The role of character loss in phylogenetic reconstruction as exemplified for the Annelida

Journal of Zoological Systematics and Evolutionary Research

Volumn 45, Issue 4, 2007, Pages 299-307

  Bleidorn, C ^a  

^a UNIVERSITY OF POTSDAM   (Germany)

Author keywords

Annelida; Character Loss; Echiura; Heterochrony; Phylogeny; Sipuncala

Indexed keywords

CHARACTER DISPLACEMENT; CLADISTICS; HETEROCHRONY (ONTOGENY); HOMOLOGY; MORPHOLOGY; PHYLOGENY; POLYCHAETE; RECONSTRUCTION;

ANNELIDA; ARENICOLIDAE; ECHIURA; ORBINIIDAE; POLYCHAETA; SIPUNCULA;

EID: 35449003644     PISSN: 09475745     EISSN: 14390469     Source Type: Journal    
DOI: 10.1111/j.1439-0469.2007.00425.x     Document Type: Article

References (105)

1. Almeida WO, Christoffersen ML, Amorim DS, Garraffoni ARS, Silva GS (2003) Polychaeta, Annelida, and Articulata are not monophyletic: articulating the Metameria (Metazoa, Coelomata). Rev Brasil Zool 20 : 23 57.
2. Ax P (1987) Das Phylogenetische System. Gustav Fischer Verlag, Stuttgart.
3. Ax P (1999) Das System der Metazoa II. Gustav Fischer Verlag, Stuttgart.
4. Bartolomaeus T (1998) Chaetogenesis in polychaetous Annelida - significance for annelid systematics and the position of the Pogonophora. Zoology 100 : 348 364.
5. Bartolomaeus T, Meyer K (1999) Zur Phylogenie der Arenicolidae. Cour Forsch-Inst Senckenberg 215 : 23 29.
6. Bartolomaeus T, Purschke G, Hausen H (2005) Polychaete phylogeny based on morphological data - a comparison of current attempts. Hydrobiologia 535/536 : 341 356.
7. Bateman RM (1996) Nonfloral homoplasy and evolutionary scenarios in living and fossil land plants. In : Sanderson MJ, Hufford L (eds Homoplasy: The Recurrence of Similarity in Evolution. Academic Press, London, pp. 91 130.
8. Beesley PL, Ross GJB, Glasby CJ (2000) Polychaetes & Allies: The Southern Synthesis. Fauna of Australia. Vol. 4A Polychaeta, Myzostomida, Pogonophora, Echiura, Sipuncula. CSIRO Publishing, Melbourne.
9. Blake JA (1996) Chapter I. Family Orbiniidae Hartman, 1942. In : Blake JA, Hilbig B, Scott PH (eds Taxonomic Atlas of the Santa Maria Basin and Western Santa Barbara Channel. Vol. 6. Annelida Part 3. Polychaeta: Orbiniidae to Cossuridae, Santa Barbara Museum of Natural History, Santa Barbara, CA, pp. 1 23.
10. Blake JA (2000) A new genus and species of polychaete worm (Family Orbiniidae) from methane seeps in the Gulf of Mexico, with a review of the systematics and phylogenetic interrelationships of the genera of Orbiniidae. Cah Biol Mar 41 : 435 449.
11. Bleidorn C (2005) Systematic relationships and evolution of Orbiniidae (Annelida, Polychaeta) based on molecular data. Zool J Linn Soc 144 : 59 73.
12. Bleidorn C, Vogt L, Bartolomaeus T (2003a) New insights into polychaete phylogeny (Annelida) inferred from 18S rDNA sequences. Mol Phylogenet Evol 29 : 279 288.
13. Bleidorn C, Vogt L, Bartolomaeus T (2003b) A contribution to polychaete phylogeny using 18S rDNA sequence data. J Zool Syst Evol Res 41 : 186 195.
14. Bleidorn C, Vogt L, Bartolomaeus T (2005) Molecular phylogeny of lugworns (Annelida, Arenicolidae) inferred from three genes. Mol Phylogenet Evol 34 : 673 679.
15. Bleidorn C, Podsiadlowski L, Bartolomaeus T (2006) The complete mitochondrial genome of the orbiniid polychaete Orbinia latreillii (Annelida, Orbiniidae) - a novel gene order for Annelida and implications for annelid phylogeny. Gene 370 : 96 103.
