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Volumn 580, Issue 11, 2006, Pages 2646-2652

Crystal structure of AmyA lacks acidic surface and provide insights into protein stability at poly-extreme condition

Author keywords

Amylase; Halophilic; Oligomerization; Poly extreme; Thermophilic

Indexed keywords

AMYLASE; OLIGOMER;

EID: 33646205656     PISSN: 00145793     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.febslet.2006.04.017     Document Type: Article
Times cited : (61)

References (25)
  • 1
    • 85088549853 scopus 로고
    • Hyperthermophilic enzymes: sources, uses, and molecular mechanisms for thermostability
    • Vieille C., Hess J.M., Kelly R.M., and Zeikus J.G. Hyperthermophilic enzymes: sources, uses, and molecular mechanisms for thermostability. Appl. Environ. Microbiol. 61 (1995) 1867-1875
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 1867-1875
    • Vieille, C.1    Hess, J.M.2    Kelly, R.M.3    Zeikus, J.G.4
  • 2
    • 0030741375 scopus 로고    scopus 로고
    • The crystal structure of citrate synthase from the hyperthermophilic archaeon Pyrococcus furiosus at 1.9 Å resolution
    • Russell R.J., Ferguson J.M., Hough D.W., Danson M.J., and Taylor G.L. The crystal structure of citrate synthase from the hyperthermophilic archaeon Pyrococcus furiosus at 1.9 Å resolution. Biochemistry 36 (1997) 9983-9994
    • (1997) Biochemistry , vol.36 , pp. 9983-9994
    • Russell, R.J.1    Ferguson, J.M.2    Hough, D.W.3    Danson, M.J.4    Taylor, G.L.5
  • 3
    • 0016771835 scopus 로고
    • Stereochemical basis of heat stability in bacterial ferredoxins and in haemoglobin A2
    • Perutz M.F., and Raidt H. Stereochemical basis of heat stability in bacterial ferredoxins and in haemoglobin A2. Nature 255 (1975) 256-259
    • (1975) Nature , vol.255 , pp. 256-259
    • Perutz, M.F.1    Raidt, H.2
  • 4
    • 0032438190 scopus 로고    scopus 로고
    • The stability of proteins in extreme environments
    • Jaenicke R., and Bohm G. The stability of proteins in extreme environments. Curr. Opin. Struct. Biol. 8 (1998) 738-748
    • (1998) Curr. Opin. Struct. Biol. , vol.8 , pp. 738-748
    • Jaenicke, R.1    Bohm, G.2
  • 5
    • 0034166764 scopus 로고    scopus 로고
    • Halophilic adaptation of enzymes
    • Madern D., Ebel C., and Zaccai G. Halophilic adaptation of enzymes. Extremophiles 4 (2000) 91-98
    • (2000) Extremophiles , vol.4 , pp. 91-98
    • Madern, D.1    Ebel, C.2    Zaccai, G.3
  • 7
    • 12444278965 scopus 로고    scopus 로고
    • Crystal structure of halophilic dodecin: a novel, dodecameric flavin binding protein from Halobacterium salinarum
    • Bieger B., Essen L.O., and Oesterhelt D. Crystal structure of halophilic dodecin: a novel, dodecameric flavin binding protein from Halobacterium salinarum. Structure 11 (2003) 375-385
    • (2003) Structure , vol.11 , pp. 375-385
    • Bieger, B.1    Essen, L.O.2    Oesterhelt, D.3
  • 8
    • 0028958071 scopus 로고
    • Structural features that stabilize halophilic malate dehydrogenase from an archaebacterium
    • Dym O., Mevarech M., and Sussman J.L. Structural features that stabilize halophilic malate dehydrogenase from an archaebacterium. Science 267 (1995) 1344-1346
    • (1995) Science , vol.267 , pp. 1344-1346
    • Dym, O.1    Mevarech, M.2    Sussman, J.L.3
  • 9
    • 0036667421 scopus 로고    scopus 로고
