메뉴 건너뛰기




Volumn 93, Issue 2, 2012, Pages 589-604

Species limits and integrated taxonomy of the Idaho ground squirrel (Urocitellus brunneus): Genetic and ecological differentiation

Author keywords

cohesion species concept; control region; cytochrome b; microsatellites; phylogeny; species delimitation; Urocitellus brunneus

Indexed keywords

BAYESIAN ANALYSIS; COALESCENCE; CONSERVATION GENETICS; CYTOCHROME; GENE FLOW; GENETIC DIFFERENTIATION; GENETIC MARKER; MORPHOLOGY; PHYLOGENETICS; PHYLOGENY; RODENT; SPECIES CONSERVATION; SUBSPECIES; TAXONOMY;

EID: 84860577852     PISSN: 00222372     EISSN: 15451542     Source Type: Journal    
DOI: 10.1644/11-MAMM-A-021.1     Document Type: Review
Times cited : (14)

References (98)
  • 1
    • 14544289241 scopus 로고    scopus 로고
    • Accounting for uncertainty in the tree topology has little effect on the decisiontheoretic approach to model selection in phylogeny estimation
    • ABDO, Z., V. N. MININ, P. JOYCE, AND J. SULLIVAN. 2005. Accounting for uncertainty in the tree topology has little effect on the decisiontheoretic approach to model selection in phylogeny estimation. Molecular Biology and Evolution 22:691-703.
    • (2005) Molecular Biology and Evolution , vol.22 , pp. 691-703
    • Abdo, Z.1    Minin, V.N.2    Joyce, P.3    Sullivan, J.4
  • 2
    • 33748797396 scopus 로고    scopus 로고
    • Congeneric phylogeography: Hypothesizing species limits and evolutionary processes in patagonian lizards of the liolaemus boulengeri group squamata: Liolaemini
    • AVILA, L., M. MORANDO, AND J. SITES. 2006. Congeneric phylogeography: hypothesizing species limits and evolutionary processes in Patagonian lizards of the Liolaemus boulengeri group (Squamata: Liolaemini). Biological Journal of the Linnean Society 89:241-275.
    • (2006) Biological Journal of the Linnean Society , vol.89 , pp. 241-275
    • Avila, L.1    Morando, M.2    Sites, J.3
  • 3
    • 0002961523 scopus 로고
    • Principles of genealogical concordance in species concepts and biological taxonomy
    • D. Futuyama and J. Antonovics, eds.). Oxford University Press, New York
    • AVISE, J. C., AND R. M. J. BALL. 1990. Principles of genealogical concordance in species concepts and biological taxonomy. Pp. 45- 67 in Oxford surveys in evolutionary biology (D. Futuyama and J. Antonovics, eds.). Oxford University Press, New York.
    • (1990) Oxford Surveys in Evolutionary Biology , pp. 45-67
    • Avise, J.C.1    Ball, R.M.J.2
  • 4
    • 33749585234 scopus 로고    scopus 로고
    • Taxonomy and conservation: A case study from Chamaedorea alternans
    • BACON, C., AND C. BAILEY. 2006. Taxonomy and conservation: a case study from Chamaedorea alternans. Annals of Botany 98:755-763.
    • (2006) Annals of Botany , vol.98 , pp. 755-763
    • Bacon, C.1    Bailey, C.2
  • 5
    • 33748449028 scopus 로고    scopus 로고
    • Speciation in mammals and the genetic species concept
    • BAKER, R., AND R. BRADLEY. 2006. Speciation in mammals and the genetic species concept. Journal of Mammalogy 87:643-662.
    • (2006) Journal of Mammalogy , vol.87 , pp. 643-662
    • Baker, R.1    Bradley, R.2
  • 7
    • 0034496790 scopus 로고    scopus 로고
    • Mitochondrial DNA phylogeography of the polytypic north american rat snake (elaphe obsoleta): A critique of the subspecies concept
    • BURBRINK, F., R. LAWSON, AND J. SLOWINSKI. 2000. Mitochondrial DNA phylogeography of the polytypic North American rat snake (Elaphe obsoleta): a critique of the subspecies concept. Evolution 54:2107-2118.
    • (2000) Evolution , vol.54 , pp. 2107-2118
    • Burbrink, F.1    Lawson, R.2    Slowinski, J.3
  • 8
    • 34249820530 scopus 로고    scopus 로고
    • Integrating coalescent and ecological niche modeling in comparative phylogeography
    • CARSTENS, B., AND C. RICHARDS. 2007. Integrating coalescent and ecological niche modeling in comparative phylogeography. Evolution 61:1439-1454.