16. Boore JL, Staton JL (2002) The mitochondrial genome of the sipunculid Phascolopsis gouldii supports its association with Annelida rather than Mollusca. Mol Biol Evol 19 : 127 137.
17. Brown S, Rouse GW, Hutchings PA, Colgan D (1999) Assessing the usefulness of histone H3, U2 snRNA and 28S rDNA in analyses of polychaete relationships. Austr J Zool 47 : 499 516.
18. Colgan DJ, Hutchings PA, Braune M (2006) A multigene framework for polychaete phylogenetic studies. Org Div Evol 6 : 220 235.
19. Cunningham CW, Omland KE, Oakley TH (1998) Reconstructing ancestral character states: a critical reappraisal. Trends Ecol Evol 13 : 361 366.
20. Dales RP (1962) The polychaete stomodaeum and the interrelationships of the families of Polychaeta. Proc Zool Soc Lond B139 : 389 428.
21. Darwin CR (1859) On the Origin of Species by Means of Natural Selection, or the Preservation of Favoured Races in the Struggle for Life. John Murray, London.
22. Day JH (1967) A Monograph on the Polychaeta of Southern Africa. British Museum (Natural History). Publication 656, London.
23. DeGusta D (2004) A method for estimating the relative importance of characters in a cladistic analysis. Syst Biol 53 : 529 532.
24. Donoghue MJ, Ree RH (2000) Homoplasy and developmental constraint: a model and example from plants. Am Zool 40 : 759 769.
25. Eibye-Jacobsen D, Kristensen RM (1994) A new genus and species of Dorvilleidae (Annelida, Polychaeta) from Bermuda, with a phylogenetic analysis of Dorvilleidae, Iphitimidae and Dinophilidae. Zool Scr 23 : 107 131.
26. Emerson SB, Hastings PA (1998) Morphological correlations in evolution: consequences for phylogenetic analyses. Q Rev Biol 73 : 141 162.
27. Fauchald K (1977) The polychaete worms. Definitions and keys to the orders, families and genera. Nat Hist Mus LA County Sci Ser 28 : 1 188.
28. Fauvel P (1923) Polychétes errantes, 5 (Faune de France), Paul Lechevalier, Paris. Polychètes errantes, Faune de France 5, Paul Lechevalier, Paris.
29. Fink WL (1988) Phylogenetic analysis and the detection of ontogenetic patterns. In : McKinney ML (ed Heterochrony in Evolution. A Multidisciplinary Approach. Plenum Press, New York, pp. 71 91.
30. Garstang W (1928) The morphology of the Tunicata, and its bearing on the phylogeny of the Chordata. Q J Microsc Sci 72 : 51 187.
31. Giangrande A, Petraroli A (1991) Reproduction, larval development and post-larval growth of Naineris laevigata (Polychaeta, Orbiniidae) in the Mediterrenaean Sea. Mar Biol 111 : 129 137.
32. Giere OW, Erséus C (1998) A systematic account of the Questidae (Annelida, Polychaeta), with description of new taxa. Zool Scr 27 : 345 360.
33. Glasby CJ (2000) Family Orbiniidae. In : Beesley PL, Ross GJB, Glasby CJ (eds Polychaetes & Allies: The Southern Synthesis. Fauna of Australia. Vol. 4A Polychaeta, Myzostomida, Pogonophora, Echiura, Sipuncula. CSIRO Publishing, Melbourne, pp. 79 84.
34. Halanych KM, Dahlgren T, McHugh D (2002) Unsegmented annelids? Possible origins of four lophotrochozoan worm taxa. Integr Comp Biol 42 : 678 684.
35. Hall BK (2003) Descent with modification: the unity underlying homology and homoplasy as seen through an analysis of development and evolution. Biol Rev 78 : 409 433.
36. Hall KA, Hutchings PA, Colgan DJ (2004) Further phylogenetic studies of the Polychaeta using 18S rDNA sequence data. J Mar Biol Assoc UK 84 : 949 960.
37. Hausen H (2001) Untersuchungen zur Phylogenie ''spiomorpher'' Polychaeten (Annelida). Logos Verlag, Berlin.
