Nucleic Acids Res , vol.38
    • Muller, J.1    Szklarczyk, D.2    Julien, P.3    Letunic, I.4    Roth, A.5    Kuhn, M.6    Powell, S.7    Von Mering, C.8    Doerks, T.9    Jensen, L.J.10    Bork, P.11
  • 58
    • 70349427115 scopus 로고    scopus 로고
    • Transcriptional and functional studies of Acidithiobacillus ferrooxidans genes related to survival in the presence of copper
    • doi: 10.1128/AEM.00308-09
    • Navarro CA, Orellana LH, Mauriaca C, Jerez CA (2009) Transcriptional and functional studies of Acidithiobacillus ferrooxidans genes related to survival in the presence of copper. Appl Environ Microbiol 75(19):6102-6109. doi: 10.1128/AEM.00308-09
    • (2009) Appl Environ Microbiol , vol.75 , Issue.19 , pp. 6102-6109
    • Navarro, C.A.1    Orellana, L.H.2    Mauriaca, C.3    Jerez, C.A.4
  • 59
    • 0029845913 scopus 로고    scopus 로고
    • Multidrug efflux pumps of gram-negative bacteria
    • Nikaido H (1996) Multidrug efflux pumps of gram-negative bacteria. J Bacteriol 178(20):5853-5859
    • (1996) J Bacteriol , vol.178 , Issue.20 , pp. 5853-5859
    • Nikaido, H.1
  • 60
    • 0024802568 scopus 로고
    • Down regulation of the mercury resistance operon by the most promoter-distal gene merD
    • Nucifora G, Silver S, Misra TK (1989) Down regulation of the mercury resistance operon by the most promoter-distal gene merD. Mol Gen Genet 220(1):69-72
    • (1989) Mol Gen Genet , vol.220 , Issue.1 , pp. 69-72
    • Nucifora, G.1    Silver, S.2    Misra, T.K.3
  • 61
    • 0242668356 scopus 로고    scopus 로고
    • Enumeration and characterization of acidophilic microorganisms isolated from a pilot plant stirred-tank bioleaching operation
    • Okibe N, Gericke M, Hallberg KB, Johnson DB (2003) Enumeration and characterization of acidophilic microorganisms isolated from a pilot plant stirred-tank bioleaching operation. Appl Environ Microbiol 69(4):1936-1943
    • (2003) Appl Environ Microbiol , vol.69 , Issue.4 , pp. 1936-1943
    • Okibe, N.1    Gericke, M.2    Hallberg, K.B.3    Johnson, D.B.4
  • 62
    • 26844558809 scopus 로고    scopus 로고
    • Analysis of genes involved in arsenic resistance in Corynebacterium glutamicum ATCC 13032
    • doi:10.1128/AEM.71. 10.6206-6215.2005
    • Ordonez E, Letek M, Valbuena N, Gil JA, Mateos LM (2005) Analysis of genes involved in arsenic resistance in Corynebacterium glutamicum ATCC 13032. Appl Environ Microbiol 71(10):6206-6215. doi:10.1128/AEM.71. 10.6206-6215.2005
    • (2005) Appl Environ Microbiol , vol.71 , Issue.10 , pp. 6206-6215
    • Ordonez, E.1    Letek, M.2    Valbuena, N.3    Gil, J.A.4    Mateos, L.M.5
  • 63
  • 65
    • 79251535005 scopus 로고    scopus 로고
    • The Lrp family of transcription regulators in archaea
    • doi:10.1155/ 2010/750457
    • Peeters E, Charlier D (2010) The Lrp family of transcription regulators in archaea. Archaea 2010:750457. doi:10.1155/ 2010/750457
    • (2010) Archaea , vol.2010 , pp. 750457
    • Peeters, E.1    Charlier, D.2
  • 66
    • 24944453275 scopus 로고    scopus 로고
    • Structural determinants of metal selectivity in prokaryotic metal-responsive transcriptional regulators
    • doi: 10.1007/s10534-005-3716-8
    • Pennella MA, Giedroc DP (2005) Structural determinants of metal selectivity in prokaryotic metal-responsive transcriptional regulators. Biometals 18(4):413-428. doi: 10.1007/s10534-005-3716-8
    • (2005) Biometals , vol.18 , Issue.4 , pp. 413-428
