-
1
-
-
33751429178
-
The evolution of two-component systems in bacteria reveals different strategies for niche adaptation
-
E Alm K Huang A Arkin 2006 The evolution of two-component systems in bacteria reveals different strategies for niche adaptation PLoS Comp Biol 2 e143
-
(2006)
PLoS Comp Biol
, vol.2
, pp. 143
-
-
Alm, E.1
Huang, K.2
Arkin, A.3
-
2
-
-
0030595328
-
Signal transduction via the multi-step phosphorelay: Not necessarily a road less traveled
-
JL Appleby JS Parkinson RB Bourret 1996 Signal transduction via the multi-step phosphorelay: not necessarily a road less traveled Cell 86 845 848
-
(1996)
Cell
, vol.86
, pp. 845-848
-
-
Appleby, J.L.1
Parkinson, J.S.2
Bourret, R.B.3
-
3
-
-
0033277365
-
Bacterial tactic responses
-
JP Armitage 1999 Bacterial tactic responses Adv Microb Physiol 41 229 289
-
(1999)
Adv Microb Physiol
, vol.41
, pp. 229-289
-
-
Armitage, J.P.1
-
4
-
-
1342279429
-
Survey of the number of two-component response regulator genes in the complete and annotated genome sequences of prokaryotes
-
MK Ashby 2004 Survey of the number of two-component response regulator genes in the complete and annotated genome sequences of prokaryotes FEMS Microbiol Lett 231 277 281
-
(2004)
FEMS Microbiol Lett
, vol.231
, pp. 277-281
-
-
Ashby, M.K.1
-
5
-
-
69249230513
-
-
Barakat M, Ortet P, Jourlin-Castelli C, Ansaldi M, Mejean V, Whitworth DE (2009) P2CS: a two-component system resource for prokaryotic signal transduction research (submitted)
-
(2009)
P2CS: A Two-component System Resource for Prokaryotic Signal Transduction Research (Submitted)
-
-
Barakat, M.1
Ortet, P.2
Jourlin-Castelli, C.3
Ansaldi, M.4
Mejean, V.5
Whitworth, D.E.6
-
6
-
-
0141941680
-
Making informed decisions: Regulatory interactions between two-component systems
-
JJE Bijlsma E Groisman 2003 Making informed decisions: regulatory interactions between two-component systems Trends Microbiol 11 359 366
-
(2003)
Trends Microbiol
, vol.11
, pp. 359-366
-
-
Bijlsma, J.J.E.1
Groisman, E.2
-
7
-
-
39149114704
-
Accurate prediction of protein-protein interactions from sequence alignments using a Bayesian method
-
L Burger E van Nimwegen 2008 Accurate prediction of protein-protein interactions from sequence alignments using a Bayesian method Mol Syst Biol 4 165
-
(2008)
Mol Syst Biol
, vol.4
, pp. 165
-
-
Burger, L.1
Van Nimwegen, E.2
-
8
-
-
11944267741
-
Evolutionary analysis of the two-component systems in Pseudomonas aeruginosa PAO1
-
Y-T Chen HY Chang CL Lu HL Peng 2004 Evolutionary analysis of the two-component systems in Pseudomonas aeruginosa PAO1 J Mol Evol 59 725 737
-
(2004)
J Mol Evol
, vol.59
, pp. 725-737
-
-
Chen, Y.-T.1
Chang, H.Y.2
Lu, C.L.3
Peng, H.L.4
-
10
-
-
35848952746
-
Evolution of prokaryotic two-component system signaling pathways: Gene fusions and fissions
-
PJA Cock DE Whitworth 2007 Evolution of prokaryotic two-component system signaling pathways: gene fusions and fissions Mol Biol Evol 24 2355 2357
-
(2007)
Mol Biol Evol
, vol.24
, pp. 2355-2357
-
-
Cock, P.J.A.1
Whitworth, D.E.2
-
11
-
-
34247884480
-
Evolution of gene overlaps: Relative reading frame bias in prokaryotic two-component system genes
-
PJA Cock DE Whitworth 2007 Evolution of gene overlaps: relative reading frame bias in prokaryotic two-component system genes J Mol Evol 64 457 462
-
(2007)
J Mol Evol
, vol.64
, pp. 457-462
-
-
Cock, P.J.A.1
Whitworth, D.E.2
-
14
-
-
0032911313
