메뉴 건너뛰기




Volumn 194, Issue 7, 2012, Pages 1763-1776

Mutational analyses reveal overall topology and functional regions of NilB, a bacterial outer membrane protein required for host association in a model of animal-microbe mutualism

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; GREEN FLUORESCENT PROTEIN; NILB PROTEIN; OUTER MEMBRANE PROTEIN; TETRATRICOPEPTIDE REPEAT PROTEIN; UNCLASSIFIED DRUG;

EID: 84860346170     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.06711-11     Document Type: Article
Times cited : (15)

References (58)
  • 1
    • 0034598904 scopus 로고    scopus 로고
    • Structural basis of presequence recognition by the mitochondrial protein import receptor Tom20
    • Abe Y, et al. 2000. Structural basis of presequence recognition by the mitochondrial protein import receptor Tom20. Cell 100:551-560.
    • (2000) Cell , vol.100 , pp. 551-560
    • Abe, Y.1
  • 2
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    • Altschul SF, et al. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1
  • 4
    • 13244259253 scopus 로고    scopus 로고
    • Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method
    • Bagos PG, Liakopoulos TD, Hamodrakas SJ. 2005. Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method. BMC Bioinformatics 6:7.
    • (2005) BMC Bioinformatics , vol.6 , pp. 7
    • Bagos, P.G.1    Liakopoulos, T.D.2    Hamodrakas, S.J.3
  • 5
    • 2942522711 scopus 로고    scopus 로고
    • A hidden Markov model method, capable of predicting and discriminating beta-barrel outer membrane proteins
    • Bagos PG, Liakopoulos TD, Spyropoulos IC, Hamodrakas SJ. 2004. A hidden Markov model method, capable of predicting and discriminating beta-barrel outer membrane proteins. BMC Bioinformatics 5:29.
    • (2004) BMC Bioinformatics , vol.5 , pp. 29
    • Bagos, P.G.1    Liakopoulos, T.D.2    Spyropoulos, I.C.3    Hamodrakas, S.J.4
  • 7
    • 0025751624 scopus 로고
    • An improved Tn7-based system for the single-copy insertion of cloned genes into chromosomes of Gramnegative bacteria
    • Bao Y, Lies DP, Fu H, Roberts GP. 1991. An improved Tn7-based system for the single-copy insertion of cloned genes into chromosomes of Gramnegative bacteria. Gene 109:167-168.
    • (1991) Gene , vol.109 , pp. 167-168
    • Bao, Y.1    Lies, D.P.2    Fu, H.3    Roberts, G.P.4
  • 10
    • 0000464831 scopus 로고
    • The nature of the intestinal vesicle in nematodes of the family Steinernematidae
    • Bird AF, Akhurst RJ. 1983. The nature of the intestinal vesicle in nematodes of the family Steinernematidae. Int. J. Parasitol. 13:599-606.
    • (1983) Int. J. Parasitol. , vol.13 , pp. 599-606
    • Bird, A.F.1    Akhurst, R.J.2
  • 11
    • 0344496513 scopus 로고    scopus 로고
    • The tetratricopeptide repeat: a structural motif mediating protein-protein interactions
    • Blatch GL, Lassle M. 1999. The tetratricopeptide repeat: a structural motif mediating protein-protein interactions. Bioessays 21:932-939.
    • (1999) Bioessays , vol.21 , pp. 932-939
    • Blatch, G.L.1    Lassle, M.2
  • 12
    • 0027463205 scopus 로고
    • DNA relatedness between Xenorhabdus spp. (Enterobacteriaceae), symbiotic bacteria of entomopathogenic nematodes, and a proposal to transfer Xenorhabdus luminescens to a new genus, Photorhabdus, gen. nov
    • Boemare NE, Akhurst RJ, Mourant RG. 1993. DNA relatedness between Xenorhabdus spp. (Enterobacteriaceae), symbiotic bacteria of entomopathogenic nematodes, and a proposal to transfer Xenorhabdus luminescens to a new genus, Photorhabdus, gen. nov. Int. J. Syst. Bacteriol. 43:249-255.