    • Pennella, M.A.1    Giedroc, D.P.2
  • 67
    • 0343963178 scopus 로고    scopus 로고
    • The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12
    • doi: 10.1016/j.compbiolchem.2004.09.004
    • Perez-Rueda E, Collado-Vides J (2000) The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12. Nucleic Acids Res 28(8):1838-1847. doi: 10.1016/j.compbiolchem.2004.09.004
    • (2000) Nucleic Acids Res , vol.28 , Issue.8 , pp. 1838-1847
    • Perez-Rueda, E.1    Collado-Vides, J.2
  • 68
    • 77952805130 scopus 로고    scopus 로고
    • Identification and genomic analysis of transcription factors in archaeal genomes exemplifies their functional architecture and evolutionary origin
    • doi:10.1093/ molbev/msq033
    • Perez-Rueda E, Janga SC (2010) Identification and genomic analysis of transcription factors in archaeal genomes exemplifies their functional architecture and evolutionary origin. Mol Biol Evol 27(6):1449-1459. doi:10.1093/ molbev/msq033
    • (2010) Mol Biol Evol , vol.27 , Issue.6 , pp. 1449-1459
    • Perez-Rueda, E.1    Janga, S.C.2
  • 69
    • 9544237144 scopus 로고    scopus 로고
    • Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea
    • Perez-Rueda E, Collado-Vides J, Segovia L (2004) Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Comput Biol Chem 28(5-6):341-350
    • (2004) Comput Biol Chem , vol.28 , Issue.5-6 , pp. 341-350
    • Perez-Rueda, E.1    Collado-Vides, J.2    Segovia, L.3
  • 70
    • 33747109579 scopus 로고    scopus 로고
    • Comparative genomics of regulation of heavy metal resistance in Eubacteria
    • doi: 10.1186/1471-2180-6-49
    • Permina EA, Kazakov AE, Kalinina OV, Gelfand MS (2006) Comparative genomics of regulation of heavy metal resistance in Eubacteria. BMC Microbiol 6:49. doi: 10.1186/1471-2180-6-49
    • (2006) BMC Microbiol , vol.6 , pp. 49
    • Permina, E.A.1    Kazakov, A.E.2    Kalinina, O.V.3    Gelfand, M.S.4
  • 71
    • 0030009730 scopus 로고    scopus 로고
    • Bacterial populations in samples of bioleached copper ore as revealed by analysis of DNA obtained before and after cultivation
    • Pizarro J, Jedlicki E, Orellana O, Romero J, Espejo RT (1996) Bacterial populations in samples of bioleached copper ore as revealed by analysis of DNA obtained before and after cultivation. Appl Environ Microbiol 62(4):1323-1328
    • (1996) Appl Environ Microbiol , vol.62 , Issue.4 , pp. 1323-1328
    • Pizarro, J.1    Jedlicki, E.2    Orellana, O.3    Romero, J.4    Espejo, R.T.5
  • 72
    • 0035087832 scopus 로고    scopus 로고
    • Multidrug efflux pumps and antimicrobial resistance in Pseudomonas aeruginosa and related organisms
    • Poole K (2001) Multidrug efflux pumps and antimicrobial resistance in Pseudomonas aeruginosa and related organisms. J Mol Microbiol Biotechnol 3(2):255-264
    • (2001) J Mol Microbiol Biotechnol , vol.3 , Issue.2 , pp. 255-264
    • Poole, K.1
  • 73
    • 34848865681 scopus 로고    scopus 로고
    • Orthologous transcription factors in bacteria have different functions and regulate different genes
    • doi:10.1371/journal.pcbi.0030175
    • Price MN, Dehal PS, Arkin AP (2007) Orthologous transcription factors in bacteria have different functions and regulate different genes. PLoS Comput Biol 3(9):1739-1750. doi:10.1371/journal.pcbi.0030175
    • (2007) PLoS Comput Biol , vol.3 , Issue.9 , pp. 1739-1750
    • Price, M.N.1    Dehal, P.S.2    Arkin, A.P.3
  • 74
    • 36349027677 scopus 로고    scopus 로고