-
Two-component signal transduction in Bacillus subtilis: How one organism sees its world
-
C Fabret VA Feher JA Hoch 1999 Two-component signal transduction in Bacillus subtilis: how one organism sees its world J Bacteriol 181 1975 1983
-
(1999)
J Bacteriol
, vol.181
, pp. 1975-1983
-
-
Fabret, C.1
Feher, V.A.2
Hoch, J.A.3
-
15
-
-
23944523895
-
A census of membrane-bound and intracellular signal transduction proteins in bacteria: Bacterial IQ, extroverts and introverts
-
MY Galperin 2005 A census of membrane-bound and intracellular signal transduction proteins in bacteria: bacterial IQ, extroverts and introverts BMC Microbiol 5 35
-
(2005)
BMC Microbiol
, vol.5
, pp. 35
-
-
Galperin, M.Y.1
-
16
-
-
33744983969
-
Structural classification of bacterial response regulators: Diversity of output domains and domain combinations
-
MY Galperin 2006 Structural classification of bacterial response regulators: diversity of output domains and domain combinations J Bacteriol 188 4169 4182
-
(2006)
J Bacteriol
, vol.188
, pp. 4169-4182
-
-
Galperin, M.Y.1
-
17
-
-
34248205790
-
Bacterial response regulators: Versatile regulatory strategies from common domains
-
R Gao TR Mack AM Stock 2007 Bacterial response regulators: versatile regulatory strategies from common domains Trends Biochem Sci 32 225 234
-
(2007)
Trends Biochem Sci
, vol.32
, pp. 225-234
-
-
Gao, R.1
MacK, T.R.2
Stock, A.M.3
-
18
-
-
0033277340
-
The histidine protein kinase superfamily
-
TW Grebe JB Stock 1999 The histidine protein kinase superfamily Adv Microb Physiol 41 139 227
-
(1999)
Adv Microb Physiol
, vol.41
, pp. 139-227
-
-
Grebe, T.W.1
Stock, J.B.2
-
19
-
-
28044441091
-
Four unusual two-component signal transduction homologs, RedC-RedF, are necessary for timely development in Myxococcus xanthus
-
PI Higgs K Cho LS Evans DE Whitworth DR Zusman 2005 Four unusual two-component signal transduction homologs, RedC-RedF, are necessary for timely development in Myxococcus xanthus J Bacteriol 187 8191 8195
-
(2005)
J Bacteriol
, vol.187
, pp. 8191-8195
-
-
Higgs, P.I.1
Cho, K.2
Evans, L.S.3
Whitworth, D.E.4
Zusman, D.R.5
-
20
-
-
44349152438
-
The importance of the Rcs phosphorelay in the survival and pathogenesis of the enteropathogenic yersiniae
-
SJ Hinchliffe SL Howard YH Huang DJ Clarke BW Wren 2008 The importance of the Rcs phosphorelay in the survival and pathogenesis of the enteropathogenic yersiniae Microbiology 154 1117 1131
-
(2008)
Microbiology
, vol.154
, pp. 1117-1131
-
-
Hinchliffe, S.J.1
Howard, S.L.2
Huang, Y.H.3
Clarke, D.J.4
Wren, B.W.5
-
21
-
-
0034879819
-
Keeping signals straight in phosphorelay signal transduction
-
JA Hoch KI Varughese 2001 Keeping signals straight in phosphorelay signal transduction J Bacteriol 183 4941 4949
-
(2001)
J Bacteriol
, vol.183
, pp. 4941-4949
-
-
Hoch, J.A.1
Varughese, K.I.2
-
22
-
-
4844230017
-
Sensing and responding to diverse extracellular signals? Analysis of the histidine kinases and response regulators of Streptomyces coelicolor A3(2)
-
MI Hutchings PA Hoskisson G Chandra MJ Buttner 2004 Sensing and responding to diverse extracellular signals? Analysis of the histidine kinases and response regulators of Streptomyces coelicolor A3(2) Microbiology 150 2795 2806
-
(2004)
Microbiology
, vol.150
, pp. 2795-2806
-
-
Hutchings, M.I.1
Hoskisson, P.A.2
Chandra, G.3
Buttner, M.J.4
-
23
-
-
0035019043
-
Genomic analysis of the histidine kinase family in bacteria and archaea
