Identification of variable regions in the genomes of tubercle bacilli using bacterial artificial chromosome arrays

Molecular Microbiology

Volumn 32, Issue 3, 1999, Pages 643-655

  Gordon, Stephen V ^a   Brosch, Roland ^a   Billault, Alain ^b   Garnier, Thierry ^a   Eiglmeier, Karin ^a   Cole, Stewart T ^a  

^a INSTITUT PASTEUR   (France)

^b Ctr d'Etud du Polymorphisme Humain 27 Rue Juliette Dodu 75010   (France)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; EPOXIDE HYDROLASE; INVASIN; PHOSPHOLIPASE;

ARTICLE; BACTERIAL VIRULENCE; CHROMOSOME; DNA HYBRIDIZATION; EVOLUTION; GENE DELETION; GENE INSERTION; GENE LOCUS; GENE SEQUENCE; GENETIC VARIABILITY; ISOTOPE LABELING; MYCOBACTERIUM AFRICANUM; MYCOBACTERIUM BOVIS; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL;

CHROMOSOME MAPPING; CHROMOSOMES, BACTERIAL; GENE DELETION; GENETIC TECHNIQUES; GENOME, BACTERIAL; MYCOBACTERIUM BOVIS; MYCOBACTERIUM TUBERCULOSIS; VARIATION (GENETICS);

ACTINOBACTERIA (CLASS); BACILLI; BACTERIA (MICROORGANISMS); MYCOBACTERIUM; MYCOBACTERIUM AFRICANUM; MYCOBACTERIUM BOVIS BCG; MYCOBACTERIUM MICROTI; MYCOBACTERIUM TUBERCULOSIS; UNCULTURED ACTINOMYCETE;

EID: 0032949025     PISSN: 0950382X     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2958.1999.01383.x     Document Type: Article

References (30)

