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Volumn 6, Issue , 2012, Pages 49-58

White blood cell differentials enrich whole blood expression data in the context of acute cardiac allograft rejection

Author keywords

Cell specific expression; Deconvolution; Heart; Microarray expression; Transplantation

Indexed keywords

ADAM METALLOPEPTIDASE DOMAIN 8; ADAM PROTEIN; ALKALINE PHOSPHATASE; BIOLOGICAL MARKER; DNA DEPENDENT PROTEIN KINASE; FLICE INHIBITORY PROTEIN; MONOCARBOXYLATE TRANSPORTER 4; TAURINE TRANSPORTER; UNCLASSIFIED DRUG;

EID: 84860857099     PISSN: None     EISSN: 11779322     Source Type: Journal    
DOI: 10.4137/BBI.S9197     Document Type: Article
Times cited : (9)

References (45)
  • 1
    • 68949204945 scopus 로고    scopus 로고
    • Whole blood genomic biomarkers of acute cardiac allograft rejection
    • Lin D, et al. Whole blood genomic biomarkers of acute cardiac allograft rejection. The Journal of Heart and Lung Transplantation. 2009;28:927-935.
    • (2009) The Journal of Heart and Lung Transplantation , vol.28 , pp. 927-935
    • Lin, D.1
  • 2
    • 78650842079 scopus 로고    scopus 로고
    • Whole blood biomarkers of acute cardiac allograft rejection: Double-crossing the biopsy
    • Hollander Z, et al. Whole blood biomarkers of acute cardiac allograft rejection: Double-crossing the biopsy. Transplantation. 2010;90:1388-1393.
    • (2010) Transplantation , vol.90 , pp. 1388-1393
    • Hollander, Z.1
  • 3
    • 34147163526 scopus 로고    scopus 로고
    • Diagnosis of acute renal allograft rejection by analyzing whole blood mRNA expression of lymphocyte marker molecules
    • Alakulppi NS, Kyllönen LE, Partanen J, Salmela KT, Laine JT. Diagnosis of acute renal allograft rejection by analyzing whole blood mRNA expression of lymphocyte marker molecules. Transplantation. 2007;83:791-798.
    • (2007) Transplantation , vol.83 , pp. 791-798
    • Alakulppi, N.S.1    Kyllönen, L.E.2    Partanen, J.3    Salmela, K.T.4    Laine, J.T.5
  • 4
    • 73249144602 scopus 로고    scopus 로고
    • Functional genomic analysis of peripheral blood during early acute renal allograft rejection
    • Günther OP, et al. Functional genomic analysis of peripheral blood during early acute renal allograft rejection. Transplantation. 2009;88:942-951.
    • (2009) Transplantation , vol.88 , pp. 942-951
    • Günther, O.P.1
  • 5
    • 34848857054 scopus 로고    scopus 로고
    • Identification of a peripheral blood transcriptional bio-marker panel associated with operational renal allograft tolerance
    • Brouard S, et al. Identification of a peripheral blood transcriptional bio-marker panel associated with operational renal allograft tolerance. Proceedings of the National Academy of Sciences. 2007;104:15448-15453.
    • (2007) Proceedings of the National Academy of Sciences , vol.104 , pp. 15448-15453
    • Brouard, S.1
  • 6
    • 77956580017 scopus 로고    scopus 로고
    • Proteomic signatures in plasma during early acute renal allograft rejection
    • Freue GVC, et al. Proteomic signatures in plasma during early acute renal allograft rejection. Molecular & Cellular Proteomics. 2010;9:1954-1967.
    • (2010) Molecular & Cellular Proteomics , vol.9 , pp. 1954-1967
    • Freue, G.V.C.1
  • 7
    • 77951634577 scopus 로고    scopus 로고
    • Cell type-specific gene expression differences in complex tissues
    • Shen-Orr SS, et al. Cell type-specific gene expression differences in complex tissues. Nat Meth. 2010;7:287-289.
    • (2010) Nat Meth , vol.7 , pp. 287-289
    • Shen-Orr, S.S.1
  • 8
    • 77954384233 scopus 로고    scopus 로고
    • Assessing the human immune system through blood transcriptomics
    • Chaussabel D, Pascual V, Banchereau J. Assessing the human immune system through blood transcriptomics. BMC biology. 2010;8:84.