    • (1993) Int. J. Syst. Bacteriol. , vol.43 , pp. 249-255
    • Boemare, N.E.1    Akhurst, R.J.2    Mourant, R.G.3
  • 13
    • 71549134971 scopus 로고    scopus 로고
    • Common trends in mutualism re-vealed by model associations between invertebrates and bacteria
    • Chaston J, Goodrich-Blair H. 2010. Common trends in mutualism re-vealed by model associations between invertebrates and bacteria. FEMS Microbiol. Rev. 34:41-58.
    • (2010) FEMS Microbiol. Rev. , vol.34 , pp. 41-58
    • Chaston, J.1    Goodrich-Blair, H.2
  • 14
    • 84859251997 scopus 로고    scopus 로고
    • The entomopathogenic bacterial endosymbionts Xenorhabdus and Photorhabdus: convergent lifestyles from divergent genomes
    • Chaston JM, et al. 2011. The entomopathogenic bacterial endosymbionts Xenorhabdus and Photorhabdus: convergent lifestyles from divergent genomes. PLoS One 6:e27909.
    • (2011) PLoS One , vol.6
    • Chaston, J.M.1
  • 15
    • 6344272904 scopus 로고    scopus 로고
    • Characterization of a lipoprotein, NilC, required by Xenorhabdus nematophila for mutualism with its nematode host
    • Cowles CE, Goodrich-Blair H. 2004. Characterization of a lipoprotein, NilC, required by Xenorhabdus nematophila for mutualism with its nematode host. Mol. Microbiol. 54:464-477.
    • (2004) Mol. Microbiol. , vol.54 , pp. 464-477
    • Cowles, C.E.1    Goodrich-Blair, H.2
  • 16
    • 33749984189 scopus 로고    scopus 로고
    • NilR is necessary for co-ordinate repression of Xenorhabdus nematophila mutualism genes
    • Cowles CE, Goodrich-Blair H. 2006. nilR is necessary for co-ordinate repression of Xenorhabdus nematophila mutualism genes. Mol. Microbiol. 62:760-771.
    • (2006) Mol. Microbiol. , vol.62 , pp. 760-771
    • Cowles, C.E.1    Goodrich-Blair, H.2
  • 17
    • 44949165698 scopus 로고    scopus 로고
    • The Xenorhabdus nematophila nil-ABC genes confer the ability of Xenorhabdus spp. to colonize Steinernema carpocapsae nematodes
    • Cowles CE, Goodrich-Blair H. 2008. The Xenorhabdus nematophila nil-ABC genes confer the ability of Xenorhabdus spp. to colonize Steinernema carpocapsae nematodes. J. Bacteriol. 190:4121-4128.
    • (2008) J. Bacteriol. , vol.190 , pp. 4121-4128
    • Cowles, C.E.1    Goodrich-Blair, H.2
  • 18
    • 34047271971 scopus 로고    scopus 로고
    • The global regulator Lrp contributes to mutualism, pathogenesis and phenotypic variation in the bacterium Xenorhabdus nematophila
    • Cowles KN, Cowles CE, Richards GR, Martens EC, Goodrich-Blair H. 2007. The global regulator Lrp contributes to mutualism, pathogenesis and phenotypic variation in the bacterium Xenorhabdus nematophila. Cell. Microbiol. 9:1311-1323.
    • (2007) Cell. Microbiol. , vol.9 , pp. 1311-1323
    • Cowles, K.N.1    Cowles, C.E.2    Richards, G.R.3    Martens, E.C.4    Goodrich-Blair, H.5
  • 20
    • 0036500658 scopus 로고    scopus 로고
    • Structural basis of gating by the outer membrane transporter FecA
    • Ferguson AD, et al. 2002. Structural basis of gating by the outer membrane transporter FecA. Science 295:1715-1719.