-
D-J Kim S Forst 2001 Genomic analysis of the histidine kinase family in bacteria and archaea Microbiology 147 1197 1212 (Pubitemid 32454638)
-
(2001)
Microbiology
, vol.147
, Issue.5
, pp. 1197-1212
-
-
Kim, D.-J.1
Forst, S.2
-
25
-
-
0032793852
-
Selfish operons: The evolutionary impact of gene clustering in prokaryotes and eukaryotes
-
J Lawrence 1999 Selfish operons: the evolutionary impact of gene clustering in prokaryotes and eukaryotes Curr Opin Genet Dev 9 642 648
-
(1999)
Curr Opin Genet Dev
, vol.9
, pp. 642-648
-
-
Lawrence, J.1
-
26
-
-
33747621641
-
Phosphate acquisition genes in Prochlorococcus ecotypes: Evidence for genome-wide adaptation
-
AC Martiny ML Coleman SW Chisholm 2006 Phosphate acquisition genes in Prochlorococcus ecotypes: evidence for genome-wide adaptation Proc Natl Acad Sci USA 103 12552 12557
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 12552-12557
-
-
Martiny, A.C.1
Coleman, M.L.2
Chisholm, S.W.3
-
27
-
-
69249222264
-
-
R.L. Charlebois (eds) ASM Press Washington
-
Michel B (1999) Illegitimate recombination in bacteria. In: Charlebois RL (ed) Organization of the prokaryotic genome. ASM Press, Washington, pp 129-150
-
(1999)
Illegitimate Recombination in Bacteria
, pp. 129-150
-
-
Michel, B.1
-
28
-
-
0031589010
-
Compilation of all genes encoding two-component phosphotransfer signal transducers in the genome of Escherichia coli
-
T Mizuno 1997 Compilation of all genes encoding two-component phosphotransfer signal transducers in the genome of Escherichia coli DNA Res 4 161 168
-
(1997)
DNA Res
, vol.4
, pp. 161-168
-
-
Mizuno, T.1
-
29
-
-
0030608407
-
Compilation of all genes encoding bacterial two-component signal transducers in the genome of the cyanobacterium, Synechocystis sp. strain PCC 6803
-
T Mizuno T Kaneko S Tabata 1996 Compilation of all genes encoding bacterial two-component signal transducers in the genome of the cyanobacterium, Synechocystis sp. strain PCC 6803 DNA Res 3 407 414
-
(1996)
DNA Res
, vol.3
, pp. 407-414
-
-
Mizuno, T.1
Kaneko, T.2
Tabata, S.3
-
30
-
-
0037315038
-
Role of two novel two-component regulatory systems in development and phosphatase expression in Myxococcus xanthus
-
A Moraleda-Muñoz J Carrero-Lérida J Pérez J Muñoz-Dorado 2003 Role of two novel two-component regulatory systems in development and phosphatase expression in Myxococcus xanthus J Bacteriol 185 1376 1383
-
(2003)
J Bacteriol
, vol.185
, pp. 1376-1383
-
-
Moraleda-Muñoz, A.1
Carrero-Lérida, J.2
Pérez, J.3
Muñoz-Dorado, J.4
-
31
-
-
0028955458
-
Response regulators of bacterial signal transduction systems: Selective domain shuffling during evolution
-
GM Pao MH Saier Jr 1995 Response regulators of bacterial signal transduction systems: selective domain shuffling during evolution J Mol Evol 40 136 154
-
(1995)
J Mol Evol
, vol.40
, pp. 136-154
-
-
Pao, G.M.1
Saier Jr, M.H.2
-
32
-
-
38349168381
-
Two-component signal transduction systems of Xanthomonas spp.: A lesson from genomics
-
W Qian Z-J Han C He 2008 Two-component signal transduction systems of Xanthomonas spp.: a lesson from genomics Mol Plant-Microbe Interact 21 151 161
-
(2008)
Mol Plant-Microbe Interact
, vol.21
, pp. 151-161
-
-
Qian, W.1
Han, Z.-J.2
He, C.3
-
33
-
-
0033887436
-
A tale of two components: A novel kinase and a regulatory switch
-
VL Robinson DR Buckler AM Stock 2000 A tale of two components: a novel kinase and a regulatory switch Nat Struct Biol 7 626 633