38. Hessling R (2002) Metameric organisation of the nervous system in developmental stages of Urechis caupo (Echiura) and its phylogenetic implications. Zoomorphology 121 : 221 234.
39. Hessling R, Westheide W (2002) Are Echiura derived from a segmented ancestor? Immunohistochemical analysis of the nervous system in developmental stages of Bonellia viridis. J Morphol 252 : 100 113.
40. Hibbett DS, Binder M (2002) Evolution of complex fruiting-body morphologies in homobasidiomycetes. Proc R Soc Lond B 269 : 1963 1969.
41. Hillis DM, Wiens JJ (2000) Molecules versus morphology in systematics: conflict, artifacts, and misconceptions. In : Wiens JJ (ed Phylogenetic Analysis of Morphological Data. Smithsonian Institution Press, Washington, DC, pp. 1 19.
42. Hutchings PA (2000) Family Arenicolidae. In : Beesley PL, Ross GJB, Glasby CJ (eds Polychaetes & Allies: The Southern Synthesis. Fauna of Australia. Vol. 4A Polychaeta, Myzostomida, Pogonophora, Echiura, Sipuncula. CSIRO Publishing, Melbourne, pp. 62 67.
43. Jamieson BGM, Webb RI (1984) The morphology, spermatozoal ultrastructure and phylogenetic affinities of a new species of questid (Polychaeta, Annelida). In : Hutchings PA (ed Proceedings of the First International Polychaete Conference, Sydney, Australia. Linnean Society of New South Wales, Sydney, pp. 21 34.
44. Jenner RA (2002) Boolean logic and character state identity: pitfalls of character coding in metazoan cladistics. Contrib Zool 71 : 67 91.
45. Jenner RA (2004a) When molecules and morphology clash: reconciling conflicting phylogenies of the Metazoa by considering secondary character loss. Evol Dev 6 : 372 378.
46. Jenner RA (2004b) The scientific status of metazoan cladistics: why current research practice must change. Zool Scr 33 : 293 310.
47. Jennings RM, Halanych KM (2005) Mitochondrial genomes of Clymenella torquata (Maldanidae) and Riftia pachyptila (Siboglinidae). Evidence for conserved gene order in Annelida. Mol Biol Evol 22 : 210 222.
48. Kojima S (1998) Paraphyletic status of Polychaeta suggested by phylogenetic analysis based on the amino acid sequences of elongation factor-1alpha. Mol Phylogenet Evol 9 : 255 261.
49. Kupriyanova EK (2003) Live history evolution in Serpulimorph polychaetes: a phylogenetic analysis. Hydrobiologia 496 : 105 114.
50. Kupriyanova EK, Macdonald TA, Rouse GW (2006) Phylogenetic relationships within Serpulidae (Sabellida, Annelida) inferred from molecular and morphological data. Zool Scr 35 : 421 439.
51. Lecointre G, Deleporte P (2005) Total evidence requires exclusion of phylogenetically misleading data. Zool Scr 34 : 101 117.
52. Lehrke J, ten Hove A, MacDonald TA, Bartolomaeus T, Bleidorn C (2007) Phylogenetic relationships of Serpulidae (Annelida: Polychaeta) based on 18S rDNA sequence data and implications for opercular evolution. Org Divers Evol In press.
53. Lewis PO (2001) A likelihood approach to estimating phylogeny from discrete morphological character data. Syst Biol 50 : 913 925.
54. Maxmen AB, King BF, Cutler EB, Giribet G (2003) Evolutionary relationships within the protostome phylum Sipuncula: a molecular analysis of ribosomal genes and histone H3 sequence data. Mol Phylogenet Evol 27 : 489 503.
55. McHugh D (1997) Molecular evidence that echiurans and pogonophorans are derived annelids. Proc Natl Acad Sci USA 94 : 8006 8009.
56. McHugh D (1999) Phylogeny of the Annelida: Siddall et al. (1998) rebutted. Cladistics 15 : 85 89.
57. McHugh D (2005) Molecular systematics of polychaetes (Annelida). Hydrobiologia 535/536 : 309 318.