    • (2002) Science , vol.295 , pp. 1715-1719
    • Ferguson, A.D.1
  • 21
    • 34247386219 scopus 로고    scopus 로고
    • Influence of nematode age and culture conditions on morphological and physiological parameters in the bacterial vesicle of Steinernema carpocapsae (Nematoda: Steinernematidae)
    • Flores-Lara Y, Renneckar D, Forst S, Goodrich-Blair H, Stock P. 2007. Influence of nematode age and culture conditions on morphological and physiological parameters in the bacterial vesicle of Steinernema carpocapsae (Nematoda: Steinernematidae). J. Invertebr. Pathol. 95:110-118.
    • (2007) J. Invertebr. Pathol. , vol.95 , pp. 110-118
    • Flores-Lara, Y.1    Renneckar, D.2    Forst, S.3    Goodrich-Blair, H.4    Stock, P.5
  • 23
    • 0024451647 scopus 로고
    • Insertion of peptides into cell-surface-exposed areas of the Escherichia coli OmpA protein does not interfere with export and membrane assembly
    • Freudl R. 1989. Insertion of peptides into cell-surface-exposed areas of the Escherichia coli OmpA protein does not interfere with export and membrane assembly. Gene 82:229-236.
    • (1989) Gene , vol.82 , pp. 229-236
    • Freudl, R.1
  • 24
    • 33947325949 scopus 로고    scopus 로고
    • Symbiotic nitrogen fixation in legume nodules: process and signaling. A review
    • Garg N, Geetanjali. 2007. Symbiotic nitrogen fixation in legume nodules: process and signaling. A review. Agron. Sustain. Dev. 27:59-68.
    • (2007) Agron. Sustain. Dev. , vol.27 , pp. 59-68
    • Geetanjali, G.N.1
  • 25
    • 33645235483 scopus 로고    scopus 로고
    • Analysis of the PixA inclusion body protein of Xenorhabdus nematophila
    • Goetsch M, Owen H, Goldman B, Forst S. 2006. Analysis of the PixA inclusion body protein of Xenorhabdus nematophila. J. Bacteriol. 188: 2706-2710.
    • (2006) J. Bacteriol. , vol.188 , pp. 2706-2710
    • Goetsch, M.1    Owen, H.2    Goldman, B.3    Forst, S.4
  • 26
    • 34247387650 scopus 로고    scopus 로고
    • Mutualism and pathogenesis in Xenorhabdus and Photorhabdus: two roads to the same destination
    • Goodrich-Blair H, Clarke DJ. 2007. Mutualism and pathogenesis in Xenorhabdus and Photorhabdus: two roads to the same destination. Mol. Microbiol. 64:260-268.
    • (2007) Mol. Microbiol. , vol.64 , pp. 260-268
    • Goodrich-Blair, H.1    Clarke, D.J.2
  • 27
    • 0018613990 scopus 로고
    • Outer membrane of Pseudomonas aeruginosa: heat-2-mercaptoethanol-modifiable proteins
    • Hancock RE, Carey AM. 1979. Outer membrane of Pseudomonas aeruginosa: heat-2-mercaptoethanol-modifiable proteins. J. Bacteriol. 140:902-910.
    • (1979) J. Bacteriol. , vol.140 , pp. 902-910
    • Hancock, R.E.1    Carey, A.M.2
  • 28
    • 77749304001 scopus 로고    scopus 로고
    • Membrane topology of outer membrane protein AlgE, which is required for alginate production in Pseudomonas aeruginosa
    • Hay ID, Rehman ZU, Rehm BH. 2010. Membrane topology of outer membrane protein AlgE, which is required for alginate production in Pseudomonas aeruginosa. Appl. Environ. Microbiol. 76:1806-1812.