    • (2010) BMC Biology , vol.8 , pp. 84
    • Chaussabel, D.1    Pascual, V.2    Banchereau, J.3
  • 9
    • 79954576925 scopus 로고    scopus 로고
    • Gene expression profiles in peripheral blood for the diagnosis of autoimmune diseases
    • Mesko B, Poliska S, Nagy L. Gene expression profiles in peripheral blood for the diagnosis of autoimmune diseases. Trends in Molecular Medicine. 2011;17:223-233.
    • (2011) Trends In Molecular Medicine , vol.17 , pp. 223-233
    • Mesko, B.1    Poliska, S.2    Nagy, L.3
  • 10
    • 80055062310 scopus 로고    scopus 로고
    • Investigation of variation in gene expression profling of human blood by extended principle component analysis
    • Xu Q, et al. Investigation of variation in gene expression profling of human blood by extended principle component analysis. PLoS ONE. 2011;6:e26905.
    • (2011) PLoS ONE , vol.6
    • Xu, Q.1
  • 11
    • 78049461402 scopus 로고    scopus 로고
    • Adding value to liver (and allograft) biopsy evaluation using a combination of multiplex quantum dot immunostaining, high- resolution whole-slide digital imaging, and automated image analysis
    • Isse K, et al. Adding value to liver (and allograft) biopsy evaluation using a combination of multiplex quantum dot immunostaining, high- resolution whole-slide digital imaging, and automated image analysis. Clinics in Liver Disease. 2010;14:669-685.
    • (2010) Clinics In Liver Disease , vol.14 , pp. 669-685
    • Isse, K.1
  • 12
    • 80255135608 scopus 로고    scopus 로고
    • Population-specific expression analysis (PSEA) reveals molecular changes in diseased brain
    • Kuhn A, Thu D, Waldvogel HJ, Faull RLM, Luthi-Carter R. Population-specific expression analysis (PSEA) reveals molecular changes in diseased brain. Nature Methods. 2011;8:945-947.
    • (2011) Nature Methods , vol.8 , pp. 945-947
    • Kuhn, A.1    Thu, D.2    Waldvogel, H.J.3    Faull, R.L.M.4    Luthi-Carter, R.5
  • 13
    • 84860370062 scopus 로고    scopus 로고
    • Semi-supervised nonnegative matrix factorization for gene expression deconvolution: A case study
    • doi:10.1016/j.meegid.2011.08.014
    • Gaujoux R, Seoighe C. Semi-supervised nonnegative matrix factorization for gene expression deconvolution: A case study. Infection, Genetics and Evolution. 2011. doi:10.1016/j.meegid.2011.08.014.
    • (2011) Infection, Genetics and Evolution
    • Gaujoux, R.1    Seoighe, C.2
  • 14
    • 19944406420 scopus 로고    scopus 로고
    • Whole blood and leukocyte RNA isolation for gene expression analyses
    • Feezor RJ, et al. Whole blood and leukocyte RNA isolation for gene expression analyses. Physiological Genomics. 2004;19:247-254.
    • (2004) Physiological Genomics , vol.19 , pp. 247-254
    • Feezor, R.J.1
  • 15
    • 2942735008 scopus 로고    scopus 로고
    • Comparison of different isolation techniques prior gene expression profling of blood derived cells: Impact on physiological responses, on overall expression and the role of different cell types
    • Debey S, et al. Comparison of different isolation techniques prior gene expression profling of blood derived cells: impact on physiological responses, on overall expression and the role of different cell types. Pharmacogenomics J. 2004;4:193-207.
    • (2004) Pharmacogenomics J , vol.4 , pp. 193-207
    • Debey, S.1
  • 16
    • 67749112023 scopus 로고    scopus 로고
    • Deconvolution of blood microarray data identifies cellular activation patterns in systemic lupus erythematosus
    • Abbas AR, Wolslegel K, Seshasayee D, Modrusan Z, Clark HF. Deconvolution of blood microarray data identifies cellular activation patterns in systemic lupus erythematosus. PLoS ONE. 2009;4:e6098.