    • (2007) Evolution , vol.61 , pp. 1439-1454
    • Carstens, B.1    Richards, C.2
  • 9
    • 0035130163 scopus 로고    scopus 로고
    • Genomic divergences between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees
    • CHEN, F., AND W. LI. 2001. Genomic divergences between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees. American Journal of Human Genetics 68:444-456.
    • (2001) American Journal of Human Genetics , vol.68 , pp. 444-456
    • Chen, F.1    Li, W.2
  • 10
    • 0033771358 scopus 로고    scopus 로고
    • TCS: A computer program to estimate gene genealogies
    • CLEMENT, M., D. POSADA, AND K. CRANDALL. 2000. TCS: a computer program to estimate gene genealogies. Molecular Ecology 9:1657-1660.
    • (2000) Molecular Ecology , vol.9 , pp. 1657-1660
    • Clement, M.1    Posada, D.2    Crandall, K.3
  • 11
    • 0020869892 scopus 로고
    • Species concepts and speciation analysis
    • CRACRAFT, J. 1983. Species concepts and speciation analysis. Current Ornithology 1:159-187.
    • (1983) Current Ornithology , vol.1 , pp. 159-187
    • Cracraft, J.1
  • 12
    • 0027285731 scopus 로고
    • Empirical tests of some predictions from coalescent theory with applications to intraspecific phylogeny reconstruction
    • CRANDALL, K. A., AND A. R. TEMPLETON. 1993. Empirical tests of some predictions from coalescent theory with applications to intraspecific phylogeny reconstruction. Genetics 134:959-969.
    • (1993) Genetics , vol.134 , pp. 959-969
    • Crandall, K.A.1    Templeton, A.R.2
  • 14
    • 21244479740 scopus 로고    scopus 로고
    • Detecting the number of clusters of individuals using the software Structure: A simulation study
    • EVANNO, G., S. REGNAUT, AND J. GOUDET. 2005. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Molecular Ecology 14:2611-2620.
    • (2005) Molecular Ecology , vol.14 , pp. 2611-2620
    • Evanno, G.1    Regnaut, S.2    Goudet, J.3
  • 15
    • 85007110786 scopus 로고    scopus 로고
    • Arlequin version 3.0: An integrated software package for population genetics data analysis
    • EXCOFFIER, L., G. LAVAL, AND S. SCHNEIDER. 2005. Arlequin version 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online 1:47-50.
    • (2005) Evolutionary Bioinformatics Online , vol.1 , pp. 47-50
    • Excoffier, L.1    Laval, G.2    Schneider, S.3
  • 16
    • 0026681074 scopus 로고
    • Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data
    • EXCOFFIER, L., P. E. SMOUSE, AND J. M. QUATTRO. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131:479-491.
    • (1992) Genetics , vol.131 , pp. 479-491
    • Excoffier, L.1    Smouse, P.E.2    Quattro, J.M.3
  • 17
  • 18
    • 0842322955 scopus 로고    scopus 로고
    • Species-level paraphyly and polyphyly: Frequency, causes, and consequences, with insights from animal mitochondrial DNA
    • FUNK, D., AND J. OMLAND. 2003. Species-level paraphyly and polyphyly: frequency, causes, and consequences, with insights from animal mitochondrial DNA. Annual Review of Ecology, Evolution, and Systematics 34:397-423.
    • (2003) Annual Review of Ecology Evolution and Systematics , vol.34 , pp. 397-423
    • Funk, D.1    Omland, J.2
  • 19
    • 30144439270 scopus 로고    scopus 로고
    • Genetic diversity and population divergence in fragmented habitats: Conservation of Idaho ground squirrels
    • GARNER, A., J. RACHLOW, AND L. WAITS. 2005. Genetic diversity and population divergence in fragmented habitats: conservation of Idaho ground squirrels. Conservation Genetics 6:759-774.
    • (2005) Conservation Genetics , vol.6 , pp. 759-774
    • Garner, A.1    Rachlow, J.2    Waits, L.3
  • 20
    • 0032805771 scopus 로고    scopus 로고
    • Corroboration among data sets in simultaneous analysis: Hidden support for phylogenetic relationships among higher level artiodactyl taxa
    • GATESY, J., P. O'GRADY, AND R. BAKER. 1999. Corroboration among data sets in simultaneous analysis: hidden support for phylogenetic relationships among higher level artiodactyl taxa. Cladistics 15:271-313.
    • (1999) Cladistics , vol.15 , pp. 271-313
    • Gatesy, J.1    O'Grady, P.2    Baker, R.3
  • 21
    • 0001335518 scopus 로고    scopus 로고
    • Population genetic structure of the northern Idaho ground squirrel spermophilus brunneus brunneus
    • GAVIN, T. A., P. W. SHERMAN, E. YENSEN, AND B. MAY. 1999. Population genetic structure of the northern Idaho ground squirrel (Spermophilus brunneus brunneus). Journal of Mammalogy 80:156-168.