    • (2010) Appl. Environ. Microbiol. , vol.76 , pp. 1806-1812
    • Hay, I.D.1    Rehman, Z.U.2    Rehm, B.H.3
  • 29
    • 67149144225 scopus 로고    scopus 로고
    • CpxRA influences Xenorhabdus nematophila colonization initiation and outgrowth in Steinernema carpocapsae nematodes through regulation of the nil locus
    • Herbert Tran EE, Andersen AW, Goodrich-Blair H. 2009. CpxRA influences Xenorhabdus nematophila colonization initiation and outgrowth in Steinernema carpocapsae nematodes through regulation of the nil locus. Appl. Environ. Microbiol. 75:4007-4014.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 4007-4014
    • Herbert Tran, E.E.1    Andersen, A.W.2    Goodrich-Blair, H.3
  • 30
    • 0036042858 scopus 로고    scopus 로고
    • Identification of Xenorhabdus nematophila genes required for mutualistic colonization of Steinernema carpocapsae nematodes
    • Heungens K, Cowles CE, Goodrich-Blair H. 2002. Identification of Xenorhabdus nematophila genes required for mutualistic colonization of Steinernema carpocapsae nematodes. Mol. Microbiol. 45:1337-1353.
    • (2002) Mol. Microbiol. , vol.45 , pp. 1337-1353
    • Heungens, K.1    Cowles, C.E.2    Goodrich-Blair, H.3
  • 31
    • 0028954576 scopus 로고
    • Utilization of transferrin-bound iron by Haemophilus influenzae requires an intact tonB gene
    • Jarosik GP, Maciver I, Hansen EJ. 1995. Utilization of transferrin-bound iron by Haemophilus influenzae requires an intact tonB gene. Infect. Immun. 63:710-713.
    • (1995) Infect. Immun. , vol.63 , pp. 710-713
    • Jarosik, G.P.1    Maciver, I.2    Hansen, E.J.3
  • 33
    • 60749102331 scopus 로고    scopus 로고
    • Membrane protein architects: the role of the BAM complex in outer membrane protein assembly
    • Knowles TJ, Scott-Tucker A, Overduin M, Henderson IR. 2009. Membrane protein architects: the role of the BAM complex in outer membrane protein assembly. Nat. Rev. Microbiol. 7:206-214.
    • (2009) Nat. Rev. Microbiol. , vol.7 , pp. 206-214
    • Knowles, T.J.1    Scott-Tucker, A.2    Overduin, M.3    Henderson, I.R.4
  • 34
    • 78651364685 scopus 로고    scopus 로고
    • TonB or not TonB: is that the question?
    • Krewulak KD, Vogel HJ. 2011. TonB or not TonB: is that the question? Biochem. Cell Biol. 89:87-97.
    • (2011) Biochem. Cell Biol. , vol.89 , pp. 87-97
    • Krewulak, K.D.1    Vogel, H.J.2
  • 35
    • 33846033400 scopus 로고    scopus 로고
    • CDD: a conserved domain database for interactive domain family analysis
    • Marchler-Bauer A, et al. 2007. CDD: a conserved domain database for interactive domain family analysis. Nucleic Acids Res. 35:D237-D240.
    • (2007) Nucleic Acids Res , vol.35
    • Marchler-Bauer, A.1
  • 36
    • 4243671284 scopus 로고    scopus 로고
    • A sequence-profilebasedHMMfor predicting and discriminating beta barrel membrane proteins
    • Martelli PL, Fariselli P, Krogh A, Casadio R. 2002. A sequence-profilebasedHMMfor predicting and discriminating beta barrel membrane proteins. Bioinformatics 18(Suppl 1):S46-S53.
    • (2002) Bioinformatics , vol.18 , Issue.SUPPL. 1
    • Martelli, P.L.1    Fariselli, P.2    Krogh, A.3    Casadio, R.4
  • 37
    • 0037509967 scopus 로고    scopus 로고
    • Early colonization events in the mutualistic association between Steinernema carpocapsae nematodes and Xenorhabdus nematophila bacteria
    • Martens EC, Heungens K, Goodrich-Blair H. 2003. Early colonization events in the mutualistic association between Steinernema carpocapsae nematodes and Xenorhabdus nematophila bacteria. J. Bacteriol. 185:3147-3154.