    • Convergent evolution of a new arsenic binding site in the ArsR/SmtB family of metalloregulators
    • doi:10.1074/jbc. M706565200
    • Qin J, Fu HL, Ye J, Bencze KZ, Stemmler TL, Rawlings DE, Rosen BP (2007) Convergent evolution of a new arsenic binding site in the ArsR/SmtB family of metalloregulators. J Biol Chem 282(47):34346-34355. doi:10.1074/jbc. M706565200
    • (2007) J Biol Chem , vol.282 , Issue.47 , pp. 34346-34355
    • Qin, J.1    Fu, H.L.2    Ye, J.3    Bencze, K.Z.4    Stemmler, T.L.5    Rawlings, D.E.6    Rosen, B.P.7
  • 75
    • 21344451201 scopus 로고    scopus 로고
    • The ferric iron uptake regulator (Fur) from the extreme acidophile Acidithiobacillus ferrooxidans
    • doi:10.1099/mic.0.27581-0
    • Quatrini R, Lefimil C, Holmes DS, Jedlicki E (2005) The ferric iron uptake regulator (Fur) from the extreme acidophile Acidithiobacillus ferrooxidans. Microbiology 151(Pt 6):2005-2015. doi:10.1099/mic.0.27581-0
    • (2005) Microbiology , vol.151 , Issue.PART 6 , pp. 2005-2015
    • Quatrini, R.1    Lefimil, C.2    Holmes, D.S.3    Jedlicki, E.4
  • 77
    • 34249844266 scopus 로고    scopus 로고
    • Bioinformatic prediction and experimental verification of Fur-regulated genes in the extreme acidophile Acidithiobacillus ferrooxidans
    • doi:10.1093/nar/gkm068
    • Quatrini R, Lefimil C, Veloso FA, Pedroso I, Holmes DS, Jedlicki E (2007) Bioinformatic prediction and experimental verification of Fur-regulated genes in the extreme acidophile Acidithiobacillus ferrooxidans. Nucleic Acids Res 35(7):2153-2166. doi:10.1093/nar/gkm068
    • (2007) Nucleic Acids Res , vol.35 , Issue.7 , pp. 2153-2166
    • Quatrini, R.1    Lefimil, C.2    Veloso, F.A.3    Pedroso, I.4    Holmes, D.S.5    Jedlicki, E.6
  • 78
    • 4143137531 scopus 로고    scopus 로고
    • Differential protein expression during growth of Acidithiobacillus ferrooxidans on ferrous iron, sulfur compounds, or metal sulfides
    • doi:10.1128/AEM.70.8.4491-4498.2004
    • Ramirez P, Guiliani N, Valenzuela L, Beard S, Jerez CA (2004) Differential protein expression during growth of Acidithiobacillus ferrooxidans on ferrous iron, sulfur compounds, or metal sulfides. Appl Environ Microbiol 70(8):4491-4498. doi:10.1128/AEM.70.8.4491-4498.2004
    • (2004) Appl Environ Microbiol , vol.70 , Issue.8 , pp. 4491-4498
    • Ramirez, P.1    Guiliani, N.2    Valenzuela, L.3    Beard, S.4    Jerez, C.A.5
  • 79
    • 0036405454 scopus 로고    scopus 로고
    • Heavy metal mining using microbes
    • doi:10.1146/annurev. micro.56.012302.161052
    • Rawlings DE (2002) Heavy metal mining using microbes. Annu Rev Microbiol 56:65-91. doi:10.1146/annurev. micro.56.012302.161052
    • (2002) Annu Rev Microbiol , vol.56 , pp. 65-91
    • Rawlings, D.E.1
  • 80
    • 33847195791 scopus 로고    scopus 로고
    • The microbiology of biomining: Development and optimization of mineral-oxidizing microbial consortia
    • doi:10.1099/mic.0.2006/001206-0
    • Rawlings DE, Johnson DB (2007) The microbiology of biomining: development and optimization of mineral-oxidizing microbial consortia. Microbiology 153(Pt 2):315-324. doi:10.1099/mic.0.2006/001206-0
    • (2007) Microbiology , vol.153 , Issue.PART 2 , pp. 315-324
    • Rawlings, D.E.1    Johnson, D.B.2
  • 81
    • 0028202450 scopus 로고
    • Molecular genetics of Thiobacillus ferrooxidans
    • Rawlings DE, Kusano T (1994) Molecular genetics of Thiobacillus ferrooxidans. Microbiol Rev 58(1):39-55