    • (2009) PLoS ONE , vol.4
    • Abbas, A.R.1    Wolslegel, K.2    Seshasayee, D.3    Modrusan, Z.4    Clark, H.F.5
  • 17
  • 18
    • 27344435774 scopus 로고    scopus 로고
    • Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
    • Subramanian A, et al. Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles. Proceedings of the National Academy of Sciences of the United States of America. 2005;102:15545-15550.
    • (2005) Proceedings of the National Academy of Sciences of the United States of America , vol.102 , pp. 15545-15550
    • Subramanian, A.1
  • 19
    • 76249090489 scopus 로고    scopus 로고
    • BioGPS: An extensible and customizable portal for querying and organizing gene annotation resources
    • Wu C, et al. BioGPS: an extensible and customizable portal for querying and organizing gene annotation resources. Genome Biol. 2009; 10:R130.
    • (2009) Genome Biol , vol.10
    • Wu, C.1
  • 20
    • 11144358198 scopus 로고    scopus 로고
    • A gene atlas of the mouse and human protein-encoding tran-scriptomes
    • Su AI, et al. A gene atlas of the mouse and human protein-encoding tran-scriptomes. Proc Natl Acad Sci U S A. 2004;101:6062-6067.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 6062-6067
    • Su, A.I.1
  • 21
    • 0034254638 scopus 로고    scopus 로고
    • CD147 is tightly associated with lactate transporters MCT1 and MCT4 and facilitates their cell surface expression
    • Kirk P, et al. CD147 is tightly associated with lactate transporters MCT1 and MCT4 and facilitates their cell surface expression. EMBO J. 2000;19:3896-3904.
    • (2000) EMBO J , vol.19 , pp. 3896-3904
    • Kirk, P.1
  • 22
    • 33644790739 scopus 로고    scopus 로고
    • Monocarboxylate transporter MCT1 is a target for immu-nosuppression
    • Murray CM, et al. Monocarboxylate transporter MCT1 is a target for immu-nosuppression. Nat Chem Biol. 2005;1:371-376.
    • (2005) Nat Chem Biol , vol.1 , pp. 371-376
    • Murray, C.M.1
  • 23
    • 36248932713 scopus 로고    scopus 로고
    • The specific monocarboxylate transporter (MCT1) inhibitor, AR-C117977, a novel immunosuppressant, prolongs allograft survival in the mouse
    • Bueno V, et al. The specific monocarboxylate transporter (MCT1) inhibitor, AR-C117977, a novel immunosuppressant, prolongs allograft survival in the mouse. Transplantation. 2007;84:1204-1207.
    • (2007) Transplantation , vol.84 , pp. 1204-1207
    • Bueno, V.1
  • 24
    • 36249023288 scopus 로고    scopus 로고
    • The specific monocarboxylate transporter-1 (MCT-1) inhibitor, AR-C117977, induces donor-specific suppression, reducing acute and chronic allograft rejection in the rat
    • Ekberg H, et al. The specific monocarboxylate transporter-1 (MCT-1) inhibitor, AR-C117977, induces donor-specific suppression, reducing acute and chronic allograft rejection in the rat. Transplantation. 2007;84: 1191-1199.
    • (2007) Transplantation , vol.84 , pp. 1191-1199
    • Ekberg, H.1
  • 25
    • 0034663601 scopus 로고    scopus 로고
    • The low-affnity monocarboxylate transporter MCT4 is adapted to the export of lactate in highly glycolytic cells
    • Dimmer KS, Friedrich B, Lang F, Deitmer JW, Bröer S. The low-affnity monocarboxylate transporter MCT4 is adapted to the export of lactate in highly glycolytic cells. Biochem J. 2000;350:219-227. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1221245/
    • (2000) Biochem J , vol.350 , pp. 219-227
    • Dimmer, K.S.1    Friedrich, B.2    Lang, F.3    Deitmer, J.W.4    Bröer, S.5
  • 26
    • 61449221901 scopus 로고    scopus 로고
    • Lactate boosts TLR4 signaling and NF-κB pathway-mediated gene transcription in macrophages via monocarboxylate transporters and MD-2 up- regulation
    • Samuvel DJ, Sundararaj KP, Nareika A, Lopes-Virella MF, Huang Y. Lactate boosts TLR4 signaling and NF-κB pathway-mediated gene transcription in macrophages via monocarboxylate transporters and MD-2 up- regulation. The Journal of Immunology. 2009;182:2476-2484.