    • (1999) Journal of Mammalogy , vol.80 , pp. 156-168
    • Gavin, T.A.1    Sherman, P.W.2    Yensen, E.3    May, B.4
  • 22
    • 0034775938 scopus 로고    scopus 로고
    • Nuclear and mtDNA phylogenies of the Trimeresurus complex: Implications for the gene versus species tree debate
    • GIANNASI, N., A. MALHOTRA, AND R. S. THORPE. 2001. Nuclear and mtDNA phylogenies of the Trimeresurus complex: implications for the gene versus species tree debate. Molecular Phylogenetics and Evolution 19:57-66.
    • (2001) Molecular Phylogenetics and Evolution , vol.19 , pp. 57-66
    • Giannasi, N.1    Malhotra, A.2    Thorpe, R.S.3
  • 23
    • 0346270015 scopus 로고
    • Biochemical differentiation in the idaho ground squirrel, spermophilus brunneus rodentia: Sciuridae
    • GILL, A., AND E. YENSEN. 1992. Biochemical differentiation in the Idaho ground squirrel, Spermophilus brunneus (Rodentia: Sciuridae). Great Basin Naturalist 52:155-159.
    • (1992) Great Basin Naturalist , vol.52 , pp. 155-159
    • Gill, A.1    Yensen, E.2
  • 24
    • 0020527670 scopus 로고
    • Intraspecific nucleotide sequence variability surrounding the origin of replication in human mitochondrial DNA
    • GREENBERG, B. D., J. E. NEWBOLD, AND A. SUGINO. 1983. Intraspecific nucleotide sequence variability surrounding the origin of replication in human mitochondrial DNA. Gene 21:33-49.
    • (1983) Gene , vol.21 , pp. 33-49
    • Greenberg, B.D.1    Newbold, J.E.2    Sugino, A.3
  • 25
    • 33845506861 scopus 로고    scopus 로고
    • Taxonomic considerations in listing subspecies under the U.S
    • HAIG, S. M., ET AL. 2006. Taxonomic considerations in listing subspecies under the U.S. Endangered Species Act. Conservation Biology 20:1584-1594.
    • (2006) Endangered Species Act. Conservation Biology , vol.20 , pp. 1584-1594
    • Haig, S.M.1    Et, A.L.2
  • 27
    • 65949114052 scopus 로고    scopus 로고
    • Generic revision in the holarctic ground squirrel genus spermophilus
    • HELGEN, K. M., F. R. COLE, L. E. HELGEN, AND D. E. WILSON. 2009. Generic revision in the Holarctic ground squirrel genus Spermophilus. Journal of Mammalogy 90:270-305.
    • (2009) Journal of Mammalogy , vol.90 , pp. 270-305
    • Helgen, K.M.1    Cole, F.R.2    Helgen, L.E.3    Wilson, D.E.4
  • 28
    • 2442617184 scopus 로고    scopus 로고
    • Sciurid phylogeny and the paraphyly of holarctic ground squirrels spermophilus
    • HERRON, M. D., T. A. CASTOE, AND C. L. PARKINSON. 2004. Sciurid phylogeny and the paraphyly of Holarctic ground squirrels (Spermophilus). Molecular Phylogenetics and Evolution 31:1015-1030.
    • (2004) Molecular Phylogenetics and Evolution , vol.31 , pp. 1015-1030
    • Herron, M.D.1    Castoe, T.A.2    Parkinson, C.L.3
  • 29
    • 3142714474 scopus 로고    scopus 로고
    • Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of drosophila pseudoobscura and d persimilis
    • HEY, J., AND R. NIELSEN. 2004. Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis. Genetics 167:747-760.
    • (2004) Genetics , vol.167 , pp. 747-760
    • Hey, J.1    Nielsen, R.2
  • 32
    • 0009649786 scopus 로고
    • Revision of the north american ground squirrels, with a classification of the north american sciuridae
    • HOWELL, A. 1938. Revision of the North American ground squirrels, with a classification of the North American Sciuridae. North American Fauna 56:1-256.
    • (1938) North American Fauna , vol.56 , pp. 1-256
    • Howell, A.1
  • 33
    • 0034849408 scopus 로고    scopus 로고
    • MrBayes: Bayesian inference of phylogeny
    • HUELSENBECK, J., AND F. RONQUIST. 2001. MrBayes: Bayesian inference of phylogeny. Bioinformatics 17:754-755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.1    Ronquist, F.2
  • 34
    • 0000013908 scopus 로고    scopus 로고
    • The ideal species concept-And why we can't get it
    • M. Clardige, H. Dawah, and M. Wilson, eds. Chapman and Hall, London, United Kingdom
    • HULL, D. 1997. The ideal species concept-and why we can't get it. Pp. 358-379 in Species: the units of biodiversity (M. Clardige, H. Dawah, and M. Wilson, eds.). Chapman and Hall, London, United Kingdom.