    • (1994) Microbiol Rev , vol.58 , Issue.1 , pp. 39-55
    • Rawlings, D.E.1    Kusano, T.2
  • 82
    • 0035204202 scopus 로고    scopus 로고
    • Comparative biology of IncQ and IncQ-like plasmids
    • doi:10.1128/MMBR.65.4.481-496.2001
    • Rawlings DE, Tietze E (2001) Comparative biology of IncQ and IncQ-like plasmids. Microbiol Mol Biol Rev 65(4):481-496. doi:10.1128/MMBR.65.4.481-496. 2001
    • (2001) Microbiol Mol Biol Rev , vol.65 , Issue.4 , pp. 481-496
    • Rawlings, D.E.1    Tietze, E.2
  • 83
    • 20444447161 scopus 로고    scopus 로고
    • Form and function in metal-dependent transcriptional regulation: Dawn of the enlightenment
    • doi:10.1128/JB.187.12. 3909-3912.2005
    • Rensing C (2005) Form and function in metal-dependent transcriptional regulation: dawn of the enlightenment. J Bacteriol 187(12):3909-3912. doi:10.1128/JB.187.12. 3909-3912.2005
    • (2005) J Bacteriol , vol.187 , Issue.12 , pp. 3909-3912
    • Rensing, C.1
  • 84
    • 0037066712 scopus 로고    scopus 로고
    • Subdivision of the helix-turn-helix GntR family of bacterial regulators in the FadR, HutC, MocR, and YtrA subfamilies
    • doi:10.1074/jbc. M110968200
    • Rigali S, Derouaux A, Giannotta F, Dusart J (2002) Subdivision of the helix-turn-helix GntR family of bacterial regulators in the FadR, HutC, MocR, and YtrA subfamilies. J Biol Chem 277(15):12507-12515. doi:10.1074/jbc. M110968200
    • (2002) J Biol Chem , vol.277 , Issue.15 , pp. 12507-12515
    • Rigali, S.1    Derouaux, A.2    Giannotta, F.3    Dusart, J.4
  • 85
    • 1642480180 scopus 로고    scopus 로고
    • Bioleaching review, Part A: Progress in bioleaching: Fundamentals and mechanisms of bacterial metal sulfide oxidation
    • doi: 10.1007/s00253-003-1448-7
    • Rohwerder T, Gehrke T, Kinzler K, Sand W (2003) Bioleaching review, Part A: progress in bioleaching: fundamentals and mechanisms of bacterial metal sulfide oxidation. Appl Microbiol Biotechnol 63(3):239-248. doi: 10.1007/s00253-003-1448-7
    • (2003) Appl Microbiol Biotechnol , vol.63 , Issue.3 , pp. 239-248
    • Rohwerder, T.1    Gehrke, T.2    Kinzler, K.3    Sand, W.4
  • 86
    • 33845337034 scopus 로고    scopus 로고
    • Molecular modeling and characterization of Vibrio cholerae transcription regulator HlyU
    • doi:10.1186/1472-6807-6-24
    • Saha RP, Chakrabarti P (2006) Molecular modeling and characterization of Vibrio cholerae transcription regulator HlyU. BMC Struct Biol 6:24. doi:10.1186/1472-6807-6-24
    • (2006) BMC Struct Biol , vol.6 , pp. 24
    • Saha, R.P.1    Chakrabarti, P.2
  • 88
    • 0028027443 scopus 로고
    • Identification of a putative metal binding site in a new family of metalloregulatory proteins
    • Shi W, Wu J, Rosen BP (1994) Identification of a putative metal binding site in a new family of metalloregulatory proteins. J Biol Chem 269(31):19826-19829
    • (1994) J Biol Chem , vol.269 , Issue.31 , pp. 19826-19829
    • Shi, W.1    Wu, J.2    Rosen, B.P.3
  • 89
    • 44949217354 scopus 로고    scopus 로고
    • Molecular insights into quorum sensing in Acidithiobacillus ferrooxidans bacteria via molecular modelling of the transcriptional regulator AfeR and of the binding mode of long-chain acyl homoserine lactones
    • doi:10.1007/s00894-008-0315-y