58. McKinney ML (1988) Classifying heterochrony. Allometry, size, and time. In : McKinney ML (ed) Heterochrony in Evolution. A Multidisciplinary Approach. Plenum Press, New York, pp. 17 34.
59. McKinney ML, McNamara KJ (1991) Heterochrony. The Evolution of Ontogeny. Plenum Press, New York.
60. Moore J, Willmer P (1997) Convergent evolution in invertebrates. Biol Rev 72 : 1 60.
61. Nielsen C (2001) Animal Evolution: Interrelationships of the Living Phyla, 2nd edn. University Press, Oxford.
62. Nylander J, Ronquist F, Huelsenbeck J, Nieves-Aldrey J (2004) Bayesian phylogenetic analysis of combined data. Syst Biol 53 : 47 67.
63. Omland KE (1997) Examining two standard assumptions of ancestral reconstructions: repeated loss of dichromatism in dabbling ducks (Anatini). Evolution 51 : 1636 1646.
64. Omland KE (1999) The assumption and challenges of ancestral state reconstructions. Syst Biol 48 : 604 611.
65. Orrhage L (1966) Über die Anatomie des zentralen Nervensystemes der sedentären Polychaeten. Ein Beitrag zur Diskussion über die Architektur des Polychaeten-Gehirns und über den Begriff Palpen bei den Borstenwürmern. Ark Zool 19 : 99 133.
66. Orrhage L, Müller MCM (2005) Morphology of the nervous system of Polychaeta. Hydrobiologia 535/536 : 79 111.
67. Perrier E (1897) Traité de Zoologie, Fascicule IV. Vers, Mollusques, Tuniciers. Masson et Cie, Paris.
68. Persson J, Pleijel F (2005) On the phylogenetic relationships of Axiokebuita, Travisia and Scalibregmatidae (Polychaeta). Zootaxa 998 : 1 14.
69. Porter ML, Crandall KA (2003) Lost along the way: the significance of evolution in reverse. Trends Ecol Evol 18 : 541 547.
70. Purschke G (1997) Ultrastructure of the nuchal organs in polychaetes (Annelida) - new results and review. Acta Zool 78 : 123 143.
71. Purschke G (1999) Terrestrial polychaetes - models for the evolution of Clitellata (Annelida) Hydrobiologia 406 : 87 99.
72. Purschke G (2002) On the ground pattern of Annelida. Org Divers Evol 2 : 181 196.
73. Purschke G, Wolfrath F, Westheide W (1997) Ultrastructure of the nuchal organ in Ochnesoma squamatum (Sipuncula, Phascolionidae). Zoomorphology 117 : 23 31.
74. Purschke G, Hessling R, Westheide W (2000) The phylogenetic position of the Clitellata and the Echiura - on the problematic assessment of absent characters. J Zool Syst Evol Res 38 : 165 173.
75. Ree RH, Donoghue MJ (1998) Step matrices and the interpretation of homoplasy. Syst Biol 47 : 582 588.
76. Rieger RM, Purschke G (2005) The coelom and the origin of the annelid body plan. Hydrobiologia 535/536 : 127 137.
77. Rouse GW (1999) Trochophore concepts: ciliary bands and the evolution of larvae in spiralian Metazoa. Biol J Linn Soc 66 : 411 464.
78. Rouse GW, Fauchald K (1995) The articulation of annelids. Zool Scr 24 : 269 301.
79. Rouse GW, Fauchald K (1997) Cladistics and polychaetes. Zool Scr 26 : 139 204.
80. Rouse GW, Pleijel F (2001) Polychaetes. University Press, Oxford.
81. Rousset V, Pleijel F, Rouse GW, Erséus C, Siddall ME (2007) A molecular phylogeny of annelids. Cladistics 23 : 41 63.
82. Scheltema AH (1993) Aplacophora as progenetic aculiferans and the coelomate origin of mollusks as the sister taxon of Sipuncula. Biol Bull 184 : 57 78.
83. Schulze A, Cutler EB, Giribet G (2005) Reconstructing the phylogeny of Sipuncula. Hydrobiologia 535/536 : 277 296.
84. Smith PR, Ruppert EE (1988) Nephridia. In : Westheide W, Hermans CO, The ultrastructure of Polychaeta. Microfauna Marina 4 : 231 262.