    • Cloning, sequencing and expression of an α-amylase gene, amyA, from the thermophilic halophile Halothermothrix orenii and purification and biochemical characterization of the recombinant enzyme
    • Mijts B.N., and Patel B.K. Cloning, sequencing and expression of an α-amylase gene, amyA, from the thermophilic halophile Halothermothrix orenii and purification and biochemical characterization of the recombinant enzyme. Microbiology 148 (2002) 2343-2349
    • (2002) Microbiology , vol.148 , pp. 2343-2349
    • Mijts, B.N.1    Patel, B.K.2
  • 10
    • 0028322130 scopus 로고
    • Isolation and characterization of Halothermothrix orenii gen. nov., sp. nov., a halophilic, thermophilic, fermentative, strictly anaerobic bacterium
    • Cayol J.L., Ollivier B., Patel B.K., Prensier G., Guezennec J., and Garcia J.L. Isolation and characterization of Halothermothrix orenii gen. nov., sp. nov., a halophilic, thermophilic, fermentative, strictly anaerobic bacterium. Int. J. Syst. Bacteriol. 44 (1994) 534-540
    • (1994) Int. J. Syst. Bacteriol. , vol.44 , pp. 534-540
    • Cayol, J.L.1    Ollivier, B.2    Patel, B.K.3    Prensier, G.4    Guezennec, J.5    Garcia, J.L.6
  • 11
    • 0028824439 scopus 로고
    • Reevaluating the classification of Halobacteroides and Haloanaerobacter species based on sequence comparisons of the 16S ribosomal RNA gene
    • Patel B.K., Andrews K.T., Ollivier B., Mah R.A., and Garcia J.L. Reevaluating the classification of Halobacteroides and Haloanaerobacter species based on sequence comparisons of the 16S ribosomal RNA gene. FEMS Microbiol. Lett. 134 (1995) 115-119
    • (1995) FEMS Microbiol. Lett. , vol.134 , pp. 115-119
    • Patel, B.K.1    Andrews, K.T.2    Ollivier, B.3    Mah, R.A.4    Garcia, J.L.5
  • 12
    • 14244273139 scopus 로고    scopus 로고
    • Crystallization of an α-amylase, AmyA, from the thermophilic halophile Halothermothrix orenii
    • Li N., Patel B.K., Mijts B.N., and Swaminathan K. Crystallization of an α-amylase, AmyA, from the thermophilic halophile Halothermothrix orenii. Acta Crystallogr. D 58 (2002) 2125-2126
    • (2002) Acta Crystallogr. D , vol.58 , pp. 2125-2126
    • Li, N.1    Patel, B.K.2    Mijts, B.N.3    Swaminathan, K.4
  • 13
    • 84889120137 scopus 로고
    • Improved methods for binding protein models in electron density maps and the location of errors in these models
    • Jones T.A., Zou J.Y., Cowan S.W., and Kjeldgaard M. Improved methods for binding protein models in electron density maps and the location of errors in these models. Acta Crystallogr. A47 (1991) 110-119
    • (1991) Acta Crystallogr. , vol.A47 , pp. 110-119
    • Jones, T.A.1    Zou, J.Y.2    Cowan, S.W.3    Kjeldgaard, M.4
  • 14
    • 0032964481 scopus 로고    scopus 로고
    • Automated protein model building combined with iterative structure refinement
    • Perrakis A., Morris R., and Lamzin V.S. Automated protein model building combined with iterative structure refinement. Nat. Struct. Biol. 6 (1999) 458-463
    • (1999) Nat. Struct. Biol. , vol.6 , pp. 458-463
    • Perrakis, A.1    Morris, R.2    Lamzin, V.S.3
  • 15
    • 0026530383 scopus 로고
    • Quantitative analysis of protein far UV circular dichroism spectra by neural networks
    • Böhm G., Muhr R., and Jaenicke R. Quantitative analysis of protein far UV circular dichroism spectra by neural networks. Protein Eng. 5 (1992) 191-195
    • (1992) Protein Eng. , vol.5 , pp. 191-195
    • Böhm, G.1    Muhr, R.2    Jaenicke, R.3
  • 18
    • 0035259225 scopus 로고    scopus 로고