    • (2009) The Journal of Immunology , vol.182 , pp. 2476-2484
    • Samuvel, D.J.1    Sundararaj, K.P.2    Nareika, A.3    Lopes-Virella, M.F.4    Huang, Y.5
  • 27
    • 8644221278 scopus 로고    scopus 로고
    • Evidence for a role of toll-like receptor 4 in development of chronic allograft rejection after cardiac transplantation
    • Methe H, Zimmer E, Grimm C, Nabauer M, Koglin J. Evidence for a role of toll-like receptor 4 in development of chronic allograft rejection after cardiac transplantation. Transplantation. 2004;78:1324-1331.
    • (2004) Transplantation , vol.78 , pp. 1324-1331
    • Methe, H.1    Zimmer, E.2    Grimm, C.3    Nabauer, M.4    Koglin, J.5
  • 28
    • 63149177586 scopus 로고    scopus 로고
    • Production of reactive oxygen and nitrogen species in phagocytes is regulated by taurine chloramine
    • Kim C, Cha YN. Production of reactive oxygen and nitrogen species in phagocytes is regulated by taurine chloramine. Taurine. 2009;643(7): 463-472.
    • (2009) Taurine , vol.643 , Issue.7 , pp. 463-472
    • Kim, C.1    Cha, Y.N.2
  • 29
    • 25644459871 scopus 로고    scopus 로고
    • Inhibition of LPS-induced NO production by taurine chloramine in macrophages is mediated though Ras-ERK-NF-κB
    • Kim JW, Kim C. Inhibition of LPS-induced NO production by taurine chloramine in macrophages is mediated though Ras-ERK-NF-κB. Biochemical Pharmacology. 2005;70:1352-1360.
    • (2005) Biochemical Pharmacology , vol.70 , pp. 1352-1360
    • Kim, J.W.1    Kim, C.2
  • 30
    • 77949487313 scopus 로고    scopus 로고
    • Taurine chloramine induces heme oxygenase-1 expression via Nrf 2 activation in murine macrophages
    • Kim C, Jang JS, Cho MR, Agarawal SR, Cha YN. Taurine chloramine induces heme oxygenase-1 expression via Nrf 2 activation in murine macrophages. International Immunopharmacology. 2010;10:440-446.
    • (2010) International Immunopharmacology , vol.10 , pp. 440-446
    • Kim, C.1    Jang, J.S.2    Cho, M.R.3    Agarawal, S.R.4    Cha, Y.N.5
  • 31
    • 0035881265 scopus 로고    scopus 로고
    • Taurine chloramine inhibits inducible nitric oxide synthase and TNF-α gene expression in activated alveolar macrophages: Decreased NF-κB activation and IκB kinase activity
    • Barua M, Liu Y, Quinn MR. Taurine chloramine inhibits inducible nitric oxide synthase and TNF-α gene expression in activated alveolar macrophages: Decreased NF-κB activation and IκB kinase activity. The Journal of Immunology. 2001;167:2275-2281.
    • (2001) The Journal of Immunology , vol.167 , pp. 2275-2281
    • Barua, M.1    Liu, Y.2    Quinn, M.R.3
  • 32
    • 0036177247 scopus 로고    scopus 로고
    • Taurine chloramine inhibits lymphocyte proliferation and decreases cytokine production in activated human leukocytes
    • Park E, Jia J, Quinn MR, Schuller-Levis G. Taurine chloramine inhibits lymphocyte proliferation and decreases cytokine production in activated human leukocytes. Clinical Immunology. 2002;102:179-184.
    • (2002) Clinical Immunology , vol.102 , pp. 179-184
    • Park, E.1    Jia, J.2    Quinn, M.R.3    Schuller-Levis, G.4
  • 33
    • 33846509794 scopus 로고    scopus 로고
    • The detection of ADAM8 protein on cells of the human immune system and the demonstration of its expression on peripheral blood B cells, dendritic cells and monocyte subsets
    • Richens J, et al. The detection of ADAM8 protein on cells of the human immune system and the demonstration of its expression on peripheral blood B cells, dendritic cells and monocyte subsets. Immunobiology. 2007;212:29-38.
