Evolution of metal(loid) binding sites in transcriptional regulators

Journal of Biological Chemistry

Volumn 283, Issue 37, 2008, Pages 25706-25714

  Ordóñez, Efrén ^a   Thiyagarajan, Saravanamuthu ^b   Cook, Jeremy D ^b   Stemmler, Timothy L ^b   Gil, José A ^a   Mateos, Luís M ^a   Rosen, Barry P ^b  

^a UNIVERSITY OF LEÓN   (Spain)

^b WAYNE STATE UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARSENIC; BINDING ENERGY; BIOCHEMISTRY; CADMIUM; DNA; GENES; HEAVY METALS; LEAD; LOCATION; METALLOIDS; METALS; NUCLEIC ACIDS; ORGANIC ACIDS; PROTEINS; TRANSITION METALS; ZINC; ZINC COMPOUNDS;

BACKBONE STRUCTURES; CORYNEBACTERIUM GLUTAMICUM; DNA BINDINGS; ENVIRONMENTAL PRESSURES; FAMILY MEMBERS; METAL BINDING SITES; METALLOREGULATORY PROTEINS; THIOLATES; TOXIC IONS; TRANSCRIPTIONAL REGULATORS;

BINDING SITES;

ARSENIC; BACTERIAL PROTEIN; BINDING PROTEIN; CYSTEINE; PROTEIN CGARSR1; PROTEIN CGARSR2; SULFUR DERIVATIVE; UNCLASSIFIED DRUG; ARSR PROTEIN, BACTERIA; DNA; METAL; TRANSACTIVATOR PROTEIN;

ARTICLE; BINDING SITE; CORYNEBACTERIUM GLUTAMICUM; DNA BINDING; METAL BINDING; MOLECULAR EVOLUTION; NONHUMAN; PRIORITY JOURNAL; AMINO ACID SEQUENCE; BIOLOGICAL MODEL; CHEMISTRY; CONFORMATION; DIMERIZATION; ESCHERICHIA COLI; GENETIC TRANSCRIPTION; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYSIOLOGY; PROTEIN BINDING; SEQUENCE HOMOLOGY;

CORYNEBACTERIUM GLUTAMICUM;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; BASE SEQUENCE; BINDING SITES; CORYNEBACTERIUM GLUTAMICUM; DIMERIZATION; DNA; ESCHERICHIA COLI; METALS; MODELS, BIOLOGICAL; MOLECULAR CONFORMATION; MOLECULAR SEQUENCE DATA; PROTEIN BINDING; SEQUENCE HOMOLOGY, AMINO ACID; TRANS-ACTIVATORS; TRANSCRIPTION, GENETIC;

EID: 54449094012     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M803209200     Document Type: Article

References (29)

1. Xu, C., and Rosen, B. P. (1999) in Metals and Genetics (Sarkar, B. ed) pp. 5-19, Plenum Press, New York
2. Busenlehner, L. S., Pennella, M. A., and Giedroc, D. P. (2003) FEMS Microbiol. Rev. 27, 131-143
3. Campbell, D. R., Chapman, K. E., Waldron, K. J., Tottey, S., Kendall, S., Cavallaro, G., Andreini, C., Hinds, J., Stoker, N. G., Robinson, N. J., and Cavet, J. S. (2007) J. Biol. Chem. 282, 32298-32310
4. Wu, J., and Rosen, B. P. (1993) J. Biol. Chem. 268, 52-58
5. San Francisco, M. J., Hope, C. L., Owolabi, J. B., Tisa, L. S., and Rosen, B. P. (1990) Nucleic Acids Res. 18, 619-624
6. Shi, W., Wu, J., and Rosen, B. P. (1994) J. Biol. Chem. 269, 19826-19829
7. Yoon, K. P., Misra, T. K., and Silver, S. (1991) J. Bacteriol. 173, 7643-7649
8. Wong, M. D., Lin, Y. F., and Rosen, B. P. (2002) J. Biol. Chem. 277, 40930-40936
9. Ye, J., Kandegedara, A., Martin, P., and Rosen, B. P. (2005) J. Bacteriol. 187, 4214-4221
10. Turner, J. S., Glands, P. D., Samson, A. C., and Robinson, N. J. (1996) Nucleic Acids Res. 24, 3714-3721
11. Butcher, B. G., and Rawlings, D. E. (2002) Microbiology 148, 3983-3992
12. Qin, J., Fu, H. L., Ye, J., Bencze, K. Z., Stemmler, T. L., Rawlings, D. E., and Rosen, B. P. (2007) J. Biol. Chem. 282, 34346-34355
13. Ordóñez, E., Letek, M., Valbuena, N., Gil, J. A., and Mateos, L. M. (2005) Appl. Environ. Microbiol. 71, 6206-6215
14. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
15. Fernández-González, C., Gil, J. A., Mateos, L. M., Schwarzer, A., Schäfer, A., Kalinowski, J., Puhler, A., and Martin, J. F. (1996) Appl. Microbiol. Biotechnol. 46, 554-558
16. Laemmli, U. K. (1970) Nature 227, 680-685
17. Bradford, M. M. (1976) Anal. Biochem. 72, 248-254
18. Gill, S. C., and von Hippel, P. H. (1989) Anal. Biochem. 182, 319-326
19. Ankudinov, A. L., and Rehr, J. J. (1997) Phys. Rev. B Condens. Matter 56, R1712-R1715
20. Ramírez-Solis, A., Mukopadhyay, R., Rosen, B. P., and Stemmler, T. L. (2004) Inorg. Chem. 43, 2954-2959
21. Letek, M., Valbuena, N., Ramos, A., Ordóñez, E., Gil, J. A., and Mateos, L. M. (2006) J. Bacteriol. 188, 409-423
22. Kosower, N. S., Kosower, E. M., Newton, G. L., and Ranney, H. M. (1979) Proc. Natl. Acad. Sci. U. S. A. 76, 3382-3386
23. Cook, W. J., Kar, S. R., Taylor, K. B., and Hall, L. M. (1998) J. Mol. Biol. 275, 337-346
24. Banci, L., Bertini, I., Cantini, F., Ciofi-Baffoni, S., Cavet, J. S., Dennison, C., Graham, A., Harvie, D. R., and Robinson, N. J. (2007) J. Biol. Chem. 282, 30181-30188
25. Harvie, D. R., Andreini, C., Cavallaro, G., Meng, W., Connolly, B. A., Yoshida, K., Fujita, Y., Harwood, C. R., Radford, D. S., Tottey, S., Cavet, J. S., and Robinson, N. J. (2006) Mol. Microbiol. 59, 1341-1356
26. Marti-Renom, M. A., Stuart, A. C., Fiser, A., Sanchez, R., Melo, F., and Sali, A. (2000) Annu. Rev. Biophys. Biomol. Struct. 29, 291-325
27. DeLano, W. L. (2001) The PyMOL User's Manual, DeLano Scientific, San Carlos, CA
28. Mateos, L. M., Schafer, A., Kalinowski, J., Martin, J. F., and Puhler, A. (1996) J. Bacteriol. 178, 5768-5775
29. Ramos, A., Honrubia, M. P., Valbuena, N., Vaquera, J., Mateos, L. M., and Gil, J. A. (2003) Microbiology 149, 3531-3542