    • (1997) Species: The Units of Biodiversity , pp. 358-379
    • Hull, D.1
  • 36
    • 33748615715 scopus 로고    scopus 로고
    • Genetic isolation and divergence in sexual traits: Evidence for the northern rockhopper penguin eudyptes moseleyi being a sibling species
    • JOUVENTIN, P., R. CUTHBERT, AND R. OTTVALL. 2006. Genetic isolation and divergence in sexual traits: evidence for the northern rockhopper penguin Eudyptes moseleyi being a sibling species. Molecular Ecology 15:3413-3423.
    • (2006) Molecular Ecology , vol.15 , pp. 3413-3423
    • Jouventin, P.1    Cuthbert, R.2    Ottvall, R.3
  • 37
    • 33750969109 scopus 로고    scopus 로고
    • Comprehensive genetic analyses reveal evolutionary distinction of a mouse (Zapus hudsonius preblei) proposed for delisting from the U.S
    • KING, T. L., ET AL. 2006. Comprehensive genetic analyses reveal evolutionary distinction of a mouse (Zapus hudsonius preblei) proposed for delisting from the U.S. Endangered Species Act. Molecular Ecology 15:4331-4358.
    • (2006) Endangered Species Act. Molecular Ecology , vol.15 , pp. 4331-4358
    • King, T.L.1    Et, A.L.2
  • 38
    • 33847302458 scopus 로고    scopus 로고
    • Inconsistency of phylogenetic estimates from concatenated data under coalescence
    • KUBATKO, L., AND J. DEGNAN. 2007. Inconsistency of phylogenetic estimates from concatenated data under coalescence. Systematic Biology 56:17-24.
    • (2007) Systematic Biology , vol.56 , pp. 17-24
    • Kubatko, L.1    Degnan, J.2
  • 40
    • 0242487488 scopus 로고    scopus 로고
    • Performancebased selection of likelihood models for phylogeny estimation: BIC modified by decision theory
    • MININ, V., Z. ABDO, P. JOYCE, AND J. SULLIVAN. 2003. Performancebased selection of likelihood models for phylogeny estimation: BIC modified by decision theory. Systematic Biology 52:674-683.
    • (2003) Systematic Biology , vol.52 , pp. 674-683
    • Minin, V.1    Abdo, Z.2    Joyce, P.3    Sullivan, J.4
  • 41
    • 0001904414 scopus 로고    scopus 로고
    • The phylogenic species concept (sensu mishler and theriot): Monophyly, apomorphy, and phylogenetic species concepts
    • W. Wheeler and R. Meier, eds.). Columbia University Press, New York
    • MISHLER, B., AND E. THERIOT. 2000. The phylogenic species concept (sensu Mishler and Theriot): monophyly, apomorphy, and phylogenetic species concepts. Pp. 55-63 in Species concepts and phylogenetic theory: a debate (W. Wheeler and R. Meier, eds.). Columbia University Press, New York.
    • (2000) Species Concepts and Phylogenetic Theory: A Debate , pp. 55-63
    • Mishler, B.1    Theriot, E.2
  • 42
    • 11944269526 scopus 로고
    • Testing species phylogenies and phylogenetic methods with congruence
    • MIYAMOTO, M., AND W. FITCH. 1995. Testing species phylogenies and phylogenetic methods with congruence. Systematic Biology 44:64-76.
    • (1995) Systematic Biology , vol.44 , pp. 64-76
    • Miyamoto, M.1    Fitch, W.2
  • 43
    • 62349141971 scopus 로고    scopus 로고
    • Divergence in the face of gene flow: The case of two newts Amphibia, Salamandridae
    • NADACHOWSKA, K., AND W. BABIK. 2009. Divergence in the face of gene flow: the case of two newts (Amphibia, Salamandridae). Molecular Biology and Evolution 26:829-841.
    • (2009) Molecular Biology and Evolution , vol.26 , pp. 829-841
    • Nadachowska, K.1    Babik, W.2
  • 44
    • 0000655270 scopus 로고
    • Genetic distance between populations
    • NEI, M. 1972. Genetic distance between populations. American Naturalist 106:283-292.
    • (1972) American Naturalist , vol.106 , pp. 283-292
    • Nei, M.1
  • 45
    • 1642442709 scopus 로고    scopus 로고
    • Genetic assignment methods for direct, real-time estimation of migration rate: A simulation-based exploration of accuracy and power
    • PAETKAU, D., R. SLADE, M. BURDENS, AND A. ESTROUP. 2004. Genetic assignment methods for direct, real-time estimation of migration rate: a simulation-based exploration of accuracy and power. Molecular Ecology 13:55-65.