    • (2003) J. Bacteriol. , vol.185 , pp. 3147-3154
    • Martens, E.C.1    Heungens, K.2    Goodrich-Blair, H.3
  • 38
    • 26244437467 scopus 로고    scopus 로고
    • Analysis of Xenorhabdus nematophila metabolic mutants yields insight into stages of Steinernema carpocapsae nematode intestinal colonization
    • Martens EC, Russell FM, Goodrich-Blair H. 2005. Analysis of Xenorhabdus nematophila metabolic mutants yields insight into stages of Steinernema carpocapsae nematode intestinal colonization. Mol. Microbiol. 51: 28-45.
    • (2005) Mol. Microbiol. , vol.51 , pp. 28-45
    • Martens, E.C.1    Russell, F.M.2    Goodrich-Blair, H.3
  • 40
    • 62249195600 scopus 로고    scopus 로고
    • Verification of a topology model of PorT as an integral outer-membrane protein in Porphyromonas gingivalis
    • Nguyen KA, et al. 2009. Verification of a topology model of PorT as an integral outer-membrane protein in Porphyromonas gingivalis. Microbiology 155:328-337.
    • (2009) Microbiology , vol.155 , pp. 328-337
    • Nguyen, K.A.1
  • 41
    • 4644362959 scopus 로고    scopus 로고
    • Identification and functional characterization of a Xenorhabdus nematophila oligopeptide permease
    • Orchard SS, Goodrich-Blair H. 2004. Identification and functional characterization of a Xenorhabdus nematophila oligopeptide permease. Appl. Environ. Microbiol. 70:5621-5627.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 5621-5627
    • Orchard, S.S.1    Goodrich-Blair, H.2
  • 42
    • 0002967759 scopus 로고
    • The presence of Achromobacter nematophilus in the infective stage of a Neoaplectana sp. (Steinernematidae: Nematoda)
    • Poinar GO. 1966. The presence of Achromobacter nematophilus in the infective stage of a Neoaplectana sp. (Steinernematidae: Nematoda). Nematologica 12:105-108.
    • (1966) Nematologica , vol.12 , pp. 105-108
    • Poinar, G.O.1
  • 44
    • 0000225985 scopus 로고
    • The nature of Achromobacter nematophilus as an insect pathogen
    • Poinar GO, Jr, Thomas GM. 1967. The nature of Achromobacter nematophilus as an insect pathogen. J. Invertebr. Pathol. 9:510-514.
    • (1967) J. Invertebr. Pathol. , vol.9 , pp. 510-514
    • Poinar Jr., G.O.1    Thomas, G.M.2
  • 45
    • 0042065285 scopus 로고    scopus 로고
    • Touch and go: tying TonB to transport
    • Postle K, Kadner RJ. 2003. Touch and go: tying TonB to transport. Mol. Microbiol. 49:869-882.
    • (2003) Mol. Microbiol. , vol.49 , pp. 869-882
    • Postle, K.1    Kadner, R.J.2
  • 47
    • 0033759220 scopus 로고    scopus 로고
    • Iron metabolism in pathogenic bacteria
    • Ratledge C, Dover LG. 2000. Iron metabolism in pathogenic bacteria. Annu. Rev. Microbiol. 54:881-941.
    • (2000) Annu. Rev. Microbiol. , vol.54 , pp. 881-941
    • Ratledge, C.1    Dover, L.G.2
  • 48
    • 33748324384 scopus 로고    scopus 로고
    • R Development Core Team. R Foundation for Statistical Computing, Vienna, Austria.
    • R Development Core Team. 2006. R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria.
    • (2006) R: a language and environment for statistical computing
  • 49
    • 0029975382 scopus 로고    scopus 로고
    • Membrane topology of the outer membrane protein OprH from Pseudomonas aeruginosa: PCR-mediated sitedirected insertion and deletion mutagenesis
    • Rehm BH, Hancock RE. 1996. Membrane topology of the outer membrane protein OprH from Pseudomonas aeruginosa: PCR-mediated sitedirected insertion and deletion mutagenesis. J. Bacteriol. 178:3346-3349.