85. Smith JPS, Lombardi J, Rieger RM (1986) Ultrastructure of the body cavity lining in a secondary acoelomate, Microphthalmus cf. listensis Westheide (Polychaeta, Hesionidae). J Morph 188 : 257 271.
86. Strong EE, Lipscomb D (1999) Character coding and inapplicable data. Cladistics 15 : 363 371.
87. Struck TH (2006) Progenetic species in polychaetes (Annelida) and problems assessing their phylogenetic affiliation. Integr Comp Biol 46 : 558 568.
88. Struck TH, Purschke G (2005) The sister group relationship of Aelosomatidae and Potamodrilidae (Annelida: ''Polychaeta'') - a molecular phylogenetic approach based on 18S rDNA and cytochrome oxidase I. Zool Anz 243 : 281 293.
89. Struck TH, Westheide W, Purschke G (2002) Progenesis in Eunicida (''Polychaeta'', Annelida) - separate evolutionary events? Evidence from molecular data. Mol Phylogenet Evol 25 : 190 199.
90. Struck TH, Purschke G, Halanych KM (2005a) A scaleless scale worm: molecular evidence for the phylogenetic placement of Pisione remota (Pisionidae, Annelida). Mar Biol Res 1 : 243 253.
91. Struck TH, Halanych KM, Purschke G (2005b) Dinophilidae (Annelida) is most likely not a progenetic Eunicida: evidence from 18S and 28S rDNA. Mol Phylogenet Evol 37 : 619 623.
92. Struck TH, Schult N, Kusen T, Hickman E, Bleidorn C, McHugh D, Halanych KM (2007) Annelid phylogeny and the status of Sipuncula and Echiura. BMC Evol Biol 7 : 57.
93. Swofford DL (2003) PAUP*. Phylogenetic analysis using parsimony, version 4. Sinauer, Sunderland, MA.
94. Tzetlin AB, Purschke G (2006) Fine structure of the pharyngeal apparatus of the pelagosphera larva in Phascolosoma agassizii (Sipuncula) and its phylogenetic significance. Zoomorphology 125 : 109 117.
95. Wanninger A, Koop D, Bromham L, Noonan E, Degnan BM (2005) Nervous and muscle system development in Phascolion strombus. Dev Genes Evol 215 : 509 518.
96. Waters JM, Saruwatari T, Kobayashi T, Oohara I, McDowall RM, Wallis GP (2002) Phylogenetic placement of retropinnid fishes: data set incongruence can be reduced by using asymmetric character state transformation costs. Syst Biol 51 : 432 449.
97. Westheide W (1985) The systematic position of the Dinophilidae and the archiannelid problem. In : Conway-Morris S, George JD, Gibson R, Platt HM (eds The Origin and Relationships of Lower Invertebrates. Oxford University Press, Oxford, pp. 310 326.
98. Westheide W (1987) Progenesis as a principle in meiofauna evolution. J Nat Hist 21 : 843 854.
99. Westheide W (1997) The direction of evolution within the Polychaeta. J Nat Hist 31 : 1 15.
100. Wheeler WC (1995) Sequence alignment, parameter sensitivity, and the phylogenetic analysis of molecular data. Syst Biol 44 : 321 331.
101. Wheeler WC, Ramirez MJ, Aagesen L, Schulmeister S (2006) Partition-free congruence analysis: implications for sensitivity analysis. Cladistics 22 : 256 263.
102. Wiens JJ, Bonett RM, Chippindale PT (2005) Ontogeny discombobulates phylogeny: paedomorphosis and higher-level salamander relationships. Syst Biol 54 : 91 110.
103. Wiklund H, Nygren A, Pleijel F, Sundberg P (2005) Phylogeny of Aphroditiformia (Polychaeta) based on molecular and morphological data. Mol Phylogenet Evol 37 : 459 502.
104. Willmer P (1990) Invertebrate Relationships. Patterns in Animal Evolution. Cambridge University Press, Cambridge.
105. Worsaae K (2005) Phylogeny of Nerillidae (Polychaeta, Annelida) as inferred from combined 18S rDNA and morphological data. Cladistics 21 : 143 162.