메뉴 건너뛰기




Volumn 64, Issue 1, 2012, Pages 198-203

Deep sequencing of small RNAs confirms an annelid affinity of Myzostomida

Author keywords

Annelida; Lophotrochozoa; MiRNA; Myzostomida; Rare genomic changes

Indexed keywords

MICRORNA; PRIMER DNA;

EID: 84860562634     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2012.03.017     Document Type: Article
Times cited : (26)

References (74)
  • 1
    • 4644309196 scopus 로고    scopus 로고
    • The functions of animal microRNAs
    • Ambros V. The functions of animal microRNAs. Nature 2004, 431:350-355.
    • (2004) Nature , vol.431 , pp. 350-355
    • Ambros, V.1
  • 3
    • 1942435249 scopus 로고    scopus 로고
    • Micromanagers of gene expression: the potentially widespread influence of metazoan microRNAs
    • Bartel D.P., Chen C.Z. Micromanagers of gene expression: the potentially widespread influence of metazoan microRNAs. Nat. Rev. Genet. 2004, 5:396-400.
    • (2004) Nat. Rev. Genet. , vol.5 , pp. 396-400
    • Bartel, D.P.1    Chen, C.Z.2
  • 4
    • 35449003644 scopus 로고    scopus 로고
    • The role of character loss in phylogenetic reconstruction as exemplified for the Annelida
    • Bleidorn C. The role of character loss in phylogenetic reconstruction as exemplified for the Annelida. J. Zool. Syst. Evol. Res. 2007, 45:299-307.
    • (2007) J. Zool. Syst. Evol. Res. , vol.45 , pp. 299-307
    • Bleidorn, C.1
  • 7
    • 40549132522 scopus 로고    scopus 로고
    • Beyond linear sequence comparisons: the use of genomic characters for phylogenetic reconstruction
    • Boore J.L., Fuerstenberg S.I. Beyond linear sequence comparisons: the use of genomic characters for phylogenetic reconstruction. Philos. Trans. Roy. Soc. B, Biol. Sci. 2008, 363:1445-1451.
    • (2008) Philos. Trans. Roy. Soc. B, Biol. Sci. , vol.363 , pp. 1445-1451
    • Boore, J.L.1    Fuerstenberg, S.I.2
  • 12
    • 77954394167 scopus 로고    scopus 로고
    • The micro RNA miR-124 controls gene expression in the sensory nervous system of Caenorhabditis elegans
    • Clark A.M., Goldstein L.D., Tevlin M., Tavare S., Shaham S., Miska E.A. The micro RNA miR-124 controls gene expression in the sensory nervous system of Caenorhabditis elegans. Nucl. Acids Res. 2010, 38:3780-3793.
    • (2010) Nucl. Acids Res. , vol.38 , pp. 3780-3793
    • Clark, A.M.1    Goldstein, L.D.2    Tevlin, M.3    Tavare, S.4    Shaham, S.5    Miska, E.A.6
  • 13
    • 58549099701 scopus 로고    scopus 로고
    • Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution
    • Dai Z., Chen Z., Ye H., Zhou L., Cao L., Wang Y., Peng S., Chen L. Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution. Evol. Dev. 2009, 11:41-49.
    • (2009) Evol. Dev. , vol.11 , pp. 41-49
    • Dai, Z.1    Chen, Z.2    Ye, H.3    Zhou, L.4    Cao, L.5    Wang, Y.6    Peng, S.7    Chen, L.8
  • 15
    • 77957244650 scopus 로고    scopus 로고
    • Search and clustering orders of magnitude faster than BLAST
    • Edgar R.C. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 2010, 26:2460-2461.
    • (2010) Bioinformatics , vol.26 , pp. 2460-2461
    • Edgar, R.C.1
  • 17
    • 18844435622 scopus 로고    scopus 로고
    • Myzostomida: a review of the phylogeny and ultrastructure
    • Eeckhaut I., Lanterbecq D. Myzostomida: a review of the phylogeny and ultrastructure. Hydrobiologia 2005, 535(536):253-275.
    • (2005) Hydrobiologia , vol.535 , Issue.536 , pp. 253-275
    • Eeckhaut, I.1    Lanterbecq, D.2
  • 19
    • 0345446686 scopus 로고    scopus 로고
    • Larval development of Myzostoma cirriferum (Myzostomida)
    • Eeckhaut I., Fievez M., Müller M.C. Larval development of Myzostoma cirriferum (Myzostomida). J. Morph. 2003, 258:269-283.