    • (1996) J. Bacteriol. , vol.178 , pp. 3346-3349
    • Rehm, B.H.1    Hancock, R.E.2
  • 50
    • 66749094686 scopus 로고    scopus 로고
    • Masters of conquest and pillage: Xenorhabdus nematophila global regulators control transitions from virulence to nutrient acquisition
    • Richards GR, Goodrich-Blair H. 2009. Masters of conquest and pillage: Xenorhabdus nematophila global regulators control transitions from virulence to nutrient acquisition. Cell. Microbiol. 11:1025-1033.
    • (2009) Cell. Microbiol. , vol.11 , pp. 1025-1033
    • Richards, G.R.1    Goodrich-Blair, H.2
  • 51
    • 0025212523 scopus 로고
    • Receptors for transferrin in pathogenic bacteria are specific for the host's protein
    • Schryvers AB, Gonzalez GC. 1990. Receptors for transferrin in pathogenic bacteria are specific for the host's protein. Can. J. Microbiol. 36:145-147.
    • (1990) Can. J. Microbiol. , vol.36 , pp. 145-147
    • Schryvers, A.B.1    Gonzalez, G.C.2
  • 52
    • 0036438796 scopus 로고    scopus 로고
    • RP4-based plasmids for conjugation between Escherichia coli and members of the Vibrionaceae
    • Stabb EV, Ruby EG. 2002. RP4-based plasmids for conjugation between Escherichia coli and members of the Vibrionaceae. Methods Enzymol. 358: 413-426.
    • (2002) Methods Enzymol , vol.358 , pp. 413-426
    • Stabb, E.V.1    Ruby, E.G.2
  • 53
    • 0035845572 scopus 로고    scopus 로고
    • The plug domain of FepA, a TonB-dependent transport protein from Escherichia coli, binds its siderophore in the absence of the transmembrane barrel domain
    • Usher KC, Ö zkan E, Gardner KH, Deisenhofer J. 2001. The plug domain of FepA, a TonB-dependent transport protein from Escherichia coli, binds its siderophore in the absence of the transmembrane barrel domain. Proc. Natl. Acad. Sci. U. S. A. 98:10676-10681.
    • (2001) Proc. Natl. Acad. Sci. U. S. A. , vol.98 , pp. 10676-10681
    • Usher, K.C.1    Ö zkan, E.2    Gardner, K.H.3    Deisenhofer, J.4
  • 54
    • 0034906974 scopus 로고    scopus 로고
    • Xenorhabdus nematophilus as a model for host-bacterium interactions: rpoS is necessary for mutualism with nematodes
    • Vivas EI, Goodrich-Blair H. 2001. Xenorhabdus nematophilus as a model for host-bacterium interactions: rpoS is necessary for mutualism with nematodes. J. Bacteriol. 183:4687-4693.
    • (2001) J. Bacteriol. , vol.183 , pp. 4687-4693
    • Vivas, E.I.1    Goodrich-Blair, H.2
  • 56
    • 0001246481 scopus 로고
    • A method for obtaining infective nematode larvae from cultures
    • White GF. 1927. A method for obtaining infective nematode larvae from cultures. Science 66:302-303.
    • (1927) Science , vol.66 , pp. 302-303
    • White, G.F.1
  • 57
    • 23044489264 scopus 로고    scopus 로고
    • TonB-dependent outer membrane transport: going for Baroque?
    • Wiener MC. 2005. TonB-dependent outer membrane transport: going for Baroque? Curr. Opin. Struct. Biol. 15:394-400.
    • (2005) Curr. Opin. Struct. Biol. , vol.15 , pp. 394-400
    • Wiener, M.C.1
  • 58
    • 0008904052 scopus 로고
    • Biology, life cycle, and redescription of Neoaplectana bibionis Bovien, 1937 Nematoda: Steinernematidae
    • Wouts WM. 1980. Biology, life cycle, and redescription of Neoaplectana bibionis Bovien, 1937 Nematoda: Steinernematidae. J. Nematol. 12:62-72.
    • (1980) J. Nematol. , vol.12 , pp. 62-72
    • Wouts, W.M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.