    • (2004) Molecular Ecology , vol.13 , pp. 55-65
    • Paetkau, D.1    Slade, R.2    Burdens, M.3    Estroup, A.4
  • 46
    • 0030042034 scopus 로고    scopus 로고
    • Mitochondrial DNA and the phylogeography of Newfoundland black bears
    • PAETKAU, D., AND C. STROBECK. 1996. Mitochondrial DNA and the phylogeography of Newfoundland black bears. Canadian Journal of Zoology 74:192-196.
    • (1996) Canadian Journal of Zoology , vol.74 , pp. 192-196
    • Paetkau, D.1    Strobeck, C.2
  • 47
    • 84860598591 scopus 로고    scopus 로고
    • From gene to organismal phylogeny: Reconciled trees and the gene tree/species tree problem
    • PAGE, R., AND M. A. CHARLESTON. 1997. From gene to organismal phylogeny: reconciled trees and the gene tree/species tree problem. Molecular Phylogenetics and Evolution 38:779-793.
    • (1997) Molecular Phylogenetics and Evolution , vol.38 , pp. 779-793
    • Page, R.1    Charleston, M.A.2
  • 49
    • 34249797574 scopus 로고    scopus 로고
    • The automation and evaluation of nested clade phylogeographic analysis
    • PANCHAL, M., AND M. BEAUMONT. 2007. The automation and evaluation of nested clade phylogeographic analysis. Evolution 61:1466-1480.
    • (2007) Evolution , vol.61 , pp. 1466-1480
    • Panchal, M.1    Beaumont, M.2
  • 50
    • 70349410398 scopus 로고    scopus 로고
    • Sampling error does not invalidate the yulecoalescent model for species delimitation a response to lohse 2009
    • PAPADOPOULOU, A., M. T. MONAGHAN, T. G. BARRACLOUGH, AND A. P. VOGLER. 2009. Sampling error does not invalidate the Yulecoalescent model for species delimitation. A response to Lohse (2009). Systematic Biology 58:442-444.
    • (2009) Systematic Biology , vol.58 , pp. 442-444
    • Papadopoulou, A.1    Monaghan, M.T.2    Barraclough, T.G.3    Vogler, A.P.4
  • 51
    • 0001773887 scopus 로고
    • The mammalian baculum: Hypotheses on the nature of bacular variability
    • PATTERSON, B., AND C. J. THAELER. 1982. The mammalian baculum: hypotheses on the nature of bacular variability. Journal of Mammalogy 63:1-15.
    • (1982) Journal of Mammalogy , vol.63 , pp. 1-15
    • Patterson, B.1    Thaeler, C.J.2
  • 52
    • 33845604583 scopus 로고    scopus 로고
    • Predicting species distributions from small numbers of occurrence records: A test case using cryptic geckos in Madagascar
    • PEARSON, R., C. RAXWORTHY, M. NAKAMURA, AND A. PETERSON. 2007. Predicting species distributions from small numbers of occurrence records: a test case using cryptic geckos in Madagascar. Journal of Biogeography 34:102-117.
    • (2007) Journal of Biogeography , vol.34 , pp. 102-117
    • Pearson, R.1    Raxworthy, C.2    Nakamura, M.3    Peterson, A.4
  • 53
    • 27944446350 scopus 로고    scopus 로고
    • Maximum entropy modeling of species geographic distributions
    • PHILLIPS, S., R. ANDERSON, AND R. SCHAPIRE. 2006. Maximum entropy modeling of species geographic distributions. Ecological Modeling 190:231-259.
    • (2006) Ecological Modeling , vol.190 , pp. 231-259
    • Phillips, S.1    Anderson, R.2    Schapire, R.3
  • 55
    • 34548444940 scopus 로고    scopus 로고
    • Sequence-based species delimitation for the DNA taxonomy of undescribed insects
    • PONS, J., ET AL. 2006. Sequence-based species delimitation for the DNA taxonomy of undescribed insects. Systematic Biology 55:595-609.
    • (2006) Systematic Biology , vol.55 , pp. 595-609
    • Pons, J.1    Et, A.L.2
  • 56
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: Testing the model of DNA substitution
    • POSADA, D., AND K. A. CRANDALL. 1998. MODELTEST: testing the model of DNA substitution. Bioinformatics 14:817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 57
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • PRITCHARD, J. K., M. STEPHENS, AND D. PETER. 2000. Inference of population structure using multilocus genotype data. Genetics 155:945-959.