    • Random sequence analysis of genomic DNA of an anaerobic, thermophilic, halophilic bacterium, Halothermothrix orenii
    • Mijts B.N., and Patel B.K. Random sequence analysis of genomic DNA of an anaerobic, thermophilic, halophilic bacterium, Halothermothrix orenii. Extremophiles 5 (2001) 61-69
    • (2001) Extremophiles , vol.5 , pp. 61-69
    • Mijts, B.N.1    Patel, B.K.2
  • 20
    • 0037027525 scopus 로고    scopus 로고
    • Secondary and quaternary structural transition of the halophilic archaeon nucleoside diphosphate kinase under high- and low-salt conditions
    • Ishibashi M., Arakawa T., Philo J.S., Sakashita K., Yonezawa Y., Tokunaga H., and Tokunaga M. Secondary and quaternary structural transition of the halophilic archaeon nucleoside diphosphate kinase under high- and low-salt conditions. FEMS Microbiol. Lett. 216 (2002) 235-241
    • (2002) FEMS Microbiol. Lett. , vol.216 , pp. 235-241
    • Ishibashi, M.1    Arakawa, T.2    Philo, J.S.3    Sakashita, K.4    Yonezawa, Y.5    Tokunaga, H.6    Tokunaga, M.7
  • 21
    • 0033568095 scopus 로고    scopus 로고
    • Effect of the ionic environment on the molecular structure of bacteriophage SPP1 portal protein
    • Jekow P., Behlke J., Tichelaar W., Lurz R., Regalla M., Hinrichs W., and Tavares P. Effect of the ionic environment on the molecular structure of bacteriophage SPP1 portal protein. Eur. J. Biochem. 264 (1999) 724-735
    • (1999) Eur. J. Biochem. , vol.264 , pp. 724-735
    • Jekow, P.1    Behlke, J.2    Tichelaar, W.3    Lurz, R.4    Regalla, M.5    Hinrichs, W.6    Tavares, P.7
  • 22
    • 24144485161 scopus 로고    scopus 로고
    • Modeling analytical ultracentrifugation experiments with an adaptive space-time finite element solution of the Lamm equation
    • Cao W., and Demeler B. Modeling analytical ultracentrifugation experiments with an adaptive space-time finite element solution of the Lamm equation. Biophys. J. 89 (2005) 1589-1602
    • (2005) Biophys. J. , vol.89 , pp. 1589-1602
    • Cao, W.1    Demeler, B.2
  • 23
    • 0035742495 scopus 로고    scopus 로고
    • Treatment of Tunisian salt lakes using solubility phase diagrams
    • Najia K.A., Dalila Ben H.C., and Lotfi Z. Treatment of Tunisian salt lakes using solubility phase diagrams. Pure Appl. Chem. 73 (2001) 761-770
    • (2001) Pure Appl. Chem. , vol.73 , pp. 761-770
    • Najia, K.A.1    Dalila Ben, H.C.2    Lotfi, Z.3
  • 24
    • 0034620588 scopus 로고    scopus 로고
    • Halophilic adaptation: novel solvent protein interactions observed in the 2.9 and 2.6 Å resolution structures of the wild type and a mutant of malate dehydrogenase from Haloarcula marismortui
    • Richard S.B., Madern D., Garcin E., and Zaccai G. Halophilic adaptation: novel solvent protein interactions observed in the 2.9 and 2.6 Å resolution structures of the wild type and a mutant of malate dehydrogenase from Haloarcula marismortui. Biochemistry 39 (2000) 992-1000
    • (2000) Biochemistry , vol.39 , pp. 992-1000
    • Richard, S.B.1    Madern, D.2    Garcin, E.3    Zaccai, G.4
  • 25
    • 0030040794 scopus 로고    scopus 로고
    • On the role of surface tension in the stabilization of globular proteins
    • Lin T.Y., and Timasheff S.N. On the role of surface tension in the stabilization of globular proteins. Protein Sci. 5 (1996) 372-381
    • (1996) Protein Sci. , vol.5 , pp. 372-381
    • Lin, T.Y.1    Timasheff, S.N.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.