    • (2003) J. Morph. , vol.258 , pp. 269-283
    • Eeckhaut, I.1    Fievez, M.2    Müller, M.C.3
  • 20
    • 82255195530 scopus 로고    scopus 로고
    • The Cambrian conundrum: early divergence and later ecological success in the early history of animals
    • Erwin D.H., Laflamme M., Tweedt S.M., Sperling E.A., Pisani D., Peterson K.J. The Cambrian conundrum: early divergence and later ecological success in the early history of animals. Science 2011, 334:1091-1097.
    • (2011) Science , vol.334 , pp. 1091-1097
    • Erwin, D.H.1    Laflamme, M.2    Tweedt, S.M.3    Sperling, E.A.4    Pisani, D.5    Peterson, K.J.6
  • 21
    • 84959795073 scopus 로고
    • Phylogenetic analysis under Dollo's Law
    • Farris J.S. Phylogenetic analysis under Dollo's Law. Syst. Zool. 1977, 26:77-88.
    • (1977) Syst. Zool. , vol.26 , pp. 77-88
    • Farris, J.S.1
  • 27
    • 76749146937 scopus 로고    scopus 로고
    • Identification and characterization of microRNAs and endogeneous siRNAs in Schistosoma japonicum
    • Hao L., Cai P., Jiang N., Wang H., Chen Q. Identification and characterization of microRNAs and endogeneous siRNAs in Schistosoma japonicum. BMC Genom. 2010, 11:55.
    • (2010) BMC Genom. , vol.11 , pp. 55
    • Hao, L.1    Cai, P.2    Jiang, N.3    Wang, H.4    Chen, Q.5
  • 28
    • 84856025326 scopus 로고    scopus 로고
    • Exploiting gene families for phylogenomic analysis of myzostomid transcriptome data
    • Hartmann, S., Helm, C., Nickel, B., Meyer, M., Struck, T.H., Tiedemann, R., Selbig, J., Bleidorn, C., 2012. Exploiting gene families for phylogenomic analysis of myzostomid transcriptome data. PLoS ONE 7(1), e29843. http://dx.doi.org/10.1371/journal.pone.0029843.
    • (2012) PLoS ONE. , vol.7 , Issue.1
    • Hartmann, S.1    Helm, C.2    Nickel, B.3    Meyer, M.4    Struck, T.H.5    Tiedemann, R.6    Selbig, J.7    Bleidorn, C.8
  • 30
    • 78650592620 scopus 로고    scopus 로고
    • MicroRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of ancestral vertebrate
    • Heimberg A.M., Cowper-Sallari R., Semon M., Donoghue P.C.J., Peterson K.J. MicroRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of ancestral vertebrate. Proc. Natl. Acad. Sci. USA 2010, 107:19379-19383.
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 19379-19383
    • Heimberg, A.M.1    Cowper-Sallari, R.2    Semon, M.3    Donoghue, P.C.J.4    Peterson, K.J.5
  • 32
    • 33747871855 scopus 로고    scopus 로고
    • Hairpins in a Haystack: recognizing microRNA precursors in comparative genomics data
    • Hertel J., Stadler P.F. Hairpins in a Haystack: recognizing microRNA precursors in comparative genomics data. Bioinformatics 2006, 22:e197-e202.
    • (2006) Bioinformatics , vol.22
    • Hertel, J.1    Stadler, P.F.2
  • 36
    • 0345047006 scopus 로고
    • Zur Kenntnis der Parapodialborsten bei Myzostomum
    • Jägersten G. Zur Kenntnis der Parapodialborsten bei Myzostomum. Zool. Bidrag fran Uppsala 1936, 16:283-294.
    • (1936) Zool. Bidrag fran Uppsala , vol.16 , pp. 283-294
    • Jägersten, G.1
  • 37
    • 0001946824 scopus 로고
    • Zur Kenntnis der Morphologie, Entwicklung und Taxonomie der Myzostomida
    • Jägersten G. Zur Kenntnis der Morphologie, Entwicklung und Taxonomie der Myzostomida. Nova Acta Reg. Soc. Sci. Ups 1940, 11:1-84.
    • (1940) Nova Acta Reg. Soc. Sci. Ups , vol.11 , pp. 1-84
    • Jägersten, G.1
  • 38
    • 4644266187 scopus 로고    scopus 로고
    • When molecules and morphology clash: reconciling conflicting phylogenies of the Metazoa by considering secondary character loss
    • Jenner R.A. When molecules and morphology clash: reconciling conflicting phylogenies of the Metazoa by considering secondary character loss. Evol. Dev. 2004, 6:372-378.