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Peter, D.3
  • 59
    • 33644592024 scopus 로고    scopus 로고
    • Genetic relatedness of preble's meadow jumping mouse (zapus hudsonius preblei) to nearby subspecies of z hudsonius as inferred from variation in cranial morphology, mitochondrial dna and microsatellite dNA: Implications for taxonomy and conservation
    • RAMEY, R., H. LIU, C. EPPS, L. CARPENTER, AND J. WEHAUSEN. 2005. Genetic relatedness of Preble's meadow jumping mouse (Zapus hudsonius preblei) to nearby subspecies of Z. hudsonius as inferred from variation in cranial morphology, mitochondrial DNA and microsatellite DNA: implications for taxonomy and conservation. Animal Conservation 8:329-346.
    • (2005) Animal Conservation , vol.8 , pp. 329-346
    • Ramey, R.1    Liu, H.2    Epps, C.3    Carpenter, L.4    Wehausen, J.5
  • 60
    • 33746271573 scopus 로고    scopus 로고
    • Response to Vignieri et al 2006 should hypothesis testing or selective post hoc interpretation of results guide the allocation of conservation effort
    • RAMEY, R. I., J. D. WEHAUSEN, H. LIU, C. EPPS, AND L. CARPENTER. 2006. Response to Vignieri et al. (2006): should hypothesis testing or selective post hoc interpretation of results guide the allocation of conservation effort? Animal Conservation 9:244-247.
    • (2006) Animal Conservation , vol.9 , pp. 244-247
    • Ramey, R.I.1    Wehausen, J.D.2    Liu, H.3    Epps, C.4    Carpenter, L.5
  • 61
    • 34548530389 scopus 로고    scopus 로고
    • How king et al ( 2006) define an 'evolutionary distinction' of a mouse subspecies: A response
    • RAMEY, R. I., J. D.WEHAUSEN, H. LIU, C.EPPS, AND L. CARPENTER. 2007. How King et al. (2006) define an 'evolutionary distinction' of a mouse subspecies: a response. Molecular Ecology 16:3518-3521.
    • (2007) Molecular Ecology , vol.16 , pp. 3518-3521
    • Ramey, R.I.1    Wehausen, J.D.2    Liu, H.3    Epps, C.4    Carpenter, L.5
  • 62
    • 0036803348 scopus 로고    scopus 로고
    • Identifiability of parameters in mcmc bayesian inference of phylogeny
    • RANNALA, B. 2002. Identifiability of parameters in MCMC Bayesian inference of phylogeny. Systematic Biology 51:754-760.
    • (2002) Systematic Biology , vol.51 , pp. 754-760
    • Rannala, B.1
  • 64
    • 0000262278 scopus 로고
    • GENEPOP (version 1.2): Population genetics software for exact tests and ecumenicism
    • RAYMOND, M., AND F. ROUSSET. 1995. GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. Journal of Heredity 86:248-249.
    • (1995) Journal of Heredity , vol.86 , pp. 248-249
    • Raymond, M.1    Rousset, F.2
  • 65
    • 84555186848 scopus 로고    scopus 로고
    • Phylogeny estimation of the radiation of western north american chipmunks (tamias) in the face of introgression using reproductive protein genes
    • REID, N., J. R. DEMBOSKI, AND J. SULLIVAN. 2012. Phylogeny estimation of the radiation of western North American chipmunks (Tamias) in the face of introgression using reproductive protein genes. Systematic Biology 61:44-62.
    • (2012) Systematic Biology , vol.61 , pp. 44-62
    • Reid, N.1    Demboski, J.R.2    Sullivan, J.3
  • 66
    • 36248992880 scopus 로고    scopus 로고
    • Adding more ecology into species delimitation: Ecological niche models and phylogeography help define cryptic species in the black salamander aneides flavipunctatus
    • RISSLER, L. J., AND J. J. APODACA. 2007. Adding more ecology into species delimitation: ecological niche models and phylogeography help define cryptic species in the black salamander (Aneides flavipunctatus). Systematic Biology 56:924-942.
    • (2007) Systematic Biology , vol.56 , pp. 924-942
    • Rissler, L.J.1    Apodaca, J.J.2
  • 67
    • 17744398025 scopus 로고    scopus 로고
    • More genes or more taxa the relative contribution of gene number and taxon number to phylogenetic accuracy
    • ROKAS, A., AND S. CARROLL. 2005. More genes or more taxa? The relative contribution of gene number and taxon number to phylogenetic accuracy. Molecular Biology and Evolution 22: 1337-1344.
    • (2005) Molecular Biology and Evolution , vol.22 , pp. 1337-1344
    • Rokas, A.1    Carroll, S.2
  • 68
    • 0042697667 scopus 로고    scopus 로고
    • The shapes of neutral gene genealogies in two species: Probabilities of monophyly, paraphyly, and polyphyly in a coalescent model
    • ROSENBERG, N. 2003. The shapes of neutral gene genealogies in two species: probabilities of monophyly, paraphyly, and polyphyly in a coalescent model. Evolution 57:1465-1477.