    • Soulere L, Guiliani N, Queneau Y, Jerez CA, Doutheau A (2008) Molecular insights into quorum sensing in Acidithiobacillus ferrooxidans bacteria via molecular modelling of the transcriptional regulator AfeR and of the binding mode of long-chain acyl homoserine lactones. J Mol Model 14(7):599-606. doi:10.1007/s00894-008-0315-y
    • (2008) J Mol Model , vol.14 , Issue.7 , pp. 599-606
    • Soulere, L.1    Guiliani, N.2    Queneau, Y.3    Jerez, C.A.4    Doutheau, A.5
  • 91
    • 0037332383 scopus 로고    scopus 로고
    • Domain architectures of sigma54-dependent transcriptional activators
    • doi10.1128/JB.185.6.1757-1767.2003
    • Studholme DJ, Dixon R (2003) Domain architectures of sigma54-dependent transcriptional activators. J Bacteriol 185(6):1757-1767. doi10.1128/JB.185.6. 1757-1767.2003
    • (2003) J Bacteriol , vol.185 , Issue.6 , pp. 1757-1767
    • Studholme, D.J.1    Dixon, R.2
  • 92
    • 2942706117 scopus 로고    scopus 로고
    • A DNA element recognised by the molybdenum-responsive transcription factor ModE is conserved in Proteobacteria, green sulphur bacteria and Archaea
    • doi:10.1186/1471-218 0-3-24
    • Studholme DJ, Pau RN (2003) A DNA element recognised by the molybdenum-responsive transcription factor ModE is conserved in Proteobacteria, green sulphur bacteria and Archaea. BMC Microbiol 3:24. doi:10.1186/1471-218 0-3-24
    • (2003) BMC Microbiol , vol.3 , pp. 24
    • Studholme, D.J.1    Pau, R.N.2
  • 93
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • doi:10.1093/molbev/msm092
    • Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24(8):1596-1599. doi:10.1093/molbev/msm092
    • (2007) Mol Biol Evol , vol.24 , Issue.8 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 94
    • 54049108449 scopus 로고    scopus 로고
    • Multiple sequence alignment using ClustalW and ClustalX
    • doi:10.1002/047 1250953.bi0203s00 Unit 2
    • Thompson JD, Gibson TJ, Higgins DG (2002) Multiple sequence alignment using ClustalW and ClustalX. Curr Protoc Bioinform Chapter 2(Unit 2):3. doi:10.1002/047 1250953.bi0203s00
    • (2002) Curr Protoc Bioinform Chapter , vol.2 , pp. 3
    • Thompson, J.D.1    Gibson, T.J.2    Higgins, D.G.3
  • 96
    • 0033050179 scopus 로고    scopus 로고
    • The mer operon of the acidophilic bacterium Thiobacillus T3.2 divergesfrom its Thiobacillus ferrooxidans counterpart
    • Velasco A, Acebo P, Flores N, Perera J (1999) The mer operon of the acidophilic bacterium Thiobacillus T3.2 divergesfrom its Thiobacillus ferrooxidans counterpart. Extremophiles 3(1):35-43
    • (1999) Extremophiles , vol.3 , Issue.1 , pp. 35-43
    • Velasco, A.1    Acebo, P.2    Flores, N.3    Perera, J.4
  • 97
    • 40849119815 scopus 로고    scopus 로고
    • The chemolithoautotroph Acidithiobacillus ferrooxidans can survive under phosphate-limiting conditions by expressing a C-P lyase operon that allows it to grow on phosphonates
    • doi:10.1128/AEM.02101-07
    • Vera M, Pagliai F, Guiliani N, Jerez CA (2008) The chemolithoautotroph Acidithiobacillus ferrooxidans can survive under phosphate-limiting conditions by expressing a C-P lyase operon that allows it to grow on phosphonates. Appl Environ Microbiol 74(6):1829-1835. doi:10.1128/AEM.02101-07
    • (2008) Appl Environ Microbiol , vol.74 , Issue.6 , pp. 1829-1835
    • Vera, M.1    Pagliai, F.2    Guiliani, N.3    Jerez, C.A.4
  • 98
    • 0344364563 scopus 로고    scopus 로고
    • The quorum sensing negative regulators EsaR and ExpR(Ecc), homologues within the LuxR family, retain the ability to function as activators of transcription