    • (2007) Immunobiology , vol.212 , pp. 29-38
    • Richens, J.1
  • 34
    • 0031128165 scopus 로고    scopus 로고
    • CD156 (human ADAM8): Expression, primary amino acid sequence, and gene location
    • Yoshiyama K, Higuchi Y, Kataoka M, Matsuura K, Yamamoto S. CD156 (human ADAM8): expression, primary amino acid sequence, and gene location. Genomics. 1997;41:56-62.
    • (1997) Genomics , vol.41 , pp. 56-62
    • Yoshiyama, K.1    Higuchi, Y.2    Kataoka, M.3    Matsuura, K.4    Yamamoto, S.5
  • 36
    • 79955761920 scopus 로고    scopus 로고
    • Cellular FLICE-inhibitory protein (cFLIP) isoforms block CD95- and TRAIL death receptor-induced gene induction irrespective of processing of caspase-8 or cFLIP in the death-inducing signaling complex
    • Kavuri SM, et al. Cellular FLICE-inhibitory protein (cFLIP) isoforms block CD95- and TRAIL death receptor-induced gene induction irrespective of processing of caspase-8 or cFLIP in the death-inducing signaling complex. J Biol Chem. 2011;286:16631-16646.
    • (2011) J Biol Chem , vol.286 , pp. 16631-16646
    • Kavuri, S.M.1
  • 38
    • 21344446363 scopus 로고    scopus 로고
    • Immune response in silico (IRIS): Immune-specific genes identified from a compendium of microarray expression data
    • Abbas AR, et al. Immune response in silico (IRIS): immune-specific genes identified from a compendium of microarray expression data. Genes Immun. 2005;6:319-331.
    • (2005) Genes Immun , vol.6 , pp. 319-331
    • Abbas, A.R.1
  • 39
    • 22144434185 scopus 로고    scopus 로고
    • Revision of the 1990 working formulation for the standardization of nomenclature in the diagnosis of heart rejection
    • Stewart S, et al. Revision of the 1990 working formulation for the standardization of nomenclature in the diagnosis of heart rejection. The Journal of Heart and Lung Transplantation. 2005;24:1710-1720.
    • (2005) The Journal of Heart and Lung Transplantation , vol.24 , pp. 1710-1720
    • Stewart, S.1
  • 40
    • 28744458859 scopus 로고    scopus 로고
    • Bioconductor: Open software development for computational biology and bioinformatics
    • Gentleman RC, et al. Bioconductor: open software development for computational biology and bioinformatics. Genome biology. 2004;5:R80.
    • (2004) Genome Biology , vol.5
    • Gentleman, R.C.1
  • 41
    • 0142121516 scopus 로고    scopus 로고
    • Exploration, normalization, and summaries of high density oligonucleotide array probe level data
    • Irizarry RA, et al. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics. 2003;4:249-264.
    • (2003) Biostatistics , vol.4 , pp. 249-264
    • Irizarry, R.A.1
  • 43
    • 36549082873 scopus 로고    scopus 로고
    • MDQC: A new quality assessment method for microar-rays based on quality control reports
    • Cohen Freue G V, et al. MDQC: a new quality assessment method for microar-rays based on quality control reports. Bioinformatics. 2007;23:3162-3169.
    • (2007) Bioinformatics , vol.23 , pp. 3162-3169
    • Cohen Freue, G.V.1
  • 44
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
    • Bolstad BM, Irizarry R, Åstrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics. 2003;19:185-193.
    • (2003) Bioinformatics , vol.19 , pp. 185-193
    • Bolstad, B.M.1    Irizarry, R.2    Åstrand, M.3    Speed, T.P.4
  • 45
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to the ionizing radiation response
    • Tusher VG. Significance analysis of microarrays applied to the ionizing radiation response. Proceedings of the National Academy of Sciences. 2001;98:5116-5121.
    • (2001) Proceedings of the National Academy of Sciences , vol.98 , pp. 5116-5121
    • Tusher, V.G.1


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