Distinct characteristics of single starch-binding domain SBD1 derived from tandem domains SBD1-SBD2 of halophilic Kocuria varians alpha-amylase

Protein Journal

Volumn 31, Issue 3, 2012, Pages 250-258

  Yamaguchi, Rui ^a   Arakawa, Tsutomu ^b   Tokunaga, Hiroko ^a   Ishibashi, Matsujiro ^a   Tokunaga, Masao ^a  

^a KAGOSHIMA UNIVERSITY   (Japan)

^b Alliance Protein Laboratory   (United States)

Author keywords

Aromatic stacking; Electrostatic repulsion; Halophilic; Refolding; Starch binding domain; Unfolding

Indexed keywords

AMYLASE; AMYLOSE; BINDING PROTEIN; MALTOSE; STARCH BINDING DOMAIN 1 PROTEIN; STARCH BINDING DOMAIN 2 PROTEIN; UNCLASSIFIED DRUG;

ARTICLE; BINDING AFFINITY; CIRCULAR DICHROISM; HALOPHILIC BACTERIUM; KOCURIA VARIANS; MELTING POINT; NONHUMAN; PROTEIN FOLDING; PROTEIN REFOLDING; PROTEIN STRUCTURE; PROTEIN TERTIARY STRUCTURE; PROTEIN UNFOLDING;

ESCHERICHIA COLI; KOCURIA VARIANS;

EID: 84861057527     PISSN: 15723887     EISSN: 18758355     Source Type: Journal    
DOI: 10.1007/s10930-012-9400-2     Document Type: Article

References (35)

1. Bertoldo C, Antranikian G (2002) Curr Opin Chem Biol 6:151-160
2. Boraston AB, Healey M, Klassen J, Ficko-Blean E, van Bueren AL, Law V (2006) J Biol Chem 281:587-598
3. Cantarel BL, Coutinho PM, Rancurel C, Bernard T, Lombard V, Henrissat B (2009) Nucl Acids Res 37:D233-D238
4. Christiansen C, Abou Hachem M, Janecek S, Viksø-Nielsen A, Blennow A, Svensson B (2009) FEBS J 276:5006-5029
5. Eisenberg H, Mevarech M, Zaccai G (1992) Adv Protein Chem 43:1-62
6. Fitter J (2005) Cell Mol Life Sci 62:1925-1937
7. Horikoshi K (1999) Microbiol Mol Biol Rev 63:735-750
8. Ishibashi M, Tokunaga H, Hiratsuka K, Yonezawa Y, Tsurumaru H, Arakawa T, Tokunaga M (2001) FEBS Lett 30:134-138
9. Kawazu T, Nakanishi Y, Uozumi N, Sasaki T, Yamagata H, Tsukagoshi N, Udaka S (1987) J Bacteriol 169:1564-1570
10. Kushner DJ (1985) The Bacteria 8:171-214
11. Laemmli UK (1970) Nature 227:680-685
12. Li X, Yu HY (2011) J Ind Microbiol Biotechnol 38:1837-1843
13. Lowry OH, Rosebrough NJ, Farr AL, Randall RJ (1951) J Biol Chem 193:265-275
14. MacGregor EA, Janecek S, Svensson B (2001) Biochim Biophys Acta 1546:1-20
15. Machovic M, Janecek S (2006) Cell Mol Life Sci 63:2710-2724
16. Marhuenda-Egea FC, Bonete MJ (2002) Curr Opin Biotechnol 13:385-389
17. Mevarech M, Frolow F, Gloss LM (2000) Biophys Chem 86:155-164
18. Oren A, Larimer F, Richardson P, Lapidus A, Csonka LN (2005) Extremophiles 9:275-279
19. Pérez-Pomares F, Díaz S, Bautista V, Pire C, Bravo G, Esclapez J, Zafrilla B, Bonete MJ (2009) Extremophiles 13:633-641
20. Prakash O, Jaiswal N (2010) Appl Biochem Biotechnol 160:2401-2414
21. Shafiei M, Ziaee AA, Amoozegar MA (2011) Ind Microbiol Biotechnol 38:275-281
22. Siggens KW (1987) Mol Microbiol 1:86-91
23. Sivakumar N, Li N, Tang JW, Patel BK, Swaminathan K (2006) FEBS Lett 580:2646-2652
24. Smith AM, Zeeman SC (2005) Smith SM 56:73-98
25. Sumitani J, Tottori T, Kawaguchi T, Arai M (2000) Biochem J 350:477-484
26. Sun H, Zhao P, Ge X, Xia Y, Hao Z, Liu J, Peng M (2010) Appl Biochem Biotechnol 160:988-1003
27. Tan TC, Mijts BN, Swaminathan K, Patel BK, Divne C (2008) J Mol Biol 378:852-870
28. Tokunaga H, Ishibashi M, Arakawa T, Tokunaga M (2004) FEBS Lett 558:7-12
29. Tokunaga H, Arakawa T, Tokunaga M (2008) Protein Sci 17:1603-1610
30. Tokunaga H, Saito S, Sakai K, Yamaguchi R, Katsuyama I, Arakawa T, Onozaki K, Arakawa T, Tokunaga M (2010) Appl Microbiol Biotechnol 86:649-658
31. Ventosa A, Nieto JJ, Oren A (1998) Microbiol Mol Biol Rev 62:504-544
32. Watanabe H, Nishimoto T, Kubota M, Chaen H, Fukuda S (2006) Biosci Biotechnol Biochem 70:2690-2702
33. Yamaguchi R, Tokunaga H, Ishibashi M, Arakawa T, Tokunaga M (2011) Appl Microbiol Biotechnol 89:673-684
34. Yamaguchi R, Inoue Y, Tokunaga H, Ishibashi M, Arakawa T, Sumitani J, Kawaguchi T, Tokunaga M (2011) Int J Biol Macromol 50:95-102
35. Yoon SA, Ryu SI, Lee SB, Moon TW (2008) J Microbiol Biotechnol 18:457-464