    • von Bodman SB, Ball JK, Faini MA, Herrera CM, Minogue TD, Urbanowski ML, Stevens AM (2003) The quorum sensing negative regulators EsaR and ExpR(Ecc), homologues within the LuxR family, retain the ability to function as activators of transcription. J Bacteriol 185(23):7001-7007
    • (2003) J Bacteriol , vol.185 , Issue.23 , pp. 7001-7007
    • Von Bodman, S.B.1    Ball, J.K.2    Faini, M.A.3    Herrera, C.M.4    Minogue, T.D.5    Urbanowski, M.L.6    Stevens, A.M.7
  • 99
    • 21744460226 scopus 로고    scopus 로고
    • Structural and functional characterization of Mycobacterium tuberculosis CmtR, a PbII/CdII-sensing SmtB/ArsR metalloregulatory repressor
    • doi: 10.1021/bi050094v
    • Wang Y, Hemmingsen L, Giedroc DP (2005) Structural and functional characterization of Mycobacterium tuberculosis CmtR, a PbII/CdII-sensing SmtB/ArsR metalloregulatory repressor. Biochemistry 44(25):8976-8988. doi: 10.1021/bi050094v
    • (2005) Biochemistry , vol.44 , Issue.25 , pp. 8976-8988
    • Wang, Y.1    Hemmingsen, L.2    Giedroc, D.P.3
  • 100
    • 69249240168 scopus 로고    scopus 로고
    • Evolution of prokaryotic twocomponent systems: Insights from comparative genomics
    • doi:10.1007/s00726-009-0259-2
    • Whitworth DE, Cock PJ (2009) Evolution of prokaryotic twocomponent systems: insights from comparative genomics. Amino Acids 37(3):459-466. doi:10.1007/s00726-009-0259-2
    • (2009) Amino Acids , vol.37 , Issue.3 , pp. 459-466
    • Whitworth, D.E.1    Cock, P.J.2
  • 101
    • 78149463459 scopus 로고    scopus 로고
    • Purification and enzymatic properties of arsenic resistance protein ArsH from heterogeneous expression in e
    • doi:10.1016/S1003-6326(09)60406-4
    • Wu XL, Miao B, Han JA, Hu Q, Zeng J, Liu YD, Qiu GZ (2010) Purification and enzymatic properties of arsenic resistance protein ArsH from heterogeneous expression in E. coli BL21. Trans Nonferr Metal Soc 20(10):1987-1992. doi:10.1016/S1003-6326(09)60406-4
    • (2010) Coli BL21. Trans Nonferr Metal Soc , vol.20 , Issue.10 , pp. 1987-1992
    • Wu, X.L.1    Miao, B.2    Han, J.A.3    Hu, Q.4    Zeng, J.5    Liu, Y.D.6    Qiu, G.Z.7
  • 102
    • 0030039601 scopus 로고    scopus 로고
    • The chromosomal arsR gene of Escherichia coli encodes a trans-acting metalloregulatory protein
    • J Biol Chem 271(5):2427-2432
    • Xu C, Shi W, Rosen BP (1996) The chromosomal arsR gene of Escherichia coli encodes a trans-acting metalloregulatory protein
    • (1996) J Biol Chem , vol.271 , Issue.5 , pp. 2427-2432
    • Xu, C.1    Shi, W.2    Rosen, B.P.3
  • 103
    • 0024279303 scopus 로고
    • Positive and negative regulators for glucitol (gut) operon expression in Escherichia coli
    • doi:10.1016/0022-2836 (88)90193-3
    • Yamada M, Saier MH Jr (1988) Positive and negative regulators for glucitol (gut) operon expression in Escherichia coli. J Mol Biol 203(3):569-583. doi:10.1016/0022-2836 (88)90193-3
    • (1988) J Mol Biol , vol.203 , Issue.3 , pp. 569-583
    • Yamada, M.1
  • 104
    • 75149118347 scopus 로고    scopus 로고
    • Bidirectional best hit r-window gene clusters
    • doi: 10.1186/1471-2105-11-S1-S63
    • Zhang M, Leong HW (2010) Bidirectional best hit r-window gene clusters. BMC Bioinform 11(SUPPL. 1):S63. doi: 10.1186/1471-2105-11-S1-S63
    • (2010) BMC Bioinform , vol.11 , Issue.SUPPL. 1
    • Zhang, M.1    Leong, H.W.2


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