    • (2003) Evolution , vol.57 , pp. 1465-1477
    • Rosenberg, N.1
  • 69
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • S. S. M. Krawets, ed.). Humana Press, Totowa, New Jersey.
    • ROZEN, S., AND H. SKALETSKY. 2000. Primer3 on the WWW for general users and for biologist programmers. Pp. 365-386 in Bioinformatics methods and protocols: methods in molecular biology (S. S. M. Krawets, ed.). Humana Press, Totowa, New Jersey
    • (2000) Bioinformatics Methods and Protocols: Methods in Molecular Biology , pp. 365-386
    • Rozen, S.1    Skaletsky, H.2
  • 70
    • 33746354571 scopus 로고    scopus 로고
    • Utility of mitochondrial DNA barcodes in species conservation
    • RUBINOFF, D. 2006. Utility of mitochondrial DNA barcodes in species conservation. Conservation Biology 20:1026-1033.
    • Conservation Biology , vol.20 , Issue.2006 , pp. 1026-1033
    • Rubinoff, D.1
  • 71
    • 0000120766 scopus 로고
    • Estimating the dimensions of a model
    • SCHWARTZ, G. 1978. Estimating the dimensions of a model. Annals of Statistics 6:461-464.
    • (1978) Annals of Statistics , vol.6 , pp. 461-464
    • Schwartz, G.1
  • 72
    • 0001639602 scopus 로고
    • Phylogenetic relationships of north american ursids based on analysis of mitochondrial dna
    • SHIELDS, G. F., AND T. D. KOCHER. 1991. Phylogenetic relationships of North American ursids based on analysis of mitochondrial DNA. Evolution 45:218-221.
    • (1991) Evolution , vol.45 , pp. 218-221
    • Shields, G.F.1    Kocher, T.D.2
  • 73
    • 79951899359 scopus 로고    scopus 로고
    • Guidelines of the american society of mammalogists for the use of wild mammals in research
    • And The Animal Care And Use Committee Of The American Society Of Mammalogists
    • SIKES, R. S., W. L. GANNON, AND THE ANIMAL CARE AND USE COMMITTEE OF THE AMERICAN SOCIETY OF MAMMALOGISTS. 2011. Guidelines of the American Society of Mammalogists for the use of wild mammals in research. Journal of Mammalogy 92:235-253.
    • (2011) Journal of Mammalogy , vol.92 , pp. 235-253
    • Sikes, R.S.1    Gannon, W.L.2
  • 74
    • 0000456760 scopus 로고
    • The species concept
    • SIMPSON, G. 1951. The species concept. Evolution 5:285-298.
    • (1951) Evolution , vol.5 , pp. 285-298
    • Simpson, G.1
  • 75
    • 0031445235 scopus 로고    scopus 로고
    • Testing species boundaries in biodiversity studies
    • SITES, J., AND K. CRANDALL. 1997. Testing species boundaries in biodiversity studies. Conservation Biology 11:1289-1297.
    • (1997) Conservation Biology , vol.11 , pp. 1289-1297
    • Sites, J.1    Crandall, K.2
  • 76
    • 34547702658 scopus 로고    scopus 로고
    • Delimiting cohesion species: Extreme population structuring and the role of ecological interchangeability
    • STOCKMAN, A., AND J. BOND. 2007. Delimiting cohesion species: extreme population structuring and the role of ecological interchangeability. Molecular Ecology 16:3374-3392.
    • (2007) Molecular Ecology , vol.16 , pp. 3374-3392
    • Stockman, A.1    Bond, J.2
  • 77
    • 0039466725 scopus 로고    scopus 로고
    • Combining data with different distribution of among-Site rate variation
    • SULLIVAN, J. 1996. Combining data with different distribution of among-site rate variation. Systematic Biology 45:375-380.
    • (1996) Systematic Biology , vol.45 , pp. 375-380
    • Sullivan, J.1
  • 78
    • 0002618746 scopus 로고    scopus 로고
    • Are guinea pigs rodents? the importance of adequate models in molecular phylogenetics
    • SULLIVAN, J., AND D. L. SWOFFORD. 1997. Are guinea pigs rodents? The importance of adequate models in molecular phylogenetics. Journal of Mammalian Evolution 4:77-86.
    • (1997) Journal of Mammalian Evolution , vol.4 , pp. 77-86
    • Sullivan, J.1    Swofford, D.L.2
  • 82
    • 0002983450 scopus 로고
    • The meaning of species and speciation: A genetic perspective
    • D. Otte and J. Endler, eds.). Sinauer Associates, Inc., Publishers, Sunderland, Massachusetts
    • TEMPLETON, A. 1989. The meaning of species and speciation: a genetic perspective. Pp. 159-181 in Speciation and its consequences (D. Otte and J. Endler, eds.). Sinauer Associates, Inc., Publishers, Sunderland, Massachusetts.