    • (2004) Evol. Dev. , vol.6 , pp. 372-378
    • Jenner, R.A.1
  • 39
    • 70350023532 scopus 로고    scopus 로고
    • Improved base calling for the Illumina Genome Analyzer using machine learning strategies
    • Kircher M., Stenzel U., Kelso J. Improved base calling for the Illumina Genome Analyzer using machine learning strategies. Genome Biol. 2009, 10:R83.
    • (2009) Genome Biol. , vol.10
    • Kircher, M.1    Stenzel, U.2    Kelso, J.3
  • 40
    • 78651293534 scopus 로고    scopus 로고
    • MiRBase: integrating microRNA annotation and deep-sequencing data
    • Kozomara A., Griffiths-Jones S. MiRBase: integrating microRNA annotation and deep-sequencing data. Nucl. Acids Res. 2011, 39(Suppl. 1):D152-D157.
    • (2011) Nucl. Acids Res. , vol.39 , Issue.SUPPL. 1
    • Kozomara, A.1    Griffiths-Jones, S.2
  • 41
    • 33744984621 scopus 로고    scopus 로고
    • Molecular phylogenetic analyses indicate multiple independent emergences of parasitism in Myzostomida (Protostomia)
    • Lanterbecq D., Rouse G.W., Milinkovitch M.C., Eeckhaut I. Molecular phylogenetic analyses indicate multiple independent emergences of parasitism in Myzostomida (Protostomia). Syst. Biol. 2006, 50:208-227.
    • (2006) Syst. Biol. , vol.50 , pp. 208-227
    • Lanterbecq, D.1    Rouse, G.W.2    Milinkovitch, M.C.3    Eeckhaut, I.4
  • 42
    • 38349159601 scopus 로고    scopus 로고
    • Locomotion and fine structure of parapodia in Myzostoma cirriferum (Myzostomida)
    • Lanterbecq D., Bleidorn C., Michel S., Eeckhaut I. Locomotion and fine structure of parapodia in Myzostoma cirriferum (Myzostomida). Zoomorphology 2008, 127:59-68.
    • (2008) Zoomorphology , vol.127 , pp. 59-68
    • Lanterbecq, D.1    Bleidorn, C.2    Michel, S.3    Eeckhaut, I.4
  • 43
    • 34247565615 scopus 로고    scopus 로고
    • The tumor suppressor microRNA let-7 represses the HMGA2 oncogene
    • Lee Y.S., Dutta A. The tumor suppressor microRNA let-7 represses the HMGA2 oncogene. Genes Dev. 2007, 21:1025-1030.
    • (2007) Genes Dev. , vol.21 , pp. 1025-1030
    • Lee, Y.S.1    Dutta, A.2
  • 44
    • 34248638447 scopus 로고    scopus 로고
    • Evolutionary conservation of microRNA regulatory circuits: an examination of microRNA gene complexity and conserved microRNA-target interactions through metazoan phylogeny
    • Lee C.T., Risom T., Struss W.M. Evolutionary conservation of microRNA regulatory circuits: an examination of microRNA gene complexity and conserved microRNA-target interactions through metazoan phylogeny. DNA Cell Biol. 2007, 26:209-218.
    • (2007) DNA Cell Biol. , vol.26 , pp. 209-218
    • Lee, C.T.1    Risom, T.2    Struss, W.M.3
  • 47
    • 0033591465 scopus 로고    scopus 로고
    • Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
    • Mathews D.H., Sabina J., Zuker M., Turner D.H. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J. Mol. Biol. 1999, 288:911-940.
    • (1999) J. Mol. Biol. , vol.288 , pp. 911-940
    • Mathews, D.H.1    Sabina, J.2    Zuker, M.3    Turner, D.H.4
  • 48
    • 77956285690 scopus 로고    scopus 로고
    • Illumina sequencing library preparation for highly multiplexed target capture and sequencing
    • pdb prot5448
    • Meyer M., Kircher M. Illumina sequencing library preparation for highly multiplexed target capture and sequencing. Cold Spring Harb. Protoc. 2010, 6. pdb prot5448.