-
(2000)
Nat Struct Biol
, vol.7
, pp. 626-633
-
-
Robinson, V.L.1
Buckler, D.R.2
Stock, A.M.3
-
34
-
-
26444481955
-
Two-component signal transduction pathways regulating growth and cell cycle progression in a bacterium: A system-level analysis
-
JM Skerker MS Prasol BS Perchuk EG Biondi MT Laub 2005 Two-component signal transduction pathways regulating growth and cell cycle progression in a bacterium: a system-level analysis PLoS Biol 3 e334
-
(2005)
PLoS Biol
, vol.3
, pp. 334
-
-
Skerker, J.M.1
Prasol, M.S.2
Perchuk, B.S.3
Biondi, E.G.4
Laub, M.T.5
-
35
-
-
44649153450
-
Rewiring the specificity of two-component signal transduction systems
-
JM Skerker BS Perchuk A Siryaporn, et al. 2008 Rewiring the specificity of two-component signal transduction systems Cell 133 1043 1054
-
(2008)
Cell
, vol.133
, pp. 1043-1054
-
-
Skerker, J.M.1
Perchuk, B.S.2
Siryaporn, A.3
-
36
-
-
0036427575
-
Evolution of signalling in the sporulation phosphorelay
-
K Stephenson JA Hoch 2002 Evolution of signalling in the sporulation phosphorelay Mol Microbiol 46 297 304
-
(2002)
Mol Microbiol
, vol.46
, pp. 297-304
-
-
Stephenson, K.1
Hoch, J.A.2
-
37
-
-
1642309791
-
Developing inhibitors to selectively target two-component and phosphorelay signal transduction systems of pathogenic microorganisms
-
K Stephenson JA Hoch 2004 Developing inhibitors to selectively target two-component and phosphorelay signal transduction systems of pathogenic microorganisms Curr Med Chem 11 765 773
-
(2004)
Curr Med Chem
, vol.11
, pp. 765-773
-
-
Stephenson, K.1
Hoch, J.A.2
-
38
-
-
15944418972
-
Molecular insights into the initiation of sporulation in Gram-positive bacteria: New technologies for an old phenomenon
-
K Stephenson RJ Lewis 2005 Molecular insights into the initiation of sporulation in Gram-positive bacteria: new technologies for an old phenomenon FEMS Microbiol Rev 29 281 301
-
(2005)
FEMS Microbiol Rev
, vol.29
, pp. 281-301
-
-
Stephenson, K.1
Lewis, R.J.2
-
39
-
-
0024398149
-
Protein phosphorylation and regulation of adaptive responses in bacteria
-
JB Stock AJ Ninfa AM Stock 1989 Protein phosphorylation and regulation of adaptive responses in bacteria Microbiol Rev 53 450 490
-
(1989)
Microbiol Rev
, vol.53
, pp. 450-490
-
-
Stock, J.B.1
Ninfa, A.J.2
Stock, A.M.3
-
40
-
-
47249133791
-
Two variable active site residues modulate response regulator phosphoryl group stability
-
SA Thomas JA Brewster RB Bourret 2008 Two variable active site residues modulate response regulator phosphoryl group stability Mol Microbiol 69 453 465
-
(2008)
Mol Microbiol
, vol.69
, pp. 453-465
-
-
Thomas, S.A.1
Brewster, J.A.2
Bourret, R.B.3
-
41
-
-
20844459662
-
Genetic variations in the pgm locus among natural isolates of Yersinia pestis
-
ZZ Tong DS Zhou YJ Song, et al. 2005 Genetic variations in the pgm locus among natural isolates of Yersinia pestis J Gen Appl Microbiol 51 11 19
-
(2005)
J Gen Appl Microbiol
, vol.51
, pp. 11-19
-
-
Tong, Z.Z.1
Zhou, D.S.2
Song, Y.J.3
-
42
-
-
33846090559
-
MiST: A microbial signal transduction database
-
LE Ulrich IB Zhulin 2007 MiST: a microbial signal transduction database Nucleic Acids Res 35 D386 D390
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Ulrich, L.E.1
Zhulin, I.B.2
-
43
-
-
12944325784
-
One-component systems dominate signal transduction in prokaryotes
-