    • (1989) Speciation and Its Consequences , pp. 159-181
    • Templeton, A.1
  • 83
    • 0035047252 scopus 로고    scopus 로고
    • Using phylogeographic analyses of gene trees to test species status and processes
    • TEMPLETON, A. 2001. Using phylogeographic analyses of gene trees to test species status and processes. Molecular Ecology 10:779-791.
    • (2001) Molecular Ecology , vol.10 , pp. 779-791
    • Templeton, A.1
  • 84
    • 0038305851 scopus 로고    scopus 로고
    • Endangered and threatened wildlife and plants; Determination of threatened status for the northern Idaho ground squirrel
    • United States Fish Wildlife Service
    • UNITED STATES FISH AND WILDLIFE SERVICE. 2000. Endangered and threatened wildlife and plants; determination of threatened status for the northern Idaho ground squirrel. Federal Register 65:17779-17786.
    • (2000) Federal Register , vol.65 , pp. 17779-17786
  • 85
    • 33746314234 scopus 로고    scopus 로고
    • Mistaken view of taxonomic validity undermines conservation of an evolutionarily distinctive mouse: A response to ramey et al
    • VIGNIERI, S., ET AL. 2006. Mistaken view of taxonomic validity undermines conservation of an evolutionarily distinctive mouse: a response to Ramey et al. Animal Conservation 9:237-243.
    • (2006) Animal Conservation , vol.9 , pp. 237-243
    • Vignieri, S.1    Et, A.L.2
  • 86
    • 33747364038 scopus 로고    scopus 로고
    • Testing hypotheses of speciation in the plethodon jordani species complex with allozymes and mitochondrial dna sequences
    • WEISROCK, D., AND A. LARSON. 2006. Testing hypotheses of speciation in the Plethodon jordani species complex with allozymes and mitochondrial DNA sequences. Biological Journal of the Linnaean Society 89:25-51.
    • (2006) Biological Journal of the Linnaean Society , vol.89 , pp. 25-51
    • Weisrock, D.1    Larson, A.2
  • 88
    • 0002830474 scopus 로고
    • The subspecies concept and its taxonomic application
    • WILSON, E., AND W. BROWN. 1953. The subspecies concept and its taxonomic application. Systematic Zoology 2:97-111.
    • (1953) Systematic Zoology , vol.2 , pp. 97-111
    • Wilson, E.1    Brown, W.2
  • 89
    • 0037355101 scopus 로고    scopus 로고
    • Bayesian inference of recent migration rates using multilocus genotypes
    • WILSON, G. A., AND B. RANNALA. 2003. Bayesian inference of recent migration rates using multilocus genotypes. Genetics 163:1177-1191.
    • (2003) Genetics , vol.163 , pp. 1177-1191
    • Wilson, G.A.1    Rannala, B.2
  • 90
    • 0035677674 scopus 로고    scopus 로고
    • The genic view of the process of speciation
    • WU, C.-I. 2001. The genic view of the process of speciation. Journal of Evolutionary Biology. 14:851-865.
    • (2001) Journal of Evolutionary Biology , vol.14 , pp. 851-865
    • Wu, C.-I.1
  • 92
    • 0026301389 scopus 로고
    • Taxonomy and distribution of the idaho ground squirrel, spermophilus brunneus
    • YENSEN, E. 1991. Taxonomy and distribution of the Idaho ground squirrel, Spermophilus brunneus. Journal of Mammalogy 72:583-600.
    • (1991) Journal of Mammalogy , vol.72 , pp. 583-600
    • Yensen, E.1
  • 96
    • 7444261392 scopus 로고    scopus 로고
    • Phylogenetic relationships within mammalian order carnivora indicated by sequences of two nuclear dna genes
    • YU, L., Q. W. LI, O. RYDER, AND Y. ZHANG. 2004. Phylogenetic relationships within mammalian order Carnivora indicated by sequences of two nuclear DNA genes. Molecular Phylogenetics and Evolution 33:694-705.
    • (2004) Molecular Phylogenetics and Evolution , vol.33 , pp. 694-705
    • Yu, L.1    Li, Q.W.2    Ryder, O.3    Zhang, Y.4
  • 97
    • 1442291633 scopus 로고    scopus 로고
    • The role of subspecies in obscuring avian biological diversity and misleading conservation policy
    • ZINK, R. M. 2004. The role of subspecies in obscuring avian biological diversity and misleading conservation policy. Proceedings of the Royal Society of London, B. Biological Sciences 271:561-564.
    • (2004) Proceedings of the Royal Society of London B. Biological Sciences , vol.271 , pp. 561-564
    • Zink, R.M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.