1. Arruda, S., Bomfim, G., Knights, R., Huima, B.T., and Riley, L.W. (1993) Cloning of an M. tuberculosis DNA fragment associated with entry and survival inside cells. Science 261: 1454-1457.
2. Bloom, B.R., and Fine, P.E.M. (1994) The BCG experience: implications for future vaccines against tuberculosis. In Tuberculosis: Pathogenesis, Protection and Control. Bloom, B.R. (ed.). Washington, DC: American Society for Microbiology Press, pp. 531-557.
3. Brosch, R., Gordon, S.V., Billault, A., Garnier, T., Eiglmeier, K., Soravito, C., et al. (1998) Use of a Mycobacterium tuberculosis H37Rv bacterial artificial chromosome library for genome mapping, sequencing, and comparative genomics. Infect Immun 66: 2221-2229.
4. Calmette, A. (1927) La Vaccination Contre la Tuberculose. Paris: Masson et Cie.
5. Chee, M., Yang, R., Hubbell, E., Berno, A., Huang, X.C., Stern, D., et al. (1996) Accessing genetic information with high-density DNA arrays. Science 274: 610-614.
6. Cole, S.T., Brosch, R., Parkhill, J., Garnier, T., Churcher, C., Harris, D., et al. (1998) Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence. Nature 393: 537-544.
7. DeRisi, J.L., Iyer, V.R., and Brown, P.O. (1997) Exploring the metabolic and genetic control of gene expression on a genomic scale. Science 278: 610-614.
8. Elhay, M.J., Oettinger, T., and Andersen, P. (1998) Delayed-type hypersensitivity responses to ESAT-6 and MPT64 from Mycobacterium tuberculosis in the guinea pig. Infect Immun 66: 3454-3456.
9. Fine, P.E.M. (1994) Immunities in and to tuberculosis: implications for pathogenesis and vaccination. In Tuberculosis: Back to the Future. Porter, J.D.H., and McAdam, K.P.W.J. (eds). Chichester: John Wiley and Sons, pp. 53-74.
10. Gordon, S.V., Heym, B., Parkhill, J., Barrell, B.G., and Cole, S.T. (1999) New insertion sequences and a novel repetitive element in the genome of Mycobacterium tuberculosis. Microbiology 145: 881-892.
11. Harboe, M., Oettinger, T., Wiker, H.G., Rosenkrands, I., and Andersen, P. (1996) Evidence for occurrence of the ESAT-6 protein in Mycobacterium tuberculosis and virulent Mycobacterium bovis and for its absence in Mycobacterium bovis BCG. Infect Immun 64: 16-22.
12. Heifets, L.B., and Good, R.C. (1994) Current laboratory methods for the diagnosis of tuberculosis. In Tuberculosis: Pathogenesis, Protection and Control. Bloom, B.R. (ed.). Washington, DC: American Society for Microbiology Press, pp. 85-110.
13. Horwitz, M.A., Lee, B.W., Dillon, B.J., and Harth, G. (1995) Protective immunity against tuberculosis induced by vaccination with major extracellular proteins of Mycobacterium tuberculosis. Proc Natl Acad Sci USA 92: 1530-1534.
14. Johansen, K.A., Gill, R.E., and Vasil, M.L. (1996) Biochemical and molecular analysis of phospholipase C and phospholipase D activity in mycobacteria. Infect Immun 64: 3259-3266.
15. Kim, U.J., Birren, B.W., Slepak, T., Mancino, V., Boysen, C., Kang, H.L., et al. (1996) Construction and characterization of a human bacterial artificial chromosome library. Genomics 34: 213-218.
16. Lagranderie, M.R., Balazuc, A.M., Deriaud, E., and Leclerc, C.D. (1996) Comparison of immune responses of mice immunized with five different Mycobacterium bovis vaccine strains. Infect Immun 64: 1-9.
17. Lawes, M., and Maloy, S. (1995) MudSacl, a transposon with strong selectable and counterselectable markers: use for rapid mapping of chromosomal mutations in Salmonella typhimurium. J Bacteriol 177: 1383-1387.
18. Leao, S.C., Rocha, C.L., Murillo, L.A., Parra, C.A., and Patarroyo, M.E. (1995) A species-specific nucleotide sequence of Mycobacterium tuberculosis encodes a protein that exhibits hemolytic activity when expressed in Escherichia coli. Infect Immun 63: 4301-4306.
19. Mahairas, G.G., Sabo, P.J., Hickey, M.J., Singh, D.C., and Stover, C.K. (1996) Molecular analysis of genetic differences between Mycobacterium bovis BCG and virulent M. bovis. J Bacteriol 178: 1274-1282.
20. Moghaddam, M.F., Grant, D.F., Cheek, J.M., Greene, J.F., Williamson, K.C., and Hammock, B.D. (1997) Bioactivation of leukotoxins to their toxic diols by epoxide hydrolase. Nature Med 3: 562-566.
21. Ohno, S. (1995) Active sites of ligands and their receptors are made of common peptides that are also found elsewhere. J Mol Evol 40: 102-106.
22. Pelicic, V., Reyrat, J.M., and Gicquel, B. (1996) Expression of the Bacillus subtilis sacB gene confers sucrose sensitivity on mycobacteria. J Bacteriol 178: 1197-1199.
23. Philipp, W.J., Poulet, S., Eiglmeier, K., Pascopella, L., Balasubramanian, V., Heym, B., et al. (1996a) An integrated map of the genome of the tubercle bacillus, Mycobacterium tuberculosis H37Rv, and comparison with Mycobacterium leprae. Proc Natl Acad Sci USA 93: 3132-3137.
24. Philipp, W.J., Nair, S., Guglielmi, G., Lagranderie, M., Gicquel, B., and Cole, S.T. (1996b) Physical mapping of Mycobacterium bovis BCG Pasteur reveals differences from the genome map of Mycobacterium tuberculosis H37Rv and from M. bovis. Microbiology 142: 3135-3145.
25. Relman, D.A., Domenighini, M.,Tuomanen, E., Rappuoli, R., and Falkow, S. (1989) Filamentous hemagglutinin of Bordetella pertussis: nucleotide sequence and crucial role in adherence. Proc Natl Acad Sci USA 86: 2637-2641.
26. Rosenkrands, I., Rasmussen, P.B., Carnio, M., Jacobsen, S., Theisen, M., and Andersen, P. (1998) Identification and characterization of a 29-kilodalton protein from Mycobacterium tuberculosis culture filtrate recognized by mouse memory effector cells. Infect Immun 66: 2728-2735.
27. Sreevatsan, S., Pan, X., Stockbauer, K.E., Connell, N.D., Kreiswirth, B.N., Whittam, T.S., et al. (1997) Restricted structural genes polymorphism in the Mycobacterium tuberculosis complex indicates evolutionary recent global dissemination. Proc Natl Acad Sci USA 94: 9869-9874.
28. Titball, R.W. (1993) Bacterial phospholipases C. Microbiol Rev 57: 347-366.
29. Wheeler, P.R., and Ratledge, C. (1992) Control and location of acyl-hydrolysing phospholipase activity in pathogenic mycobacteria. J Gen Microbiol 138: 825-830.
30. Woo, S.S., Jiang, J., Gill, B.S., Paterson, A.M., and Wing, R.A. (1994) Construction and characterization of a bacterial artificial chromosome library of Sorghum bicolor. Nucleic Acids Res 22: 4922-4931.