    • (2010) Cold Spring Harb. Protoc. , vol.6
    • Meyer, M.1    Kircher, M.2
  • 49
    • 17344391258 scopus 로고    scopus 로고
    • Structure of the nervous system of Myzostoma cirriferum (Annelida) as revealed by immunohistochemistry and cLSM analyses
    • Müller M.C., Westheide W. Structure of the nervous system of Myzostoma cirriferum (Annelida) as revealed by immunohistochemistry and cLSM analyses. J. Morph. 2000, 245:87-98.
    • (2000) J. Morph. , vol.245 , pp. 87-98
    • Müller, M.C.1    Westheide, W.2
  • 50
    • 60549084522 scopus 로고    scopus 로고
    • Mitochondrial genome sequence and gene order of Sipunculus nudus give additional support for an inclusion of Sipuncula into Annelida
    • Mwinyi A., Meyer A., Bleidorn C., Lieb B., Bartolomaeus T., Podsiadlowski L. Mitochondrial genome sequence and gene order of Sipunculus nudus give additional support for an inclusion of Sipuncula into Annelida. BMC Genom. 2009, 10:27.
    • (2009) BMC Genom. , vol.10 , pp. 27
    • Mwinyi, A.1    Meyer, A.2    Bleidorn, C.3    Lieb, B.4    Bartolomaeus, T.5    Podsiadlowski, L.6
  • 51
    • 33748133008 scopus 로고    scopus 로고
    • MicroRNAs from the planarian Schmidtea mediterranea: a model system for stem cell biology
    • Palakodeti D., Smielewska M., Graveley B.R. MicroRNAs from the planarian Schmidtea mediterranea: a model system for stem cell biology. RNA 2006, 12:1640-1649.
    • (2006) RNA , vol.12 , pp. 1640-1649
    • Palakodeti, D.1    Smielewska, M.2    Graveley, B.R.3
  • 52
    • 33745135433 scopus 로고    scopus 로고
    • Lophotrochozoan phylogeny assessed with LSU and SSU data: evidence of lophophorate polyphyly
    • Passamaneck Y., Halanych K.M. Lophotrochozoan phylogeny assessed with LSU and SSU data: evidence of lophophorate polyphyly. Mol. Phylogenet. Evol. 2006, 40:20-28.
    • (2006) Mol. Phylogenet. Evol. , vol.40 , pp. 20-28
    • Passamaneck, Y.1    Halanych, K.M.2
  • 54
    • 70349320089 scopus 로고    scopus 로고
    • MicroRNAs and metazoan macroevolution: insights into canalization, complexity, and the Cambrian explosion
    • Peterson K.J., Dietrich M.R., McPeek M.A. MicroRNAs and metazoan macroevolution: insights into canalization, complexity, and the Cambrian explosion. Bioessays 2009, 31:736-747.
    • (2009) Bioessays , vol.31 , pp. 736-747
    • Peterson, K.J.1    Dietrich, M.R.2    McPeek, M.A.3
  • 56
    • 33846052292 scopus 로고    scopus 로고
    • Evidence for a microRNA expansion in the bilaterian ancestor
    • Prochnik S.E., Rokhsar D.S., Aboobaker A.A. Evidence for a microRNA expansion in the bilaterian ancestor. Dev. Genes Evol. 2007, 217:73-77.
    • (2007) Dev. Genes Evol. , vol.217 , pp. 73-77
    • Prochnik, S.E.1    Rokhsar, D.S.2    Aboobaker, A.A.3
  • 57
    • 0033793019 scopus 로고    scopus 로고
    • Rare genomic changes as a tool for phylogenetics
    • Rokas A., Holland P.W.H. Rare genomic changes as a tool for phylogenetics. Trends Ecol. Evol. 2000, 15:454-459.
    • (2000) Trends Ecol. Evol. , vol.15 , pp. 454-459
    • Rokas, A.1    Holland, P.W.H.2
  • 59
    • 0008411413 scopus 로고
    • Zur Anatomie und Entwicklungsgeschichte der Gattung Myzostoma
    • Semper C. Zur Anatomie und Entwicklungsgeschichte der Gattung Myzostoma. Z. Wiss. Zool. 1858, 9:48-65.
    • (1858) Z. Wiss. Zool. , vol.9 , pp. 48-65
    • Semper, C.1
  • 60
    • 33845608152 scopus 로고    scopus 로고
    • The phylogenetic distribution of metazoan microRNAs: insights into evolutionary complexity and constraint
    • Sempere L.F., Cole C.N., McPeek M.A., Peterson K.J. The phylogenetic distribution of metazoan microRNAs: insights into evolutionary complexity and constraint. J. Exp. Zool. B. Mol. Dev. Evol. 2006, 306:575-588.