LE Ulrich EV Koonin IB Zhulin 2005 One-component systems dominate signal transduction in prokaryotes Trends Microbiol 31 52 56
-
(2005)
Trends Microbiol
, vol.31
, pp. 52-56
-
-
Ulrich, L.E.1
Koonin, E.V.2
Zhulin, I.B.3
-
45
-
-
63049131978
-
The atypical hybrid histidine protein kinase RodK in Myxococcus xanthus: Spatial proximity supersedes kinetic preference in phosphotransfer reactions
-
press doi: 10.1128/JB.01405-08
-
Wegener-Feldbrügge S, Søgaard-Andersen L (2009) The atypical hybrid histidine protein kinase RodK in Myxococcus xanthus: spatial proximity supersedes kinetic preference in phosphotransfer reactions. J Bacteriol (in press) doi: 10.1128/JB.01405-08
-
(2009)
J Bacteriol
-
-
Wegener-Feldbrügge, S.1
-
46
-
-
58549114185
-
Identification of direct residue contacts in protein-protein interaction by message passing
-
M Weigt RA White H Szurmant JA Hoch T Hwa 2009 Identification of direct residue contacts in protein-protein interaction by message passing Proc Natl Acad Sci USA 106 67 72
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 67-72
-
-
Weigt, M.1
White, R.A.2
Szurmant, H.3
Hoch, J.A.4
Hwa, T.5
-
47
-
-
54849405496
-
Genomes and knowledge-a questionable relationship?
-
DE Whitworth 2008 Genomes and knowledge-a questionable relationship? Trends Microbiol 16 512 519
-
(2008)
Trends Microbiol
, vol.16
, pp. 512-519
-
-
Whitworth, D.E.1
-
48
-
-
39749107380
-
Two-component systems of the myxobacteria: Structure, diversity and evolutionary relationships
-
DE Whitworth PJA Cock 2008 Two-component systems of the myxobacteria: structure, diversity and evolutionary relationships Microbiology 154 360 372
-
(2008)
Microbiology
, vol.154
, pp. 360-372
-
-
Whitworth, D.E.1
Cock, P.J.A.2
-
50
-
-
40449093941
-
P-acquisition components of the Myxococcus xanthus Pho regulon are regulated by both P-availability and development
-
DE Whitworth AB Holmes AG Irvine DA Hodgson DJ Scanlan 2008 P-acquisition components of the Myxococcus xanthus Pho regulon are regulated by both P-availability and development J Bacteriol 190 1997 2003
-
(2008)
J Bacteriol
, vol.190
, pp. 1997-2003
-
-
Whitworth, D.E.1
Holmes, A.B.2
Irvine, A.G.3
Hodgson, D.A.4
Scanlan, D.J.5
-
51
-
-
43549104711
-
Protein-protein interactions between two-component system transmitter and receiver domains of Myxococcus xanthus
-
DE Whitworth A Millard DA Hodgson PF Hawkins 2008 Protein-protein interactions between two-component system transmitter and receiver domains of Myxococcus xanthus Proteomics 8 1839 1842
-
(2008)
Proteomics
, vol.8
, pp. 1839-1842
-
-
Whitworth, D.E.1
Millard, A.2
Hodgson, D.A.3
Hawkins, P.F.4
-
52
-
-
22144475428
-
Distribution and evolution of multiple-step phosphorelay in prokaryotes: Lateral domain recruitment involved in the formation of hybrid-type histidine kinases
-
W Zhang L Shi 2005 Distribution and evolution of multiple-step phosphorelay in prokaryotes: lateral domain recruitment involved in the formation of hybrid-type histidine kinases Microbiology 151 2159 2173
-
(2005)
Microbiology
, vol.151
, pp. 2159-2173
-
-
Zhang, W.1
Shi, L.2
-
53
-
-
35348833523
-
Chemosensory pathways, motility and development in Myxococcus xanthus
-
DR Zusman AE Scott Z Yang JR Kirby 2007 Chemosensory pathways, motility and development in Myxococcus xanthus Nat Rev Microbiol 5 862 872
-
(2007)
Nat Rev Microbiol
, vol.5
, pp. 862-872
-
-
Zusman, D.R.1
Scott, A.E.2
Yang, Z.3
Kirby, J.R.4
|