    • (2006) J. Exp. Zool. B. Mol. Dev. Evol. , vol.306 , pp. 575-588
    • Sempere, L.F.1    Cole, C.N.2    McPeek, M.A.3    Peterson, K.J.4
  • 61
    • 34548539200 scopus 로고    scopus 로고
    • Phylogenetic distribution of micro-RNAs supports the basal position of acoel flatworms and the polyphyly of Platyhelminthes
    • Sempere L.F., Martinez P., Cole C., Baguñà J., Peterson K.J. Phylogenetic distribution of micro-RNAs supports the basal position of acoel flatworms and the polyphyly of Platyhelminthes. Evol. Dev. 2007, 9:409-415.
    • (2007) Evol. Dev. , vol.9 , pp. 409-415
    • Sempere, L.F.1    Martinez, P.2    Cole, C.3    Baguñà, J.4    Peterson, K.J.5
  • 63
    • 84919715621 scopus 로고    scopus 로고
    • MicroRNAs and metazoan phylogeny: big trees from little genes
    • Oxford University Press, M.J. Telford, D.T.J. Littlewood (Eds.)
    • Sperling E.A., Peterson K.J. MicroRNAs and metazoan phylogeny: big trees from little genes. Animal Evolution - Genomes, Trees and Fossils 2009, 157-170. Oxford University Press. M.J. Telford, D.T.J. Littlewood (Eds.).
    • (2009) Animal Evolution - Genomes, Trees and Fossils , pp. 157-170
    • Sperling, E.A.1    Peterson, K.J.2
  • 65
    • 79955515495 scopus 로고    scopus 로고
    • Molecular paleobiological insights into the origin of the Brachiopoda
    • Sperling E.A., Pisani D., Peterson K.J. Molecular paleobiological insights into the origin of the Brachiopoda. Evol. Dev. 2011, 13:290-303.
    • (2011) Evol. Dev. , vol.13 , pp. 290-303
    • Sperling, E.A.1    Pisani, D.2    Peterson, K.J.3
  • 69
    • 0035752767 scopus 로고    scopus 로고
    • A phylogenetic foundation for comparative mammalian genomics
    • Waddell P.J., Kishino H., Ota R. A phylogenetic foundation for comparative mammalian genomics. Genome Inform. 2001, 12:141-154.
    • (2001) Genome Inform. , vol.12 , pp. 141-154
    • Waddell, P.J.1    Kishino, H.2    Ota, R.3
  • 70
    • 0343469328 scopus 로고
    • Phosphannulus on Paleozoic crinoids stems
    • Welch J.R. Phosphannulus on Paleozoic crinoids stems. J. Paleont. 1976, 50:218-225.
    • (1976) J. Paleont. , vol.50 , pp. 218-225
    • Welch, J.R.1
  • 72
    • 15944413439 scopus 로고    scopus 로고
    • Ontogeny discombobulates phylogeny: paedomorphosis and higher-level salamander relationships
    • Wiens J.J., Bonett R.M., Chippindale P.T. Ontogeny discombobulates phylogeny: paedomorphosis and higher-level salamander relationships. Syst. Biol. 2005, 54:91-110.
    • (2005) Syst. Biol. , vol.54 , pp. 91-110
    • Wiens, J.J.1    Bonett, R.M.2    Chippindale, P.T.3
  • 73
    • 0034956458 scopus 로고    scopus 로고
    • The interrelationships of metazoan parasites: a review of phylum- and higher-level hypotheses from recent morphological and molecular phylogenetic analyses
    • Zrzavy J. The interrelationships of metazoan parasites: a review of phylum- and higher-level hypotheses from recent morphological and molecular phylogenetic analyses. Folia Parasitol. 2001, 48:81-103.
    • (2001) Folia Parasitol. , vol.48 , pp. 81-103
    • Zrzavy, J.1
  • 74
    • 0034948242 scopus 로고    scopus 로고
    • Myzostomida are not annelids: molecular and morphological support for a clade of animals with anterior sperm flagella
    • Zrzavy J., Hypsa V., Tietz D. Myzostomida are not annelids: molecular and morphological support for a clade of animals with anterior sperm flagella. Cladistics 2001, 17:1-29.
    • (2001) Cladistics , vol.17 , pp. 1-29
    • Zrzavy, J.1    Hypsa, V.2    Tietz, D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.